Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 7.1e-113 410.6 207 100.0
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 3.0e-71 272.3 168 78.0
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 1.1e-70 270.4 169 75.7
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.6e-70 269.2 169 76.3
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.6e-70 269.2 169 76.3
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 5.7e-70 268.1 168 75.6
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.3e-69 266.9 168 76.2
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 1.7e-69 266.5 167 77.2
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 1.7e-69 266.5 169 76.3
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 2.2e-69 266.2 168 75.6
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 2.8e-69 265.8 168 75.0
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 4.8e-69 265.0 168 75.6
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 4.8e-69 265.0 168 75.0
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 1.1e-68 263.8 167 75.4
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 1.4e-68 263.5 169 74.6
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 1.4e-68 263.5 168 75.0
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 1.8e-68 263.1 169 75.7
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 1.8e-68 263.1 168 73.8
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 2.4e-68 262.7 167 74.9
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 5.3e-68 261.5 167 74.3
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 5.3e-68 261.5 167 75.4
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 7.0e-68 261.2 168 72.6
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 7.0e-68 261.2 167 74.3
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 7.0e-68 261.2 167 74.3
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 1.2e-67 260.4 169 74.6
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 1.6e-67 260.0 168 73.2
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 2.6e-67 259.2 167 74.9
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 2.6e-67 259.2 167 73.1
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 4.5e-67 258.5 167 71.9
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 4.5e-67 258.5 167 73.7
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 4.5e-67 258.5 168 73.2
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 4.5e-67 258.5 168 74.4
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 5.9e-67 258.1 168 74.4
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 7.7e-67 257.7 168 73.8
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 7.7e-67 257.7 167 72.5
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 7.7e-67 257.7 167 72.5
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 1.0e-66 257.3 167 72.5
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 1.0e-66 257.3 166 72.3
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 1.7e-66 256.5 168 73.2
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 1.7e-66 256.5 167 71.9
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 1.7e-66 256.5 167 72.5
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 1.7e-66 256.5 167 74.3
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 2.2e-66 256.1 168 72.0
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 8.5e-66 254.2 168 70.2
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 8.5e-66 254.2 166 72.3
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 8.5e-66 254.2 166 72.3
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 8.5e-66 254.2 166 72.3
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 8.5e-66 254.2 166 72.3
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 8.5e-66 254.2 168 73.2
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 1.5e-65 253.4 166 74.1
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-65 253.4 166 72.3
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 1.5e-65 253.4 168 70.8
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 2.5e-65 252.7 166 72.9
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 2.5e-65 252.7 167 72.5
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 3.2e-65 252.3 168 70.2
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 4.2e-65 251.9 168 70.2
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 5.5e-65 251.5 167 70.1
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 5.5e-65 251.5 168 70.8
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 1.6e-64 250.0 180 68.3
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.6e-64 250.0 167 74.9
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 2.1e-64 249.6 166 71.7
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 2.1e-64 249.6 167 70.1
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 2.1e-64 249.6 166 70.5
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 2.7e-64 249.2 157 76.4
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 4.7e-64 248.4 166 70.5
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 4.7e-64 248.4 166 72.9
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 4.7e-64 248.4 167 69.5
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 6.1e-64 248.1 166 71.1
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 6.1e-64 248.1 149 79.9
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 8.0e-64 247.7 167 70.7
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 8.0e-64 247.7 167 71.3
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 8.0e-64 247.7 167 70.7
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 2.3e-63 246.1 157 75.8
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.0e-63 245.4 215 60.0
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 5.2e-63 245.0 167 69.5
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 6.7e-63 244.6 167 69.5
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 6.7e-63 244.6 167 70.1
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 8.8e-63 244.2 167 68.3
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 8.8e-63 244.2 167 70.1
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 8.8e-63 244.2 184 65.2
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-62 243.4 183 65.6
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 1.5e-62 243.4 168 67.3
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 1.5e-62 243.4 168 67.9
