Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0073s0014 Marchantia polymorpha HOM05D007331 ORTHO05D009273 5.8e-92 340.9 173 100.0
Pp3c22_3530 Physcomitrium patens HOM05D007331 ORTHO05D009273 5.7e-23 111.7 114 56.1
AagrBONN_evm.TU.Sc2ySwM_368.2672 Anthoceros agrestis HOM05D007331 ORTHO05D009273 5.9e-20 101.7 121 47.1
HPP92_020186 Vanilla planifolia HOM05D007331 ORTHO05D009273 5.4e-13 78.6 134 35.8
ClCG05G009050 Citrullus lanatus HOM05D007331 ORTHO05D009273 7.7e-12 74.7 117 37.6
Migut.F00197 Erythranthe guttata HOM05D007331 ORTHO05D009273 1.0e-11 74.3 115 37.4
MSTRG.8644 Avicennia marina HOM05D007331 ORTHO05D009273 2.2e-11 73.2 103 36.9
CsaV3_3G019730 Cucumis sativus L. HOM05D007331 ORTHO05D009273 3.8e-11 72.4 122 36.1
Os01g0705300 Oryza sativa ssp. japonica HOM05D007331 ORTHO05D009273 5.0e-11 72.0 152 31.6
PSO063G7177 Papaver somniferum HOM05D007331 ORTHO05D009273 5.0e-11 72.0 110 36.4
PSO170G4979 Papaver somniferum HOM05D007331 ORTHO05D009273 5.0e-11 72.0 110 36.4
MELO3C019371.2 Cucumis melo HOM05D000442 ORTHO05D007032 6.5e-11 71.6 122 35.2
Sed0023714 Sechium edule HOM05D007331 ORTHO05D009273 8.5e-11 71.2 104 37.5
ATR0730G104 Amborella trichopoda HOM05D007331 ORTHO05D009273 1.1e-10 70.9 128 33.6
Manes.05G191300 Manihot esculenta HOM05D007331 ORTHO05D009273 1.1e-10 70.9 111 39.6
Lalb_Chr08g0240101 Lupinus albus HOM05D007331 ORTHO05D009273 1.5e-10 70.5 113 38.1
Cfa016463 Carpinus fangiana HOM05D007331 ORTHO05D009273 1.9e-10 70.1 111 39.6
CDE04G0075 Ceratophyllum demersum HOM05D007331 ORTHO05D009273 3.2e-10 69.3 104 39.4
SGA_v2.0_scaffold192G40527 Striga asiatica HOM05D007331 ORTHO05D009273 3.2e-10 69.3 103 33.0
Dinv35349 Davidia involucrata HOM05D007331 ORTHO05D009273 4.2e-10 68.9 103 35.9
FAN01G2673 Fragaria x ananassa HOM05D007331 ORTHO05D009273 7.2e-10 68.2 111 38.7
RcHm_v2.0_Chr1g0381631 Rosa chinensis HOM05D007331 ORTHO05D009273 7.2e-10 68.2 111 37.8
GSVIVG01010322001 Vitis vinifera HOM05D007331 ORTHO05D009273 7.2e-10 68.2 111 36.9
Zm00001eb361120 Zea mays HOM05D007331 ORTHO05D009273 7.2e-10 68.2 145 32.4
FvH4_7g32020 Fragaria vesca HOM05D007331 ORTHO05D009273 9.4e-10 67.8 111 37.8
Zm00001eb155420 Zea mays HOM05D007331 ORTHO05D009273 9.4e-10 67.8 162 30.2
Prupe.2G313600 Prunus persica HOM05D007331 ORTHO05D009273 2.1e-09 66.6 111 37.8
Phvul.009G050900 Phaseolus vulgaris HOM05D007331 ORTHO05D009273 4.7e-09 65.5 115 36.5
CSS0016118 Camellia sinensis var. sinensis HOM05D007331 ORTHO05D009273 6.1e-09 65.1 100 35.0
