Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 0.0e+00 4167.5 2193 100.0
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 0.0e+00 1313.1 1762 45.3
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 0.0e+00 1289.6 2303 39.6
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 0.0e+00 1239.9 1756 43.8
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1181.8 1740 41.3
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 1156.7 2026 37.8
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 1156.4 2007 38.4
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 1153.3 1986 38.8
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 1149.8 1700 41.5
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 1148.3 1987 37.9
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 1146.7 1693 41.5
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 0.0e+00 1146.3 769 83.7
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 1146.0 1754 40.6
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 1141.7 1791 39.6
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1140.9 1672 41.6
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1140.9 1965 37.9
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 1140.6 1965 37.8
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1139.4 1966 37.8
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 1137.5 1718 40.2
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1137.1 1670 40.4
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 1134.8 1675 41.4
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1132.9 1671 41.2
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1131.7 1672 41.1
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1128.2 1669 41.1
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1124.4 1706 40.9
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 1123.2 1717 40.8
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1117.4 1678 41.2
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1116.3 1638 41.1
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 1112.8 2004 38.0
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 1112.1 2063 36.5
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1110.5 1786 39.2
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1109.7 1991 37.7
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 1105.5 1727 39.8
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1099.3 1709 40.4
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 1099.3 1666 39.9
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1098.6 1714 40.1
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1097.4 1986 37.9
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 1095.5 1678 40.9
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 1095.5 2012 37.4
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 1095.1 1852 38.9
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 1094.7 2135 36.0
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1094.0 1671 39.7
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1094.0 1721 40.2
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1092.4 1982 37.0
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 1092.4 1759 38.6
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1090.5 1702 40.1
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1090.1 1641 40.0
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 1085.9 1705 39.6
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 1085.9 1705 39.2
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1085.5 1670 40.4
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 1084.3 1693 39.8
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1078.9 1727 38.9
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1077.4 1727 38.9
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1076.6 1853 37.5
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 1.5e-311 1074.3 2002 36.9
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 1.5e-311 1073.9 1736 38.9
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 1.5e-311 1073.5 1991 36.4
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 6.0e-311 1072.0 1765 38.1
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 3.9e-310 1069.3 2007 36.8
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 6.6e-310 1068.5 1673 38.7
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 1.5e-309 1067.4 1621 40.6
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 1.5e-309 1067.4 2002 36.3
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 1.9e-309 1067.0 1851 37.4
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 3.3e-309 1066.2 1707 39.6
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 1.6e-308 1063.9 1690 39.1
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 2.8e-308 1063.1 1756 38.4
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 1.8e-307 1060.4 1998 35.9
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 4.0e-307 1059.3 1757 38.5
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 5.3e-307 1058.9 2204 35.2
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 9.9e-306 1054.7 1738 37.9
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 3.2e-304 1049.7 2071 36.1
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 2.1e-300 1036.9 1842 38.2
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 9.0e-299 1031.6 1566 40.4
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 3.8e-297 1026.2 1682 38.8
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 1.9e-296 1023.8 1960 35.9
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 3.9e-294 1016.1 1707 39.1
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 9.6e-293 1011.5 1557 39.4
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 1.2e-290 1004.6 1709 37.2
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 2.6e-290 1003.4 1779 38.3
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 6.7e-286 988.8 1672 37.4
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 1.1e-285 988.0 1765 37.4
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 8.2e-284 981.9 1727 36.6
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 4.1e-283 979.5 1989 35.5
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 4.1e-283 979.5 1994 35.2
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 3.2e-280 969.9 1671 36.9
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 5.5e-280 969.1 1674 38.0
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 9.4e-280 968.4 1725 36.2
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 2.7e-279 966.8 1735 37.0
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 6.1e-279 965.7 1802 37.0
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 6.1e-279 965.7 1802 37.0
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 1.4e-278 964.5 1883 36.7
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 3.0e-278 963.4 1673 36.8
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 9.7e-277 958.4 2117 33.4
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 3.3e-269 933.3 1813 34.8
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 7.4e-269 932.2 1773 35.0
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 2.8e-268 930.2 1421 39.8
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.4e-267 927.9 1559 38.5
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 5.3e-267 926.0 2086 33.1
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 7.0e-267 925.6 1758 35.7
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 5.0e-265 919.5 1707 35.2
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 5.2e-262 909.4 1869 34.5
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 2.0e-261 907.5 2021 33.3
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 6.3e-260 902.5 1655 36.2
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 1.7e-252 877.9 1671 35.0
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 3.7e-252 876.7 1285 41.6
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 4.2e-248 863.2 1220 42.8
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 5.6e-240 836.3 2034 31.7
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 5.6e-216 756.5 1323 42.3
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 6.7e-177 626.7 808 45.7
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 3.1e-166 591.3 1139 34.9
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 1.2e-162 579.3 995 37.0
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 1.2e-157 562.8 1220 33.4
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.7e-151 542.3 782 41.0
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 7.0e-142 510.4 789 39.5
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 3.5e-141 508.1 793 39.6
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 9.8e-136 490.0 1748 27.1
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.2e-128 466.5 678 41.9
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 1.0e-124 453.4 834 36.0
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.8e-98 365.5 574 39.4
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 5.8e-88 331.3 569 38.0
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 8.4e-87 327.4 568 35.7
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 9.3e-78 297.4 1039 26.1
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 8.4e-71 274.2 571 33.6
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 2.1e-66 259.6 889 27.9
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.1e-65 257.3 554 31.8
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 6.9e-65 254.6 297 46.8
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 1.0e-63 250.8 472 34.3
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 4.5e-56 225.3 662 32.6
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 1.3e-34 154.1 374 33.7
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 1.6e-32 147.1 420 30.5
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 3.5e-32 146.0 978 21.0
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 1.1e-30 141.0 988 22.8
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 2.8e-26 126.3 405 29.6
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 1.1e-22 114.4 230 32.6
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 1.2e-21 110.9 400 27.5
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 2.7e-21 109.8 443 24.4
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 1.0e-15 91.3 138 37.7
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 1.5e-14 87.4 170 33.5
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 1.9e-14 87.0 226 34.5
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.9e-14 87.0 118 43.2
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 2.3e-12 80.1 79 45.6
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 2.6e-11 76.6 103 42.7
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 7.5e-11 75.1 148 33.1
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 1.3e-10 74.3 166 28.3
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 1.7e-10 73.9 164 33.5
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 4.9e-10 72.4 165 28.5
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 6.3e-10 72.0 223 26.5
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.8e-09 70.5 68 48.5
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 4.1e-09 69.3 106 39.6
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 4.3e-06 59.3 247 25.9


User provided reference genes

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