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.0e-62 243.0 167 69.5
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.0e-62 243.0 167 68.9
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 2.0e-62 243.0 150 78.0
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 2.6e-62 242.7 149 76.5
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 3.3e-62 242.3 168 71.4
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.4e-62 241.9 167 69.5
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.7e-62 241.5 183 65.0
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.7e-62 241.5 183 65.0
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 5.7e-62 241.5 205 59.5
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 7.5e-62 241.1 167 68.9
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.2e-61 239.6 147 78.2
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 2.2e-61 239.6 168 66.1
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 2.8e-61 239.2 190 62.6
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 4.8e-61 238.4 143 78.3
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 4.8e-61 238.4 149 75.8
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 6.3e-61 238.0 149 75.8
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 2.4e-60 236.1 166 68.7
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 1.2e-59 233.8 167 68.3
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 1.2e-59 233.8 167 68.3
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 1.2e-59 233.8 149 71.1
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 1.2e-59 233.8 167 67.1
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 2.0e-59 233.0 194 60.8
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 2.7e-59 232.6 143 76.2
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 1.0e-58 230.7 150 73.3
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 1.3e-58 230.3 170 64.1
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 1.7e-58 229.9 155 69.0
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 8.5e-58 227.6 148 72.3
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 1.5e-57 226.9 240 52.1
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 1.5e-57 226.9 168 65.5
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.2e-56 223.8 152 70.4
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 2.1e-56 223.0 162 68.5
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 2.7e-56 222.6 189 60.3
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 6.8e-55 218.0 149 69.8
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 1.2e-54 217.2 164 63.4
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 1.8e-52 209.9 137 73.7
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 1.8e-52 209.9 177 61.0
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 2.4e-52 209.5 149 67.8
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 9.1e-52 207.6 126 74.6
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 7.7e-51 204.5 139 71.2
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 1.0e-50 204.1 124 74.2
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 1.3e-50 203.8 152 66.4
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 8.6e-50 201.1 168 63.1
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 1.1e-49 200.7 125 74.4
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 1.2e-48 197.2 156 63.5
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 1.0e-47 194.1 166 61.4
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 1.8e-47 193.4 168 60.1
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 5.2e-47 191.8 122 77.0
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 2.8e-45 186.0 121 73.6
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 3.7e-45 185.7 122 73.0
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 3.7e-45 185.7 121 72.7
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 3.7e-45 185.7 121 72.7
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 6.3e-45 184.9 132 68.2
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 8.3e-45 184.5 121 71.9
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 2.4e-44 183.0 166 56.6
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 3.1e-44 182.6 157 61.8
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 3.1e-44 182.6 123 73.2
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 2.0e-43 179.9 123 69.9
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 4.5e-43 178.7 147 65.3
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 8.6e-42 174.5 141 63.1
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 4.1e-36 155.6 103 75.7
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 4.1e-36 155.6 106 72.6
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 7.8e-35 151.4 89 78.7
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 1.3e-34 150.6 90 73.3
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.1e-31 141.0 134 59.0
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.5e-30 134.8 94 72.3
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 3.7e-29 132.5 134 53.0
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 1.6e-27 127.1 83 77.1
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.4e-22 109.0 73 75.3
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.2e-21 106.7 82 63.4
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 6.4e-21 105.1 103 53.4
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 3.2e-20 102.8 130 43.8
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 9.2e-20 101.3 78 61.5
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.6e-19 100.5 74 64.9
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 7.8e-19 98.2 151 39.7
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 5.1e-18 95.5 77 63.6
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 6.8e-15 85.1 64 67.2
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.4e-14 82.4 64 60.9
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 2.2e-13 80.1 161 33.5
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 3.5e-11 72.8 49 73.5
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 3.5e-11 72.8 49 73.5
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 8.7e-10 68.2 46 67.4
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 1.5e-09 67.4 111 44.1


User provided reference genes

Program Settings