Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.5e-164 582.8 298 100.0
Mapoly0067s0103 Marchantia polymorpha HOM05D005205 ORTHO05D253529 5.0e-35 152.5 298 36.2
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.5e-26 124.4 292 30.8
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 5.2e-24 115.9 153 42.5
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 7.5e-23 112.1 327 33.0
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 1.2e-17 94.7 152 35.5
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 4.7e-17 92.8 147 39.5
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 1.4e-16 91.3 163 39.3
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 1.4e-16 91.3 149 37.6
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 2.3e-16 90.5 151 36.4
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 6.8e-16 89.0 147 36.7
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.2e-15 88.2 147 36.7
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 1.2e-15 88.2 163 37.4
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 1.5e-15 87.8 147 37.4
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 1.5e-15 87.8 147 36.1
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.5e-15 87.8 147 36.7
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 1.5e-15 87.8 163 38.0
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 1.5e-15 87.8 147 36.1
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 2.0e-15 87.4 147 38.1
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 2.0e-15 87.4 147 38.1
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 2.0e-15 87.4 149 36.2
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 2.0e-15 87.4 163 38.7
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 2.0e-15 87.4 151 36.4
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 2.6e-15 87.0 151 35.8
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 2.6e-15 87.0 147 36.7
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 2.6e-15 87.0 153 33.3
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 2.6e-15 87.0 147 38.1
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 3.4e-15 86.7 147 36.1
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 4.4e-15 86.3 151 32.5
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 4.4e-15 86.3 151 32.5
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 4.4e-15 86.3 147 35.4
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 5.8e-15 85.9 148 36.5
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 7.5e-15 85.5 147 35.4
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 1.3e-14 84.7 147 38.8
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 1.7e-14 84.3 151 35.1
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 2.2e-14 84.0 147 34.7
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 2.2e-14 84.0 146 37.0
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 2.2e-14 84.0 147 35.4
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 2.2e-14 84.0 147 33.3
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 2.9e-14 83.6 148 37.2
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 2.9e-14 83.6 151 35.8
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 2.9e-14 83.6 147 33.3
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 3.7e-14 83.2 156 34.6
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 4.9e-14 82.8 152 35.5
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 4.9e-14 82.8 147 34.7
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 4.9e-14 82.8 147 37.4
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 4.9e-14 82.8 147 36.1
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 8.3e-14 82.0 147 36.1
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 8.3e-14 82.0 147 34.7
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 8.3e-14 82.0 147 36.1
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.1e-13 81.6 147 35.4
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 1.1e-13 81.6 147 35.4
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.4e-13 81.3 147 35.4
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 1.4e-13 81.3 147 35.4
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 1.4e-13 81.3 147 36.1
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 1.4e-13 81.3 147 35.4
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 1.9e-13 80.9 143 36.4
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 1.9e-13 80.9 147 36.7
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.9e-13 80.9 147 35.4
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 2.4e-13 80.5 147 34.0
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 3.2e-13 80.1 147 36.1
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 3.2e-13 80.1 147 35.4
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 4.1e-13 79.7 147 34.7
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 5.4e-13 79.3 143 32.9
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 5.4e-13 79.3 115 40.0
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 5.4e-13 79.3 147 35.4
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 5.4e-13 79.3 147 35.4
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 5.4e-13 79.3 128 38.3
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 7.1e-13 79.0 149 35.6
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 7.1e-13 79.0 147 35.4
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 7.1e-13 79.0 149 37.6
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 7.1e-13 79.0 147 34.7
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 7.1e-13 79.0 147 34.0
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 9.2e-13 78.6 126 38.9
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 9.2e-13 78.6 149 35.6
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 9.2e-13 78.6 126 38.9
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 9.2e-13 78.6 126 38.9
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 9.2e-13 78.6 149 35.6
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 9.2e-13 78.6 164 36.0
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 1.2e-12 78.2 147 33.3
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 1.2e-12 78.2 147 36.1
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 1.6e-12 77.8 147 34.7
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 2.1e-12 77.4 118 37.3
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 2.7e-12 77.0 147 34.0
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 2.7e-12 77.0 149 35.6
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 3.5e-12 76.6 147 33.3
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 4.6e-12 76.3 147 34.7
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 7.8e-12 75.5 126 38.1
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 7.8e-12 75.5 126 38.1
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 1.0e-11 75.1 149 34.2
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 1.0e-11 75.1 147 35.4
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 1.0e-11 75.1 149 34.9
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 1.3e-11 74.7 149 34.9
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 1.7e-11 74.3 154 33.8
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 3.0e-11 73.6 147 32.0
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 3.0e-11 73.6 147 32.0
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 3.0e-11 73.6 147 32.0
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 3.9e-11 73.2 149 32.9
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 3.9e-11 73.2 147 32.7
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 5.1e-11 72.8 148 33.8
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 5.1e-11 72.8 149 32.9
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 5.1e-11 72.8 154 33.1
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 6.6e-11 72.4 147 32.0
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 1.1e-10 71.6 135 32.6
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 1.5e-10 71.2 149 33.6
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 2.5e-10 70.5 149 32.9
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 3.6e-09 66.6 189 32.3
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 1.1e-08 65.1 119 38.7
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.4e-08 64.7 97 43.3
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 5.2e-08 62.8 119 31.1
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 5.2e-08 62.8 151 29.1
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 5.2e-08 62.8 84 36.9
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 1.7e-06 57.8 99 33.3
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 3.8e-06 56.6 88 42.0
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 4.9e-06 56.2 84 33.3
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 6.4e-06 55.8 84 34.5


User provided reference genes

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