Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 7.7e-311 1069.7 563 100.0
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 2.6e-226 788.9 564 72.7
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 2.6e-202 709.1 569 65.6
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 1.4e-200 703.4 563 63.9
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 2.0e-186 656.4 563 60.6
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 5.9e-186 654.8 569 58.9
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 6.1e-183 644.8 563 59.1
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 2.4e-179 632.9 563 59.3
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 2.0e-178 629.8 563 59.0
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 3.5e-178 629.0 563 58.3
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 5.9e-178 628.2 563 60.0
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 1.0e-177 627.5 563 58.3
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 1.0e-177 627.5 563 58.8
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 6.5e-177 624.8 563 57.7
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 1.1e-176 624.0 563 58.1
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 1.5e-176 623.6 563 58.1
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 1.5e-176 623.6 563 58.1
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 5.5e-176 621.7 563 57.9
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 1.6e-175 620.2 563 58.6
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 3.6e-175 619.0 563 58.8
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 3.6e-175 619.0 563 58.3
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 4.7e-175 618.6 563 56.7
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 1.8e-174 616.7 563 57.4
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 2.3e-174 616.3 563 57.7
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 2.0e-173 613.2 544 58.1
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 3.4e-173 612.5 563 56.8
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 3.4e-173 612.5 563 56.8
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 3.4e-173 612.5 563 59.5
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 5.7e-173 611.7 540 58.5
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 2.8e-172 609.4 563 58.6
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 6.3e-172 608.2 547 57.8
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 6.3e-172 608.2 563 59.0
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 8.3e-172 607.8 563 58.6
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 1.1e-171 607.4 543 58.6
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 3.1e-171 605.9 563 56.7
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 1.2e-170 604.0 564 56.4
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 5.9e-170 601.7 559 56.5
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 7.7e-170 601.3 563 58.4
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 1.7e-169 600.1 563 58.8
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 2.2e-169 599.7 563 56.5
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 2.9e-169 599.4 577 57.0
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 3.8e-169 599.0 563 57.9
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 8.5e-169 597.8 563 57.7
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 8.5e-169 597.8 564 56.7
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 8.5e-169 597.8 563 57.5
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 1.1e-168 597.4 563 57.5
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 1.5e-168 597.0 563 57.5
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 1.9e-168 596.7 563 56.7
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 3.2e-168 595.9 628 53.3
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 3.2e-168 595.9 563 56.8
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 4.2e-168 595.5 563 58.3
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 9.4e-168 594.3 602 53.7
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 1.2e-167 594.0 564 56.7
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 1.2e-167 594.0 563 55.8
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 2.7e-167 592.8 539 57.3
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 3.6e-167 592.4 563 56.8
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 4.7e-167 592.0 563 56.5
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 1.4e-166 590.5 543 57.5
