Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 5.1e-57 224.6 147 100.0
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 1.0e-25 120.6 149 61.1
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 1.8e-25 119.8 140 60.7
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 2.3e-25 119.4 137 62.0
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 1.2e-24 117.1 137 60.6
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 1.2e-24 117.1 137 60.6
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 2.0e-24 116.3 139 59.7
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 2.6e-24 115.9 139 59.7
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 4.4e-24 115.2 135 60.7
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 4.4e-24 115.2 137 59.9
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 9.8e-24 114.0 143 58.0
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 9.8e-24 114.0 135 60.7
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 1.7e-23 113.2 135 59.3
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 2.2e-23 112.8 140 57.9
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 2.8e-23 112.5 140 59.3
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 3.7e-23 112.1 137 59.9
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 4.8e-23 111.7 137 60.6
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 6.3e-23 111.3 135 59.3
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 8.3e-23 110.9 140 57.9
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.1e-22 110.5 137 60.6
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 1.8e-22 109.8 132 58.3
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 2.4e-22 109.4 130 58.5
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 2.4e-22 109.4 138 58.7
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 2.4e-22 109.4 140 57.9
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 3.1e-22 109.0 137 58.4
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 3.1e-22 109.0 135 48.9
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 4.1e-22 108.6 140 58.6
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 4.1e-22 108.6 135 57.8
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 4.1e-22 108.6 132 59.1
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 5.4e-22 108.2 137 59.1
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 7.0e-22 107.8 137 59.9
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 9.1e-22 107.5 142 54.2
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 1.6e-21 106.7 137 49.6
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.6e-21 106.7 136 58.1
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.6e-21 106.7 136 58.1
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 2.0e-21 106.3 139 44.6
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 2.7e-21 105.9 131 59.5
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 2.7e-21 105.9 128 60.9
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 3.5e-21 105.5 140 55.7
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 4.5e-21 105.1 138 57.2
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 5.9e-21 104.8 132 53.0
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 5.9e-21 104.8 140 50.7
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 5.9e-21 104.8 140 54.3
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 5.9e-21 104.8 132 57.6
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 5.9e-21 104.8 138 57.2
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 7.7e-21 104.4 139 56.1
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 7.7e-21 104.4 128 37.5
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 1.0e-20 104.0 137 56.2
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 1.0e-20 104.0 132 54.5
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 1.0e-20 104.0 131 59.5
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 1.3e-20 103.6 140 59.3
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 1.3e-20 103.6 138 57.2
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 1.3e-20 103.6 130 56.9
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 1.7e-20 103.2 140 53.6
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 1.7e-20 103.2 139 56.8
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 1.7e-20 103.2 132 56.1
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 2.3e-20 102.8 135 59.3
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 2.9e-20 102.4 140 49.3
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 2.9e-20 102.4 127 60.6
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 3.8e-20 102.1 137 56.2
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 5.0e-20 101.7 138 55.8
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 6.6e-20 101.3 136 54.4
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 8.6e-20 100.9 137 51.1
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 8.6e-20 100.9 135 54.1
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 1.1e-19 100.5 137 57.7
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 1.1e-19 100.5 137 57.7
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 1.1e-19 100.5 138 55.8
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 1.1e-19 100.5 137 43.8
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 1.1e-19 100.5 88 46.6
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 1.1e-19 100.5 129 57.4
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 1.1e-19 100.5 133 55.6
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 1.1e-19 100.5 133 55.6
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 1.5e-19 100.1 128 56.2
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 1.5e-19 100.1 133 54.9
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 2.5e-19 99.4 137 55.5
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 2.5e-19 99.4 133 54.9
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 3.3e-19 99.0 122 61.5
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 3.3e-19 99.0 137 56.9
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 4.2e-19 98.6 127 45.7
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 4.2e-19 98.6 132 56.8
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 4.2e-19 98.6 117 59.8
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 5.5e-19 98.2 126 59.5
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 7.2e-19 97.8 137 53.3
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 9.5e-19 97.4 128 60.9
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 1.2e-18 97.1 127 57.5
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 2.1e-18 96.3 137 56.9
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 2.1e-18 96.3 133 54.9
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 2.8e-18 95.9 140 53.6
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 3.6e-18 95.5 140 51.4
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 4.7e-18 95.1 83 45.8
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 6.1e-18 94.7 128 52.3
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 8.0e-18 94.4 133 51.1
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 8.0e-18 94.4 127 60.6
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 1.4e-17 93.6 140 53.6
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 2.3e-17 92.8 131 55.7
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 2.3e-17 92.8 131 55.7
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 3.0e-17 92.4 134 34.3
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 4.0e-17 92.0 81 45.7
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 5.2e-17 91.7 82 41.5
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 8.9e-17 90.9 138 55.8
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 1.2e-16 90.5 81 45.7
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 3.4e-16 89.0 140 35.0
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 5.7e-16 88.2 112 62.5
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 1.3e-15 87.0 137 45.3
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 1.8e-14 83.2 121 32.2
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 7.0e-14 81.3 108 38.0
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 3.5e-13 79.0 95 68.4
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 1.0e-12 77.4 72 41.7
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 5.0e-12 75.1 72 40.3
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 8.6e-12 74.3 122 50.0
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 3.3e-11 72.4 65 46.2
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 5.6e-11 71.6 95 55.8
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 1.6e-10 70.1 133 37.6
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 2.1e-10 69.7 100 63.0
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 2.8e-10 69.3 119 43.7
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 4.7e-10 68.6 117 50.4
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 6.1e-10 68.2 133 42.9
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 8.0e-10 67.8 122 30.3
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 2.6e-08 62.8 118 29.7
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 2.6e-08 62.8 118 29.7
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 2.6e-08 62.8 118 29.7
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 5.8e-08 61.6 120 28.3
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 5.8e-08 61.6 120 28.3
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 1.3e-07 60.5 122 29.5
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 4.9e-07 58.5 99 31.3
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 5.4e-06 55.1 58 39.7
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 7.0e-06 54.7 87 33.3


User provided reference genes

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