Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0069s0031 Marchantia polymorpha HOM05D002376 ORTHO05D008821 2.6e-68 261.9 133 100.0
AagrBONN_evm.TU.Sc2ySwM_228.448 Anthoceros agrestis HOM05D002376 ORTHO05D008821 8.8e-40 167.2 120 67.5
Pp3c20_8500 Physcomitrium patens HOM05D002376 ORTHO05D008821 1.6e-33 146.4 117 58.1
Ah.15g096510 Amaranthus hybridus HOM05D002376 ORTHO05D008821 2.3e-32 142.5 123 55.3
Manes.18G140300 Manihot esculenta HOM05D002376 ORTHO05D008821 4.4e-31 138.3 122 54.1
RcHm_v2.0_Chr5g0072361 Rosa chinensis HOM05D002376 ORTHO05D008821 4.4e-31 138.3 122 50.8
ATR0586G003 Amborella trichopoda HOM05D002376 ORTHO05D008821 7.5e-31 137.5 123 50.4
PGR102G2282 Punica granatum HOM05D002376 ORTHO05D008821 7.5e-31 137.5 121 54.5
Eucgr.B04014 Eucalyptus grandis HOM05D002376 ORTHO05D008821 2.2e-30 136.0 122 53.3
Eucgr.B04017 Eucalyptus grandis HOM05D002376 ORTHO05D008821 2.2e-30 136.0 122 53.3
LjContig00141g0012114 Lotus japonicus HOM05D002376 ORTHO05D008821 2.2e-30 136.0 120 52.5
Actinidia23182 Actinidia chinensis HOM05D002376 ORTHO05D008821 2.8e-30 135.6 116 53.4
Glyma.02G234100 Glycine max HOM05D002376 ORTHO05D008821 2.8e-30 135.6 120 52.5
Phvul.008G249600 Phaseolus vulgaris HOM05D002376 ORTHO05D008821 2.8e-30 135.6 120 52.5
vmacro02895 Vaccinium macrocarpon HOM05D002376 ORTHO05D008821 3.7e-30 135.2 122 51.6
CSS0028475 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 4.8e-30 134.8 122 50.8
EL10Ac7g15863 Beta vulgaris HOM05D002376 ORTHO05D008821 1.1e-29 133.7 124 50.0
TWI75G1859 Tripterygium wilfordii HOM05D002376 ORTHO05D008821 1.1e-29 133.7 120 53.3
CiPaw.13G066200 Carya illinoinensis HOM05D002376 ORTHO05D008821 1.4e-29 133.3 122 51.6
TPR.G17753 Trifolium pratense HOM05D002376 ORTHO05D008821 1.4e-29 133.3 120 52.5
CANSAT54G2364 Cannabis sativa HOM05D002376 ORTHO05D008821 1.8e-29 132.9 122 53.3
CSS0003249 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 3.1e-29 132.1 122 50.8
Dinv28710 Davidia involucrata HOM05D002376 ORTHO05D008821 3.1e-29 132.1 122 52.5
Prupe.6G044100 Prunus persica HOM05D002376 ORTHO05D008821 3.1e-29 132.1 122 50.0
Cfa010938 Carpinus fangiana HOM05D002376 ORTHO05D008821 4.1e-29 131.7 122 50.8
Eucgr.B02271 Eucalyptus grandis HOM05D002376 ORTHO05D008821 5.3e-29 131.3 106 57.5
Eucgr.L02725 Eucalyptus grandis HOM05D002376 ORTHO05D008821 5.3e-29 131.3 106 57.5
AUR62009722 Chenopodium quinoa HOM05D002376 ORTHO05D008821 7.0e-29 131.0 123 52.0
FvH4_3g40170 Fragaria vesca HOM05D002376 ORTHO05D008821 7.0e-29 131.0 122 48.4
HanXRQChr01g0012551 Helianthus annuus HOM05D002376 ORTHO05D008821 7.0e-29 131.0 123 51.2
COL.COLO4_11184 Corchorus olitorius HOM05D002376 ORTHO05D008821 9.1e-29 130.6 120 52.5
MELO3C025682.2 Cucumis melo HOM05D002376 ORTHO05D008821 9.1e-29 130.6 122 50.0
MD11G1061300 Malus domestica HOM05D002376 ORTHO05D008821 9.1e-29 130.6 122 50.0
AUR62036225 Chenopodium quinoa HOM05D002376 ORTHO05D008821 1.2e-28 130.2 123 52.0
CsaV3_6G019000 Cucumis sativus L. HOM05D002376 ORTHO05D008821 1.2e-28 130.2 122 50.0
Lalb_Chr17g0345531 Lupinus albus HOM05D002376 ORTHO05D008821 1.2e-28 130.2 120 51.7
TAR623G0666 Trochodendron aralioides HOM05D002376 ORTHO05D008821 1.2e-28 130.2 122 49.2
ClCG02G019170 Citrullus lanatus HOM05D002376 ORTHO05D008821 1.6e-28 129.8 122 50.0
GSVIVG01024598001 Vitis vinifera HOM05D002376 ORTHO05D008821 1.6e-28 129.8 120 51.7
Aqoxy4G02143 Aquilegia oxysepala HOM05D002376 ORTHO05D008821 2.0e-28 129.4 120 50.0