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 3.0e-166 589.3 563 55.8
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 5.2e-166 588.6 563 55.4
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 6.8e-166 588.2 542 57.2
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 1.2e-165 587.4 563 55.6
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.2e-165 587.4 547 56.7
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 1.2e-165 587.4 563 56.3
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 5.7e-165 585.1 564 55.9
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 5.7e-165 585.1 564 55.9
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 1.3e-164 583.9 563 55.2
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 2.2e-164 583.2 563 55.6
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 4.8e-164 582.0 563 56.0
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 1.1e-163 580.9 561 54.2
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 7.0e-163 578.2 563 55.2
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 1.6e-162 577.0 563 55.4
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 1.6e-162 577.0 563 55.4
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 1.6e-162 577.0 563 55.6
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 1.7e-161 573.5 564 55.1
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 1.7e-161 573.5 563 55.1
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 3.8e-161 572.4 521 55.7
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 3.8e-161 572.4 548 54.6
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 3.3e-160 569.3 524 57.3
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 9.5e-160 567.8 546 54.8
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 1.6e-159 567.0 534 56.6
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 1.0e-158 564.3 534 55.8
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 6.8e-158 561.6 563 54.4
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 6.8e-158 561.6 614 51.1
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 2.0e-157 560.1 563 55.1
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 5.7e-157 558.5 578 52.6
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 2.8e-156 556.2 544 54.4
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 4.9e-156 555.4 565 54.0
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 3.2e-155 552.7 513 55.9
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 1.7e-153 547.0 513 56.9
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 1.5e-152 543.9 647 49.0
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 2.1e-151 540.0 577 52.5
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 1.6e-146 523.9 513 54.4
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 7.5e-141 505.0 432 58.8
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 1.8e-134 483.8 477 54.7
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 2.9e-132 476.5 434 58.3
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 1.4e-131 474.2 594 47.6
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 5.1e-129 465.7 394 61.4
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 1.9e-115 420.6 555 45.8
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 4.0e-102 376.3 331 60.7
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 1.1e-99 368.2 550 39.6
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 1.9e-99 367.5 288 66.0
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 4.2e-99 366.3 367 54.5
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 3.9e-97 359.8 548 42.2
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 1.2e-93 348.2 329 58.7
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 3.2e-91 340.1 357 49.3
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 1.4e-78 298.1 367 46.3
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 8.8e-65 252.3 257 50.6
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 2.0e-56 224.6 173 63.0
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 5.7e-56 223.0 218 56.9
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 8.3e-55 219.2 200 63.0
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 3.2e-51 207.2 199 53.8
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 2.8e-34 151.0 145 49.7
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 4.7e-34 150.2 130 56.9
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 2.3e-28 131.3 162 46.3
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 2.9e-23 114.4 85 70.6
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 1.9e-22 111.7 157 44.6
