Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 0.0e+00 1291.6 755 100.0
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 1.5e-176 624.0 767 57.0
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 1.9e-176 623.6 776 59.1
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 1.3e-175 620.9 771 56.3
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 1.8e-174 617.1 771 56.2
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 5.3e-174 615.5 771 55.8
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 1.2e-170 604.4 769 55.8
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 3.6e-170 602.8 802 53.4
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 4.6e-170 602.4 771 55.1
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 2.3e-169 600.1 790 53.9
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 2.3e-169 600.1 765 56.1
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 8.8e-169 598.2 659 51.0
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 8.8e-169 598.2 754 55.4
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 5.7e-168 595.5 786 54.5
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 7.4e-168 595.1 654 51.2
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 2.8e-167 593.2 766 55.4
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 6.3e-167 592.0 668 48.8
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 8.2e-167 591.7 767 56.1
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 1.1e-166 591.3 771 56.4
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.1e-166 591.3 771 55.1
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.1e-166 591.3 771 55.3
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 1.4e-166 590.9 760 55.3
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 1.4e-166 590.9 775 56.9
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 1.8e-166 590.5 767 57.2
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 3.1e-166 589.7 768 56.9
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 3.1e-166 589.7 764 55.4
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 4.1e-166 589.3 764 55.5
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 1.2e-165 587.8 771 55.0
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.2e-165 587.8 771 55.0
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 2.6e-165 586.6 770 54.3
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 1.3e-164 584.3 771 54.7
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 1.3e-164 584.3 763 54.8
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.2e-164 583.6 790 54.6
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 2.2e-164 583.6 802 44.4
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 2.9e-164 583.2 799 53.3
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 3.8e-164 582.8 788 54.1
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 3.8e-164 582.8 769 55.1
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 8.5e-164 581.6 763 56.2
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 1.1e-163 581.3 770 53.9
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 7.2e-163 578.6 784 54.5
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 9.4e-163 578.2 834 51.2
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 4.7e-162 575.9 767 55.1
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 4.7e-162 575.9 767 55.1
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 7.9e-162 575.1 768 54.4
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 1.0e-161 574.7 785 54.0
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 1.0e-161 574.7 768 55.1
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 1.8e-161 573.9 765 56.1
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 2.3e-161 573.5 793 47.5
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 3.0e-161 573.2 806 46.2
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 3.9e-161 572.8 774 54.5
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 5.2e-161 572.4 655 49.5
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 6.7e-161 572.0 665 50.8
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 3.3e-160 569.7 765 56.9
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 3.3e-160 569.7 775 53.7
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 7.4e-160 568.5 790 52.4
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 1.3e-159 567.8 775 54.8
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 1.7e-159 567.4 763 54.3
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 2.2e-159 567.0 651 48.7
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 2.2e-159 567.0 769 53.2
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 6.3e-159 565.5 608 54.1
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 6.3e-159 565.5 768 55.7
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 6.3e-159 565.5 764 54.1
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 1.1e-158 564.7 768 53.5
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 1.1e-158 564.7 769 54.5
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 1.4e-158 564.3 765 54.6
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 1.4e-158 564.3 765 54.1
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 1.4e-158 564.3 785 53.1
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 1.8e-158 563.9 768 53.4
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 3.1e-158 563.1 769 54.4
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 4.1e-158 562.8 766 54.6
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 1.6e-157 560.8 769 54.4
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 2.0e-157 560.5 782 52.4
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 2.0e-157 560.5 764 55.0
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 3.5e-157 559.7 764 52.9
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 5.9e-157 558.9 768 53.3
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 1.3e-156 557.8 759 54.3
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.7e-156 557.4 764 54.3
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.9e-156 556.6 764 54.3
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 5.0e-156 555.8 765 54.4
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.5e-155 554.3 765 54.2
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.5e-155 554.3 769 53.8
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 2.5e-155 553.5 801 51.7
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 2.1e-154 550.4 780 53.6
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 2.7e-154 550.1 759 55.3
