Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 1.9e-206 722.2 356 100.0
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 1.7e-130 469.9 333 68.2
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 9.7e-118 427.6 341 63.9
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 3.0e-111 406.0 329 61.4
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 5.7e-110 401.7 329 60.2
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 1.3e-109 400.6 331 59.8
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 4.8e-109 398.7 326 60.4
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 6.3e-109 398.3 329 61.7
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 6.3e-109 398.3 326 60.4
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 1.4e-108 397.1 339 59.3
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 1.8e-108 396.7 340 58.8
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 9.1e-108 394.4 326 60.7
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 9.1e-108 394.4 326 61.3
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 1.2e-107 394.0 324 61.1
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 1.5e-107 393.7 329 61.1
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.5e-107 393.7 329 61.1
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 1.5e-107 393.7 325 59.1
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 1.5e-107 393.7 332 59.9
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 2.0e-107 393.3 324 61.1
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 2.0e-107 393.3 328 60.7
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 2.0e-107 393.3 337 59.9
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 2.0e-107 393.3 338 60.1
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 2.6e-107 392.9 322 61.2
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 3.4e-107 392.5 331 59.8
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 3.4e-107 392.5 329 61.1
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 4.5e-107 392.1 326 60.7
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 4.5e-107 392.1 326 60.4
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 5.9e-107 391.7 329 60.8
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 5.9e-107 391.7 325 60.6
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 5.9e-107 391.7 335 60.6
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 7.7e-107 391.3 327 59.0
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 7.7e-107 391.3 330 60.0
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 7.7e-107 391.3 322 60.2
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 1.0e-106 391.0 330 60.0
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 1.3e-106 390.6 326 60.1
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 1.3e-106 390.6 331 59.5
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 1.7e-106 390.2 325 59.7
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.7e-106 390.2 329 60.8
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 1.7e-106 390.2 328 60.1
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 2.2e-106 389.8 327 59.9
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 2.2e-106 389.8 328 60.7
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 2.9e-106 389.4 324 60.5
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 2.9e-106 389.4 324 60.2
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 3.8e-106 389.0 353 56.7
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 5.0e-106 388.7 326 59.2
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 6.5e-106 388.3 345 56.8
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 8.5e-106 387.9 325 58.5
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 2.5e-105 386.3 339 58.1
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 2.5e-105 386.3 340 57.9
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 5.5e-105 385.2 338 58.3
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 7.2e-105 384.8 325 60.3
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 7.2e-105 384.8 325 60.3
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 1.2e-104 384.0 326 58.6
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 1.6e-104 383.6 326 59.8
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 1.6e-104 383.6 334 58.4
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 2.1e-104 383.3 333 58.0
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 2.7e-104 382.9 327 58.7
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 4.7e-104 382.1 334 58.4
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 4.7e-104 382.1 322 59.3
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 6.1e-104 381.7 328 59.1
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 6.1e-104 381.7 327 59.0
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 6.1e-104 381.7 330 57.9
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.4e-103 380.6 324 59.3
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 1.8e-103 380.2 325 59.7
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 2.3e-103 379.8 325 58.2
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 2.3e-103 379.8 325 59.4
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 3.0e-103 379.4 329 57.8
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 3.9e-103 379.0 326 58.3
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 3.9e-103 379.0 326 58.3
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 3.9e-103 379.0 325 57.8
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 5.1e-103 378.6 327 58.7
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 8.8e-103 377.9 324 59.0
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 1.1e-102 377.5 325 59.1
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 1.5e-102 377.1 326 58.0
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 2.0e-102 376.7 325 59.1
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 2.6e-102 376.3 326 58.6
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 2.6e-102 376.3 326 58.0
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 2.6e-102 376.3 325 59.1
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 3.3e-102 375.9 325 57.5
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 3.3e-102 375.9 324 59.0
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 4.4e-102 375.6 324 58.3
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 4.4e-102 375.6 321 58.6
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 7.4e-102 374.8 324 59.6
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 1.3e-101 374.0 329 58.1
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 2.8e-101 372.9 325 57.5
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 2.8e-101 372.9 329 57.8
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 2.8e-101 372.9 319 57.7
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 2.8e-101 372.9 326 57.4
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 8.2e-101 371.3 334 57.5
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 1.4e-100 370.5 331 57.1
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 1.8e-100 370.2 291 62.5
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 3.1e-100 369.4 326 58.6
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 3.5e-99 365.9 325 56.9
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 3.5e-99 365.9 350 54.6
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 7.2e-97 358.2 357 53.5
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 8.0e-96 354.8 295 61.0
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 2.3e-95 353.2 309 59.5
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 4.0e-95 352.4 328 56.1
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 3.7e-93 345.9 297 60.3
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 8.2e-93 344.7 294 60.2
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 1.2e-91 340.9 294 59.2
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 4.2e-89 332.4 298 54.7
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 9.4e-89 331.3 319 54.9
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 8.0e-88 328.2 264 61.7
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 8.0e-88 328.2 260 62.3
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 2.6e-86 323.2 260 62.3
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 4.4e-86 322.4 346 51.4
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 1.1e-84 317.8 259 61.0
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 9.4e-81 304.7 281 55.9
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 1.8e-79 300.4 223 67.7
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 2.3e-79 300.1 260 59.2
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 1.2e-78 297.7 331 50.5
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 4.4e-78 295.8 214 66.8
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 7.3e-73 278.5 213 60.1
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 1.4e-71 274.2 227 60.8
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 5.0e-58 229.2 324 40.1
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 8.6e-58 228.4 167 66.5
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.1e-55 221.5 179 62.0
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 5.1e-50 202.6 409 32.3
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 4.4e-46 189.5 208 50.0
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 1.3e-42 177.9 207 49.8
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 8.1e-40 168.7 142 59.9
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 2.1e-35 154.1 311 34.7
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 1.7e-34 151.0 209 43.1
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 3.6e-32 143.3 106 63.2
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 3.6e-24 116.7 311 32.5
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 9.0e-23 112.1 228 38.2
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 9.9e-22 108.6 116 52.6
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 1.4e-20 104.8 241 31.1
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 6.2e-16 89.4 57 70.2
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 2.4e-07 60.8 45 64.4


User provided reference genes

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