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 1.9e-22 111.7 157 44.6
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 7.1e-22 109.8 77 66.2
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 5.1e-20 103.6 180 38.3
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 1.1e-19 102.4 178 38.8
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 3.3e-19 100.9 162 41.4
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.8e-17 95.1 91 51.6
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 5.8e-16 90.1 131 40.5
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 1.4e-14 85.5 57 70.2
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 1.6e-13 82.0 93 43.0
BcaB06g25725 Brassica carinata HOM05D003301 ORTHO05D003665 1.7e-12 78.6 162 31.5
A05p33220 Brassica napus HOM05D003301 ORTHO05D003665 1.9e-11 75.1 160 30.6
BraA05t22145Z Brassica rapa HOM05D003301 ORTHO05D003665 1.9e-11 75.1 160 30.6
Aa31LG8G3460 Aethionema arabicum HOM05D003301 ORTHO05D003665 4.3e-11 73.9 149 31.5
THA.LOC104810537 Tarenaya hassleriana HOM05D003301 ORTHO05D003665 7.3e-11 73.2 310 24.5
BcaC05g28893 Brassica carinata HOM05D003301 ORTHO05D003665 9.6e-11 72.8 160 30.6
BolC5t33768H Brassica oleracea HOM05D003301 ORTHO05D003665 9.6e-11 72.8 160 30.6
C05p50180 Brassica napus HOM05D003301 ORTHO05D003665 2.1e-10 71.6 160 30.6
CDE12G0785 Ceratophyllum demersum HOM05D004454 ORTHO05D005462 2.1e-10 71.6 267 26.6
Thhalv10021943m.g Eutrema salsugineum HOM05D003301 ORTHO05D003665 2.1e-10 71.6 160 30.0
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 3.6e-10 70.9 87 48.3
AT3G16320 Arabidopsis thaliana HOM05D003301 ORTHO05D003665 3.6e-10 70.9 152 30.9
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 6.2e-10 70.1 73 45.2
Hund10083 Selenicereus undatus HOM05D003301 ORTHO05D003665 8.1e-10 69.7 333 24.0
GSVIVG01015317001 Vitis vinifera HOM05D003301 ORTHO05D003665 1.1e-09 69.3 313 24.6
CARHR091530 Cardamine hirsuta HOM05D003301 ORTHO05D003665 1.4e-09 68.9 141 31.2
Carub.0003s1607 Capsella rubella HOM05D003301 ORTHO05D003665 4.0e-09 67.4 141 31.9
CiPaw.01G151200 Carya illinoinensis HOM05D003301 ORTHO05D003665 4.0e-09 67.4 218 26.1
THA.LOC104804009 Tarenaya hassleriana HOM05D003301 ORTHO05D003665 4.0e-09 67.4 312 24.0
Sp3g14690 Schrenkiella parvula HOM05D003301 ORTHO05D003665 5.2e-09 67.0 358 23.5
SEGI_02735 Sequoiadendron giganteum HOM05D003301 ORTHO05D003665 1.5e-08 65.5 131 33.6
Lalb_Chr06g0174721 Lupinus albus HOM05D003301 ORTHO05D003665 2.0e-08 65.1 318 23.9
Os02g0656300 Oryza sativa ssp. japonica HOM05D004454 ORTHO05D005462 3.4e-08 64.3 157 26.8
AL3G29070 Arabidopsis lyrata HOM05D003301 ORTHO05D003665 5.8e-08 63.5 337 23.7
EL10Ac5g11341 Beta vulgaris HOM05D003301 ORTHO05D003665 5.8e-08 63.5 146 28.1
Eucgr.D00685 Eucalyptus grandis HOM05D003301 ORTHO05D003665 5.8e-08 63.5 292 22.6
Zm00001eb249420 Zea mays HOM05D004454 ORTHO05D005462 9.9e-08 62.8 146 26.7
AagrBONN_evm.TU.Sc2ySwM_368.1566 Anthoceros agrestis HOM05D004454 ORTHO05D005462 1.3e-07 62.4 141 27.7
Mapoly0091s0003 Marchantia polymorpha HOM05D004454 ORTHO05D005462 1.3e-07 62.4 143 25.9
Phvul.004G048400 Phaseolus vulgaris HOM05D003301 ORTHO05D003665 1.3e-07 62.4 304 24.0
MD02G1061000 Malus domestica HOM05D003301 ORTHO05D003665 1.7e-07 62.0 146 28.8
SEGI_04834 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.7e-07 62.0 47 63.8
Prupe.7G222000 Prunus persica HOM05D003301 ORTHO05D003665 2.9e-07 61.2 146 28.8
CDE04G0088 Ceratophyllum demersum HOM05D004454 ORTHO05D005462 4.9e-07 60.5 264 25.0
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 4.9e-07 60.5 91 38.5
Os06g0622500 Oryza sativa ssp. japonica HOM05D003301 ORTHO05D003665 8.4e-07 59.7 128 30.5
Potri.006G164000 Populus trichocarpa HOM05D003301 ORTHO05D003665 8.4e-07 59.7 146 26.7
SMO147G0289 Selaginella moellendorffii HOM05D004454 ORTHO05D005462 1.1e-06 59.3 127 29.1
Carub.0005s1425 Capsella rubella HOM05D004454 ORTHO05D005462 3.2e-06 57.8 145 24.1
AL5G27480 Arabidopsis lyrata HOM05D004454 ORTHO05D005462 4.2e-06 57.4 145 24.1
AT3G48150 Arabidopsis thaliana HOM05D004454 ORTHO05D005462 4.2e-06 57.4 145 24.1
Duzib150G0839 Durio zibethinus HOM05D003301 ORTHO05D003665 4.2e-06 57.4 146 26.7
BolC1t03163H Brassica oleracea HOM05D004454 ORTHO05D005462 7.1e-06 56.6 129 25.6
Eucgr.C01007 Eucalyptus grandis HOM05D003301 ORTHO05D003665 7.1e-06 56.6 133 27.8
Phvul.002G154200 Phaseolus vulgaris HOM05D004454 ORTHO05D005462 9.3e-06 56.2 140 24.3
Sp5g13890 Schrenkiella parvula HOM05D004454 ORTHO05D005462 9.3e-06 56.2 129 25.6


User provided reference genes

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