Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 3694.4 1900 100.0
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 2506.5 1914 65.9
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 2358.2 1908 63.3
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 0.0e+00 2120.1 1930 57.4
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 1799.3 1911 50.8
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 1793.5 1907 50.9
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 1787.3 1907 50.0
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 1765.0 1912 49.1
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 1765.0 1906 49.2
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 1762.7 1902 48.8
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 1753.8 1914 49.0
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 1745.3 1913 48.5
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 1744.2 1903 48.7
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1743.8 1913 49.0
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 1735.7 1905 49.1
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1734.9 1913 48.2
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 1732.6 1909 48.3
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1729.5 1910 48.1
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 1727.6 1910 48.9
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 1727.6 1910 49.0
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 1727.2 1912 49.0
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 1725.7 1903 48.3
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 1719.5 1937 47.9
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 1718.7 1904 48.6
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 1718.0 1928 48.4
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 1716.8 1902 48.8
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 1715.3 1909 48.3
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 1714.9 1907 48.6
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 1712.2 1910 48.5
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 1711.0 1912 48.3
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 1709.9 1903 48.2
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 1709.5 1910 48.6
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 1703.7 1907 48.5
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 1703.7 1916 48.0
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 1703.3 1892 47.9
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1699.9 1917 48.6
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1697.9 1918 47.6
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 1697.2 1907 48.2
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 1696.8 1905 48.2
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1693.7 1917 48.1
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 1691.8 1931 48.3
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 1690.2 1911 48.2
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 1688.3 1901 48.0
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 1688.3 1911 48.1
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 1683.3 1902 47.5
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 1682.2 1896 47.4
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 1680.6 1981 46.1
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1677.1 1916 47.0
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 1671.8 1914 47.5
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 1671.4 1924 48.0
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 1662.5 1899 47.2
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 1652.9 1908 46.5
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 1648.3 1936 47.2
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 1643.6 1971 46.1
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 1640.2 1901 46.7
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 0.0e+00 1637.5 1953 47.6
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 1635.2 1903 46.8
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 1628.2 2026 45.0
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 1625.9 1917 47.0
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 1623.6 1907 46.1
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 1620.1 1976 45.5
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 1612.4 1907 45.8
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 1611.7 1907 45.8
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1609.7 1920 46.7
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 1604.7 1908 45.8
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 1603.6 1910 46.8
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 1602.8 1905 45.7
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1600.5 1582 52.5
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 1565.4 1939 44.8
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 1559.7 1906 45.0
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 1556.6 1904 44.6
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 1555.0 1906 45.0
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 1550.4 1907 45.0
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 1548.5 1733 48.1
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 1546.2 2030 43.1
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 1543.1 1910 45.3
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 1538.5 1902 45.1
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 1521.9 1907 43.6
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 1510.0 1949 44.2
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 1498.0 2340 39.1
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 1478.8 1612 49.6
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 1460.7 1655 47.1
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 1397.1 1499 49.9
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 0.0e+00 1382.5 1532 48.2
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 1328.9 1478 49.3
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 1294.6 1436 48.4
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 0.0e+00 1287.7 1464 48.0
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 0.0e+00 1243.8 1191 53.2
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1104.0 1367 45.8
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1091.3 1213 47.7
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 8.9e-295 1018.1 1264 45.1
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 6.0e-267 925.6 1635 36.7
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 2.5e-257 893.6 1043 47.3
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 1.0e-253 881.7 1030 47.0
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 7.9e-251 872.1 842 52.0
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 3.1e-247 860.1 1139 43.5
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 6.7e-242 842.4 733 59.3
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 9.7e-225 785.4 791 51.7
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 5.7e-217 759.6 1638 33.3
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 1.4e-215 755.0 979 44.6
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 4.7e-211 740.0 1254 37.6
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 1.2e-198 698.7 1638 31.4
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 5.0e-197 693.3 751 47.5
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 7.3e-196 689.5 790 46.2
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 3.1e-162 577.8 1049 35.9
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 3.1e-154 551.2 704 43.6
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 6.9e-138 496.9 713 41.2
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 4.2e-127 461.1 520 47.5
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 1.8e-109 402.5 626 39.3
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 3.1e-106 391.7 514 45.1
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 3.8e-104 384.8 483 46.2
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 2.2e-99 369.0 398 48.5
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 1.2e-76 293.5 296 51.7
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 9.5e-71 273.9 329 46.2
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 1.5e-68 266.5 228 57.9
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 2.2e-67 262.7 210 60.5
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 4.6e-65 255.0 182 67.0
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 3.3e-63 248.8 323 44.9
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.4e-61 243.4 357 40.9
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 2.2e-59 236.1 322 44.1
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 6.4e-59 234.6 219 54.3
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 6.2e-54 218.0 298 42.3
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 1.3e-48 200.3 1791 22.4
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 4.3e-47 195.3 176 54.5
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 3.6e-46 192.2 421 32.8
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 2.9e-43 182.6 210 48.6
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 3.8e-43 182.2 431 32.5
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 1.2e-41 177.2 765 23.7
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 1.4e-37 163.7 227 43.6
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 5.8e-36 158.3 322 33.2
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 5.5e-34 151.8 247 39.7
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 5.5e-34 151.8 247 39.7
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 2.1e-33 149.8 312 33.7
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 4.3e-31 142.1 96 69.8
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 1.3e-30 140.6 301 33.9
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 2.1e-30 139.8 214 38.8
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 9.0e-29 134.4 151 51.0
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 8.4e-27 127.9 981 23.8
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 1.9e-26 126.7 406 26.8
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.5e-26 126.3 100 56.0
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 1.2e-25 124.0 149 45.0
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 3.5e-25 122.5 272 30.9
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 5.1e-24 118.6 97 59.8
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 5.1e-24 118.6 331 30.8
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 5.7e-23 115.2 162 38.3
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 4.1e-21 109.0 126 53.2
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 6.9e-21 108.2 67 73.1
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 1.5e-20 107.1 156 39.7
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 5.5e-18 98.6 75 62.7
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.7e-17 96.3 74 62.2
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 8.8e-16 91.3 150 37.3
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.3e-14 87.4 164 36.0
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 2.4e-13 83.2 111 45.9
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 6.9e-13 81.6 116 38.8
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 9.1e-13 81.3 100 45.0
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 2.2e-11 76.6 63 50.8
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 2.9e-11 76.3 141 33.3
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 8.5e-11 74.7 59 59.3
Cpa.g.sc75.37 Carica papaya HOM05D003776 ORTHO05D004459 3.6e-09 69.3 81 45.7
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 5.1e-08 65.5 57 54.4
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 2.6e-07 63.2 47 63.8
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.6e-07 63.2 43 65.1
SEGI_02226 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 9.7e-07 61.2 108 35.2


User provided reference genes

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