Cc01_g09100 Coffea canephora HOM05D002376 ORTHO05D008821 2.0e-28 129.4 122 50.8
Haze_24442 Corylus avellana HOM05D002376 ORTHO05D008821 2.0e-28 129.4 122 50.0
Duzib168G1911 Durio zibethinus HOM05D002376 ORTHO05D008821 2.0e-28 129.4 123 51.2
Migut.H01101 Erythranthe guttata HOM05D002376 ORTHO05D008821 2.7e-28 129.0 123 50.4
Thecc.09G361000 Theobroma cacao HOM05D002376 ORTHO05D008821 2.7e-28 129.0 124 50.0
PSO170G0682 Papaver somniferum HOM05D002376 ORTHO05D008821 3.5e-28 128.6 120 48.3
SalBow2G0685 Salvia bowleyana HOM05D002376 ORTHO05D008821 3.5e-28 128.6 123 52.8
arahy.Tifrunner.gnm1.ann1.F02FPT Arachis hypogaea HOM05D002376 ORTHO05D008821 4.5e-28 128.3 120 50.8
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 4.5e-28 128.3 122 50.0
Medtr5g074880 Medicago truncatula HOM05D002376 ORTHO05D008821 7.7e-28 127.5 120 49.2
Sed0011436 Sechium edule HOM05D002376 ORTHO05D008821 1.3e-27 126.7 122 49.2
THA.LOC104800780 Tarenaya hassleriana HOM05D002376 ORTHO05D008821 1.3e-27 126.7 123 48.0
CDE06G1730 Ceratophyllum demersum HOM05D002376 ORTHO05D008821 1.7e-27 126.3 120 50.0
Lj1A123G47 Lonicera japonica HOM05D002376 ORTHO05D008821 1.7e-27 126.3 122 50.8
Oeu064671.1 Olea europaea HOM05D000883 ORTHO05D002942 1.7e-27 126.3 121 50.4
QL03p067094 Quercus lobata HOM05D002376 ORTHO05D008821 1.7e-27 126.3 122 50.0
Lsat_1_v5_gn_5_175460 Lactuca sativa HOM05D002376 ORTHO05D008821 2.2e-27 125.9 121 48.8
Os11g0112300 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 2.2e-27 125.9 122 49.2
Rhsim13G0061900 Rhododendron simsii HOM05D002376 ORTHO05D008821 2.9e-27 125.6 139 46.0
TAR287G0002 Trochodendron aralioides HOM05D002376 ORTHO05D008821 3.8e-27 125.2 122 49.2
HPP92_009016 Vanilla planifolia HOM05D002376 ORTHO05D008821 5.0e-27 124.8 120 48.3
Aa31LG5G6370 Aethionema arabicum HOM05D002376 ORTHO05D008821 8.5e-27 124.0 123 48.8
Gorai.003G151600 Gossypium raimondii HOM05D002376 ORTHO05D008821 8.5e-27 124.0 122 49.2
Gohir.D03G144300 Gossypium hirsutum HOM05D002376 ORTHO05D008821 1.1e-26 123.6 122 49.2
Nitab4.5_0000755g0130 Nicotiana tabacum HOM05D002376 ORTHO05D008821 1.1e-26 123.6 123 50.4
Peaxi162Scf00003g00413 Petunia axillaris HOM05D002376 ORTHO05D008821 1.1e-26 123.6 121 49.6
SalBow2G2295 Salvia bowleyana HOM05D002376 ORTHO05D008821 1.1e-26 123.6 123 49.6
Nitab4.5_0009324g0020 Nicotiana tabacum HOM05D002376 ORTHO05D008821 1.5e-26 123.2 123 50.4
Sabra13G0126300 Salix brachista HOM05D002376 ORTHO05D008821 1.5e-26 123.2 118 52.5
BcaB01g04113 Brassica carinata HOM05D002376 ORTHO05D008821 4.2e-26 121.7 120 49.2
DCAR_014464 Daucus carota HOM05D002376 ORTHO05D008821 4.2e-26 121.7 120 46.7
Gohir.A03G024200 Gossypium hirsutum HOM05D002376 ORTHO05D008821 4.2e-26 121.7 122 48.4
Psat2g052040 Pisum sativum HOM05D002376 ORTHO05D008821 7.2e-26 120.9 150 42.7
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 9.4e-26 120.6 120 48.3
CARHR123650 Cardamine hirsuta HOM05D002376 ORTHO05D008821 9.4e-26 120.6 121 49.6
Carub.0004s1148 Capsella rubella HOM05D002376 ORTHO05D008821 1.2e-25 120.2 121 47.9
Ciclev10017044m.g Citrus clementina HOM05D002376 ORTHO05D008821 1.2e-25 120.2 123 45.5
Potri.013G156700 Populus trichocarpa HOM05D002376 ORTHO05D008821 2.1e-25 119.4 118 49.2
Sp4g12890 Schrenkiella parvula HOM05D002376 ORTHO05D008821 2.7e-25 119.0 121 48.8
BcaC01g05988 Brassica carinata HOM05D002376 ORTHO05D008821 4.7e-25 118.2 118 48.3