Nitab4.5_0005491g0010 Nicotiana tabacum HOM05D007331 ORTHO05D009273 6.1e-09 65.1 119 34.5
PGR142G4299 Punica granatum HOM05D007331 ORTHO05D009273 6.1e-09 65.1 120 34.2
CAN.G481.32 Capsicum annuum HOM05D007331 ORTHO05D009273 8.0e-09 64.7 133 32.3
Glyma.06G130800 Glycine max HOM05D007331 ORTHO05D009273 1.0e-08 64.3 104 32.7
Gohir.A12G248800 Gossypium hirsutum HOM05D007331 ORTHO05D009273 1.0e-08 64.3 111 35.1
Gorai.008G267700 Gossypium raimondii HOM05D007331 ORTHO05D009273 1.0e-08 64.3 111 35.1
Lj1g0000536 Lotus japonicus HOM05D007331 ORTHO05D009273 1.0e-08 64.3 90 37.8
Psat5g075920 Pisum sativum HOM05D007331 ORTHO05D009273 1.0e-08 64.3 114 36.8
SMO367G1270 Selaginella moellendorffii HOM05D007331 ORTHO05D009273 1.0e-08 64.3 138 32.6
Solyc03g082970.4 Solanum lycopersicum HOM05D007331 ORTHO05D009273 1.0e-08 64.3 119 33.6
Sopen03g022780 Solanum pennellii HOM05D007331 ORTHO05D009273 1.0e-08 64.3 119 33.6
Glyma.04G234000 Glycine max HOM05D007331 ORTHO05D009273 1.4e-08 63.9 104 32.7
PGSC0003DMG400018546 Solanum tuberosum HOM05D007331 ORTHO05D009273 1.4e-08 63.9 119 33.6
Atru.chr12.2246 Acer truncatum HOM05D007331 ORTHO05D009273 1.8e-08 63.5 120 35.8
Cc02_g01360 Coffea canephora HOM05D007331 ORTHO05D009273 1.8e-08 63.5 121 32.2
MD01G1223100 Malus domestica HOM05D007331 ORTHO05D009273 2.3e-08 63.2 111 36.0
Cpa.g.sc3.102 Carica papaya HOM05D007331 ORTHO05D009273 3.0e-08 62.8 103 35.0
CiPaw.05G198500 Carya illinoinensis HOM05D007331 ORTHO05D009273 3.0e-08 62.8 111 36.9
Eucgr.K00396 Eucalyptus grandis HOM05D007331 ORTHO05D009273 3.0e-08 62.8 116 33.6
FAN10G2274 Fragaria x ananassa HOM05D007331 ORTHO05D009273 3.0e-08 62.8 86 40.7
FAN10G3896 Fragaria x ananassa HOM05D007331 ORTHO05D009273 3.0e-08 62.8 86 40.7
Medtr3g491820 Medicago truncatula HOM05D007331 ORTHO05D009273 3.0e-08 62.8 114 35.1
Nn5g27567 Nelumbo nucifera HOM05D007331 ORTHO05D009273 3.0e-08 62.8 85 36.5
QL09p007955 Quercus lobata HOM05D007331 ORTHO05D009273 3.0e-08 62.8 111 36.9
ECA238G3436 Erigeron canadensis HOM05D007331 ORTHO05D009273 4.0e-08 62.4 124 36.3
Haze_00231 Corylus avellana HOM05D007331 ORTHO05D009273 5.2e-08 62.0 98 36.7
Potri.015G010700 Populus trichocarpa HOM05D007331 ORTHO05D009273 5.2e-08 62.0 104 35.6
Rhsim03G0210700 Rhododendron simsii HOM05D007331 ORTHO05D009273 5.2e-08 62.0 124 35.5
CANSAT21G1988 Cannabis sativa HOM05D007331 ORTHO05D009273 1.2e-07 60.8 104 36.5
