Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 0.0e+00 1189.9 638 100.0
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 2.4e-196 689.5 695 56.0
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 1.4e-151 540.8 595 53.4
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.6e-150 537.3 649 51.3
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 2.9e-149 533.1 615 52.8
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 1.6e-147 527.3 598 53.7
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 6.1e-147 525.4 639 51.3
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 4.4e-145 519.2 644 51.1
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 7.5e-145 518.5 584 52.6
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 7.5e-145 518.5 645 47.6
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 6.3e-144 515.4 571 53.4
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 2.4e-143 513.5 653 50.8
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 4.1e-143 512.7 672 47.9
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 2.7e-142 510.0 671 49.6
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 5.9e-142 508.8 682 47.2
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 5.9e-142 508.8 581 52.3
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 1.7e-141 507.3 677 47.9
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 1.7e-141 507.3 578 51.6
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 2.9e-141 506.5 645 53.3
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 6.5e-141 505.4 582 51.2
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 6.5e-141 505.4 676 48.1
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.1e-140 504.6 586 52.2
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 1.5e-140 504.2 682 47.8
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 2.5e-140 503.4 651 48.7
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 5.5e-140 502.3 659 50.8
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.2e-139 501.1 672 49.0
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 2.7e-139 500.0 654 48.3
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 1.4e-138 497.7 677 48.7
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 8.8e-138 495.0 645 47.6
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 1.2e-137 494.6 651 50.1
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 7.5e-137 491.9 576 52.6
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 9.8e-137 491.5 683 46.3
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 2.8e-136 490.0 655 47.3
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 3.7e-136 489.6 670 46.1
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 4.8e-136 489.2 671 48.3
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 6.3e-136 488.8 588 51.2
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 1.4e-135 487.6 658 48.0
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 1.8e-135 487.3 633 47.6
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 1.8e-135 487.3 647 49.1
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 1.8e-135 487.3 592 50.0
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 3.1e-135 486.5 674 45.8
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 5.4e-135 485.7 674 47.3
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 5.4e-135 485.7 591 49.9
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 5.4e-135 485.7 667 46.6
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 7.0e-135 485.3 681 46.4
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 9.1e-135 485.0 680 47.1
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 2.7e-134 483.4 654 47.1
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 3.5e-134 483.0 645 48.2
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 4.5e-134 482.6 675 46.1
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 7.7e-134 481.9 573 50.8
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 1.0e-133 481.5 663 45.9
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 1.3e-133 481.1 670 45.7
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 1.7e-133 480.7 656 47.9
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 1.7e-133 480.7 672 46.9
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 2.3e-133 480.3 655 47.2
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 3.8e-133 479.6 679 47.4
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.8e-133 479.6 584 50.0
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 8.6e-133 478.4 678 45.9
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 1.5e-132 477.6 589 51.3
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 1.5e-132 477.6 630 49.4
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 2.5e-132 476.9 660 47.4
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 4.2e-132 476.1 650 47.1
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 9.5e-132 474.9 658 48.8
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 9.5e-132 474.9 593 49.1
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 1.2e-131 474.6 642 48.3
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 1.2e-131 474.6 586 50.7
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 1.6e-131 474.2 579 50.6
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 8.0e-131 471.9 675 48.6
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 1.4e-130 471.1 661 47.5
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 3.0e-130 469.9 590 48.5
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 4.0e-130 469.5 590 48.3
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 5.2e-130 469.2 645 47.0
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 1.2e-129 468.0 635 46.0
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 1.2e-129 468.0 585 49.6
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 2.6e-129 466.8 697 45.6
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 7.5e-129 465.3 625 47.5
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 2.2e-128 463.8 616 48.5
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 8.3e-128 461.8 614 49.2
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 8.3e-128 461.8 583 49.6
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 3.1e-127 459.9 674 45.0
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 4.1e-127 459.5 663 48.1
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 5.4e-127 459.1 583 48.9
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 9.2e-127 458.4 590 48.8
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 9.2e-127 458.4 631 46.4
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 9.2e-127 458.4 657 47.8
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 1.6e-126 457.6 592 49.3
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 2.3e-125 453.8 661 46.6
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 6.6e-125 452.2 651 47.2
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 8.6e-125 451.8 667 44.8
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 8.6e-125 451.8 664 45.3
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 3.3e-124 449.9 635 47.9
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 9.5e-124 448.4 672 47.2
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 1.8e-122 444.1 553 48.6
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 4.0e-122 443.0 691 45.2
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 4.0e-122 443.0 569 49.0
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 2.6e-121 440.3 582 49.3
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 2.6e-121 440.3 587 47.5
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 4.4e-121 439.5 639 46.9
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 4.4e-121 439.5 579 47.0
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 6.0e-118 429.1 583 47.3
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 4.7e-115 419.5 566 47.9
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 5.2e-114 416.0 637 44.0
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 4.4e-113 412.9 560 47.9
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 5.8e-113 412.5 570 46.0
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 5.4e-111 406.0 673 44.3
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 1.3e-109 401.4 892 37.7
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 1.1e-108 398.3 847 37.5
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 2.1e-107 394.0 587 44.6
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 3.6e-107 393.3 527 47.2
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 3.6e-99 366.7 484 49.4
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 7.1e-95 352.4 574 42.9
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 2.2e-88 330.9 376 52.9
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 2.2e-88 330.9 551 43.2
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 1.4e-87 328.2 415 50.1
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 3.0e-85 320.5 410 50.7
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 7.6e-81 305.8 369 53.7
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 1.7e-80 304.7 399 50.4
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 4.8e-75 286.6 346 52.3
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 1.3e-69 268.5 337 50.4
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 2.4e-66 257.7 344 48.3
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 2.0e-57 228.0 390 42.3
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 9.7e-52 209.1 274 45.6
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.4e-50 205.3 317 45.4
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 3.6e-46 190.7 232 46.6
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 7.9e-46 189.5 281 48.4
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-41 175.6 290 40.7
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 2.5e-39 167.9 275 41.5
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 6.1e-38 163.3 140 62.1
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.4e-34 152.1 125 63.2
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 2.2e-32 144.8 178 41.6
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 2.0e-28 131.7 228 39.0
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 1.4e-26 125.6 810 25.9
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 4.1e-26 124.0 293 34.1
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 2.7e-25 121.3 95 67.4
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 2.1e-22 111.7 135 54.1
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 1.0e-16 92.8 69 63.8
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 1.2e-06 59.3 53 45.3


User provided reference genes

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