Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 3.2e-176 621.7 323 100.0
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.3e-33 147.9 299 38.8
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.4e-22 110.5 185 37.3
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.4e-19 101.3 327 33.0
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 1.8e-17 94.4 173 36.4
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 5.7e-16 89.4 162 38.3
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 1.3e-15 88.2 158 36.7
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 6.3e-15 85.9 128 40.6
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 8.2e-15 85.5 253 29.6
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 1.1e-14 85.1 160 36.2
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 2.4e-14 84.0 146 39.0
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 3.1e-14 83.6 162 35.8
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 4.1e-14 83.2 162 35.8
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 5.3e-14 82.8 163 33.7
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 5.3e-14 82.8 159 35.8
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 5.3e-14 82.8 160 36.2
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 6.9e-14 82.4 159 36.5
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 6.9e-14 82.4 159 36.5
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 6.9e-14 82.4 151 36.4
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 9.0e-14 82.0 160 35.0
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.2e-13 81.6 119 43.7
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 1.2e-13 81.6 147 36.7
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 1.2e-13 81.6 147 37.4
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 1.2e-13 81.6 162 35.8
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 1.2e-13 81.6 147 36.7
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 1.2e-13 81.6 162 35.8
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 1.2e-13 81.6 284 28.2
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 1.2e-13 81.6 160 35.0
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 1.5e-13 81.3 125 40.0
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 2.0e-13 80.9 181 34.3
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 2.6e-13 80.5 160 35.0
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 3.4e-13 80.1 128 38.3
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 3.4e-13 80.1 127 38.6
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 4.5e-13 79.7 161 34.2
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 4.5e-13 79.7 219 32.0
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 4.5e-13 79.7 219 32.0
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 4.5e-13 79.7 151 34.4
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 5.9e-13 79.3 147 33.3
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 5.9e-13 79.3 147 34.0
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 7.7e-13 79.0 162 34.6
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 7.7e-13 79.0 162 35.2
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 7.7e-13 79.0 162 34.6
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 7.7e-13 79.0 162 34.6
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 7.7e-13 79.0 162 35.2
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 7.7e-13 79.0 152 35.5
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 7.7e-13 79.0 133 38.3
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 7.7e-13 79.0 219 32.4
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 1.0e-12 78.6 162 33.3
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 1.0e-12 78.6 162 33.3
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 1.0e-12 78.6 282 28.4
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 1.0e-12 78.6 160 33.8
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 1.3e-12 78.2 162 32.7
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 1.3e-12 78.2 162 32.7
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 1.3e-12 78.2 128 39.1
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.3e-12 78.2 160 33.8
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 1.3e-12 78.2 154 35.1
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 1.3e-12 78.2 144 36.1
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 1.7e-12 77.8 162 34.6
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 1.7e-12 77.8 128 37.5
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 1.7e-12 77.8 127 39.4
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.7e-12 77.8 219 31.5
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 1.7e-12 77.8 128 39.8
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 2.2e-12 77.4 162 32.7
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 2.9e-12 77.0 128 38.3
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.9e-12 77.0 246 28.9
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 2.9e-12 77.0 125 38.4
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 2.9e-12 77.0 166 33.1
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 3.8e-12 76.6 128 38.3
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 3.8e-12 76.6 128 38.3
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 3.8e-12 76.6 130 37.7
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 5.0e-12 76.3 253 28.1
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 5.0e-12 76.3 128 35.2
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 6.5e-12 75.9 172 32.0
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 6.5e-12 75.9 162 32.1
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 6.5e-12 75.9 160 33.1
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 6.5e-12 75.9 151 37.1
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 8.5e-12 75.5 147 35.4
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 1.4e-11 74.7 124 37.1
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 1.4e-11 74.7 128 36.7
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 1.4e-11 74.7 147 35.4
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 1.9e-11 74.3 126 38.1
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 2.5e-11 73.9 147 34.0
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 2.5e-11 73.9 141 34.8
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 3.2e-11 73.6 125 36.8
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 3.2e-11 73.6 160 33.8
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 3.2e-11 73.6 160 33.8
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 5.5e-11 72.8 128 36.7
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 7.2e-11 72.4 154 32.5
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 7.2e-11 72.4 219 28.3
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 7.2e-11 72.4 279 28.7
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 9.4e-11 72.0 268 27.6
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 9.4e-11 72.0 160 31.9
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 9.4e-11 72.0 160 31.9
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 1.2e-10 71.6 288 27.4
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 2.1e-10 70.9 125 37.6
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 2.1e-10 70.9 146 34.2
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 2.1e-10 70.9 126 36.5
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 2.7e-10 70.5 160 31.9
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 3.6e-10 70.1 147 32.0
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 6.1e-10 69.3 296 27.4
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 2.3e-09 67.4 152 32.9
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 2.3e-09 67.4 306 26.8
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 3.3e-08 63.5 281 27.0
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 4.3e-08 63.2 107 33.6
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 4.8e-07 59.7 285 26.7
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 4.8e-07 59.7 129 32.6
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 6.3e-07 59.3 100 41.0
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 1.8e-06 57.8 311 26.0
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 2.4e-06 57.4 298 25.2
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 5.3e-06 56.2 93 38.7
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 5.3e-06 56.2 131 30.5
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 6.9e-06 55.8 92 41.3


User provided reference genes

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