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 4.7e-25 118.2 118 48.3
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 4.7e-25 118.2 118 48.3
Actinidia32596 Actinidia chinensis HOM05D002376 ORTHO05D008821 6.1e-25 117.9 102 53.9
Thhalv10017367m.g Eutrema salsugineum HOM05D002376 ORTHO05D008821 6.1e-25 117.9 120 47.5
Lalb_Chr10g0103701 Lupinus albus HOM05D002376 ORTHO05D008821 6.1e-25 117.9 120 46.7
Solyc11g068450.2 Solanum lycopersicum HOM05D002376 ORTHO05D008821 8.0e-25 117.5 120 48.3
Sopen11g027160 Solanum pennellii HOM05D002376 ORTHO05D008821 8.0e-25 117.5 120 48.3
Atru.chr6.2418 Acer truncatum HOM05D002376 ORTHO05D008821 1.0e-24 117.1 120 45.0
AT2G30330 Arabidopsis thaliana HOM05D002376 ORTHO05D008821 1.0e-24 117.1 123 46.3
AL4G25190 Arabidopsis lyrata HOM05D002376 ORTHO05D008821 1.4e-24 116.7 120 47.5
PGSC0003DMG400026358 Solanum tuberosum HOM05D002376 ORTHO05D008821 1.8e-24 116.3 120 46.7
CAN.G1358.8 Capsicum annuum HOM05D002376 ORTHO05D008821 5.2e-24 114.8 97 55.7
CBR_g4891 Chara braunii HOM05D006348 ORTHO05D008261 2.6e-23 112.5 122 45.1
Prupe.6G095400 Prunus persica HOM05D002376 ORTHO05D008821 9.8e-23 110.5 120 45.8
SMO361G0428 Selaginella moellendorffii HOM05D002376 ORTHO05D008821 2.2e-22 109.4 101 52.5
arahy.Tifrunner.gnm1.ann1.6WW78Y Arachis hypogaea HOM05D002376 ORTHO05D008821 2.8e-22 109.0 163 37.4
PSO017G2121 Papaver somniferum HOM05D002376 ORTHO05D008821 5.4e-21 104.8 106 46.2
MBI15_g06972_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 1.2e-20 103.6 167 36.5
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 2.9e-19 99.0 92 52.2
Dinv12257 Davidia involucrata HOM05D002376 ORTHO05D008821 4.2e-18 95.1 122 42.6
MD03G1059100 Malus domestica HOM05D002376 ORTHO05D008821 9.5e-18 94.0 72 58.3
CSS0017661 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 1.6e-17 93.2 94 47.9
Ca_05691_v3 Cicer arietinum L. HOM05D002376 ORTHO05D008821 2.8e-17 92.4 92 47.8
COL.COLO4_11185 Corchorus olitorius HOM05D002376 ORTHO05D008821 3.6e-17 92.0 92 51.1
SGA_v2.0_scaffold77G25373 Striga asiatica HOM05D002376 ORTHO05D008821 3.6e-17 92.0 94 48.9
Cpa.g.sc2.331 Carica papaya HOM05D002376 ORTHO05D008821 4.7e-17 91.7 94 47.9
MCO04G004 Micromonas commoda HOM05D002376 ORTHO05D008821 8.0e-17 90.9 118 36.4
Nn4g26021 Nelumbo nucifera HOM05D002376 ORTHO05D008821 8.0e-17 90.9 95 46.3
FAN21G3738 Fragaria x ananassa HOM05D002376 ORTHO05D008821 1.8e-16 89.7 94 44.7
FAN11G0211 Fragaria x ananassa HOM05D002376 ORTHO05D008821 2.3e-16 89.4 94 44.7
FAN16G0225 Fragaria x ananassa HOM05D002376 ORTHO05D008821 6.8e-16 87.8 94 43.6
Hund18966 Selenicereus undatus HOM05D002376 ORTHO05D008821 6.8e-16 87.8 94 44.7
Sc06g0008070 Simmondsia chinensis HOM05D002376 ORTHO05D008821 8.9e-16 87.4 94 45.7
Zm00001eb276260 Zea mays HOM05D002376 ORTHO05D008821 4.4e-15 85.1 77 54.5
MBI07_g35969_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 2.0e-12 76.3 70 52.9
Os12g0416500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 3.9e-11 72.0 83 44.6
MBI15_g36803_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 1.6e-09 66.6 99 39.4
Os12g0111900 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 1.6e-09 66.6 69 47.8
MD03G1104100 Malus domestica HOM05D002376 ORTHO05D008821 8.9e-08 60.8 100 39.0
SHI19244 Sapria himalayana HOM05D002376 ORTHO05D008821 8.9e-08 60.8 90 38.9
Cre01.g021000 Chlamydomonas reinhardtii HOM05D002376 ORTHO05D147271 8.3e-06 54.3 111 29.7


User provided reference genes

Program Settings