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 3.6e-154 549.7 768 53.9
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 4.7e-154 549.3 772 55.1
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 8.0e-154 548.5 765 53.7
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 1.0e-153 548.1 794 52.0
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 1.4e-153 547.7 766 53.9
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 1.5e-152 544.3 766 54.2
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.5e-152 544.3 814 50.9
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 7.5e-152 542.0 768 53.5
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 2.2e-151 540.4 761 52.4
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 1.1e-150 538.1 768 53.6
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 1.1e-150 538.1 769 53.3
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 1.1e-150 538.1 765 53.9
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 4.1e-150 536.2 767 53.6
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 4.1e-150 536.2 764 53.7
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 5.3e-150 535.8 858 47.9
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 2.7e-149 533.5 765 52.0
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 3.4e-144 516.5 870 48.2
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 1.3e-140 504.6 672 46.4
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 3.8e-140 503.1 698 54.4
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 3.4e-136 490.0 767 50.6
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 8.3e-135 485.3 764 48.7
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 1.7e-132 477.6 801 48.3
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 4.3e-131 473.0 830 46.7
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 1.8e-129 467.6 437 60.6
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 5.2e-129 466.1 613 44.9
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 8.9e-129 465.3 601 46.3
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 2.6e-128 463.8 770 46.6
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 3.0e-124 450.3 640 43.6
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 4.3e-123 446.4 454 53.3
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 4.0e-121 439.9 552 58.5
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 5.4e-118 429.5 656 42.5
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 3.5e-117 426.8 805 45.8
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 7.8e-117 425.6 569 44.8
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 2.5e-115 420.6 650 41.1
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 4.0e-81 307.0 350 67.7
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 6.9e-81 306.2 539 37.8
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 1.9e-78 298.1 346 68.5
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.5e-75 287.7 384 45.3
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 1.8e-73 281.6 763 32.4
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.0e-71 275.8 389 60.9
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 1.6e-66 258.5 306 70.9
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 1.1e-62 245.7 378 41.3
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 7.2e-62 243.0 715 32.6
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 9.4e-62 242.7 877 35.3
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 1.2e-56 225.7 342 42.7
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.7e-55 221.9 271 44.6
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-48 199.1 232 47.4
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 1.6e-45 188.7 490 30.8
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 1.0e-39 169.5 143 58.0
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.0e-37 159.8 233 41.6
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 1.8e-36 158.7 212 43.9
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.7e-35 153.7 98 74.5
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 5.3e-33 147.1 233 39.9
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 1.5e-30 139.0 484 26.9
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.1e-29 133.7 82 78.0
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.0e-29 133.3 82 76.8
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.8e-28 129.8 77 76.6
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.4e-27 127.9 113 56.6
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-26 125.9 89 67.4
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-24 119.4 67 80.6
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 1.3e-23 115.9 142 44.4
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 2.3e-23 115.2 163 47.9
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.5e-22 109.8 74 71.6
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.2e-21 109.4 58 86.2
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-21 109.4 60 83.3
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 9.8e-19 99.8 121 52.9
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 1.4e-17 95.9 84 59.5
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 1.6e-16 92.4 93 53.8
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 1.3e-15 89.4 125 44.0
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.1e-13 82.0 110 43.6
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 2.1e-13 82.0 140 39.3
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 2.0e-11 75.5 155 79.4
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 2.6e-11 75.1 157 79.6
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.8e-11 73.9 60 60.0
SEGI_01359 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 4.9e-10 70.9 95 44.2
SEGI_28507 Sequoiadendron giganteum HOM05D004098 ORTHO05D021823 2.4e-09 68.6 39 79.5
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.5e-08 64.7 47 53.2
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.3e-07 62.8 58 53.4
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 2.3e-07 62.0 186 26.9
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 3.0e-07 61.6 37 78.4
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.0e-07 61.6 39 71.8
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 3.9e-07 61.2 109 31.2
Gohir.1Z049608 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-06 59.7 50 46.0
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 1.1e-06 59.7 39 69.2
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 7.3e-06 57.0 149 36.2


User provided reference genes

Program Settings