CARHR189150 Cardamine hirsuta HOM05D007331 ORTHO05D009273 1.2e-07 60.8 104 31.7
FAN06G3260 Fragaria x ananassa HOM05D007331 ORTHO05D009273 1.2e-07 60.8 86 38.4
Carub.0006s2210 Capsella rubella HOM05D007331 ORTHO05D009273 1.5e-07 60.5 104 31.7
Lsat_1_v5_gn_2_136240 Lactuca sativa HOM05D007331 ORTHO05D009273 2.0e-07 60.1 128 33.6
Nitab4.5_0000548g0030 Nicotiana tabacum HOM05D007331 ORTHO05D008325 2.0e-07 60.1 132 28.8
Peaxi162Scf00740g00023 Petunia axillaris HOM05D007331 ORTHO05D009273 2.0e-07 60.1 97 33.0
AUR62006072 Chenopodium quinoa HOM05D007331 ORTHO05D009273 2.6e-07 59.7 119 31.9
Ca_16722_v3 Cicer arietinum L. HOM05D007331 ORTHO05D009273 2.6e-07 59.7 104 34.6
VMungo1309G2222 Vigna mungo HOM05D007331 ORTHO05D009273 2.6e-07 59.7 130 33.8
Aqoxy5G04308 Aquilegia oxysepala HOM05D007331 ORTHO05D009273 3.4e-07 59.3 135 30.4
AL6G35810 Arabidopsis lyrata HOM05D007331 ORTHO05D009273 3.4e-07 59.3 140 28.6
AT5G24314 Arabidopsis thaliana HOM05D007331 ORTHO05D009273 3.4e-07 59.3 140 28.6
DCAR_014548 Daucus carota HOM05D007331 ORTHO05D009273 3.4e-07 59.3 127 31.5
Sp2g23030 Schrenkiella parvula HOM05D007331 ORTHO05D009273 5.7e-07 58.5 104 31.7
Ciclev10022582m.g Citrus clementina HOM05D007331 ORTHO05D009273 7.5e-07 58.2 111 36.9
THA.LOC104798905 Tarenaya hassleriana HOM05D007331 ORTHO05D009273 7.5e-07 58.2 104 33.7
Actinidia34232 Actinidia chinensis HOM05D007331 ORTHO05D009273 9.8e-07 57.8 101 31.7
BcaNung01223 Brassica carinata HOM05D007331 ORTHO05D009273 1.3e-06 57.4 104 31.7
Thhalv10005048m.g Eutrema salsugineum HOM05D007331 ORTHO05D009273 1.3e-06 57.4 104 33.7
TWI39G0006 Tripterygium wilfordii HOM05D007331 ORTHO05D009273 1.3e-06 57.4 102 32.4
Thecc.03G201300 Theobroma cacao HOM05D007331 ORTHO05D009273 1.7e-06 57.0 98 31.6
unitig_92.g28248 Utricularia gibba HOM05D007331 ORTHO05D009273 1.7e-06 57.0 99 30.3
TPR.G33621 Trifolium pratense HOM05D007331 ORTHO05D009273 2.8e-06 56.2 104 32.7
A06p35140 Brassica napus HOM05D007331 ORTHO05D009273 3.7e-06 55.8 104 30.8
C07p43430 Brassica napus HOM05D007331 ORTHO05D009273 3.7e-06 55.8 104 30.8
BolC7t44869H Brassica oleracea HOM05D007331 ORTHO05D009273 3.7e-06 55.8 104 30.8
BraA06t26434Z Brassica rapa HOM05D007331 ORTHO05D009273 3.7e-06 55.8 104 30.8
AUR62035555 Chenopodium quinoa HOM05D007331 ORTHO05D009273 3.7e-06 55.8 97 33.0
HanXRQChr07g0206431 Helianthus annuus HOM05D007331 ORTHO05D009273 4.9e-06 55.5 104 33.7


User provided reference genes

Program Settings