Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 1.5e-256 889.0 462 100.0
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 1.2e-152 543.9 482 61.4
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.1e-150 537.3 333 79.3
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 2.8e-149 532.7 461 60.5
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 1.8e-148 530.0 466 60.5
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 5.2e-148 528.5 461 61.4
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 6.8e-148 528.1 462 61.7
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 1.2e-147 527.3 466 61.4
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 1.5e-147 526.9 469 60.3
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 4.4e-147 525.4 461 61.4
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 1.3e-146 523.9 471 60.1
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.3e-146 523.9 472 59.1
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.3e-146 523.9 462 61.0
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 1.3e-146 523.9 465 59.1
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 1.3e-146 523.9 460 60.2
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.2e-146 523.1 471 59.0
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 2.9e-146 522.7 472 60.0
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 3.7e-146 522.3 468 60.0
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 6.4e-146 521.5 471 59.4
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 8.3e-146 521.2 461 59.0
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 8.3e-146 521.2 471 59.4
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 1.1e-145 520.8 475 58.7
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 1.9e-145 520.0 332 75.0
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 2.4e-145 519.6 460 60.4
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 2.4e-145 519.6 470 58.9
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.2e-145 519.2 460 60.7
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 5.4e-145 518.5 466 59.2
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 5.4e-145 518.5 465 58.9
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.1e-144 516.5 452 61.3
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 3.5e-144 515.8 459 60.8
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 3.5e-144 515.8 457 60.0
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 4.6e-144 515.4 468 58.5
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 4.6e-144 515.4 466 59.2
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 6.0e-144 515.0 454 58.8
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 7.8e-144 514.6 454 61.0
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 1.0e-143 514.2 483 56.9
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 1.0e-143 514.2 479 59.1
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 1.3e-143 513.8 463 59.4
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 2.3e-143 513.1 453 58.9
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.0e-143 512.7 454 61.0
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 3.9e-143 512.3 455 59.6
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 3.9e-143 512.3 454 59.0
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 3.9e-143 512.3 461 59.4
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 6.6e-143 511.5 457 58.9
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 6.6e-143 511.5 512 55.5
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 6.6e-143 511.5 473 59.0
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 8.6e-143 511.1 461 60.5
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.1e-142 510.8 476 57.6
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 1.1e-142 510.8 488 57.2
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 1.5e-142 510.4 464 60.1
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 1.9e-142 510.0 454 59.5
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 2.5e-142 509.6 457 58.4
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 2.5e-142 509.6 457 58.4
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 2.5e-142 509.6 475 58.5
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 3.3e-142 509.2 460 59.1
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 4.3e-142 508.8 455 59.8
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 4.3e-142 508.8 453 59.2
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 4.3e-142 508.8 456 59.6
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 7.3e-142 508.1 484 56.2
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 1.6e-141 506.9 419 62.5
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 2.8e-141 506.1 463 59.8
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 2.8e-141 506.1 479 59.1
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 3.6e-141 505.8 455 60.0
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 3.6e-141 505.8 460 59.1
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 6.2e-141 505.0 387 65.1
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 6.2e-141 505.0 454 58.1
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 8.1e-141 504.6 457 59.1
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 1.1e-140 504.2 463 58.7
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 1.4e-140 503.8 455 58.5
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 1.4e-140 503.8 461 59.7
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 1.4e-140 503.8 459 58.2
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 1.8e-140 503.4 458 58.7
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 1.8e-140 503.4 458 58.7
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 3.1e-140 502.7 455 58.0
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 4.0e-140 502.3 470 58.1
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 4.0e-140 502.3 460 58.5
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 5.2e-140 501.9 464 58.0
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 8.9e-140 501.1 459 58.2
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 1.2e-139 500.7 509 55.8
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 1.5e-139 500.4 460 58.9
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 2.6e-139 499.6 459 58.0
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 7.6e-139 498.0 463 56.8
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 7.6e-139 498.0 356 69.4
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 9.9e-139 497.7 462 58.7
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 1.3e-138 497.3 461 58.1
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 2.9e-138 496.1 501 55.7
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 4.9e-138 495.4 335 71.6
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 6.4e-138 495.0 464 56.9
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 8.4e-138 494.6 456 57.5
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 1.4e-137 493.8 358 67.0
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 1.9e-137 493.4 455 56.7
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 3.2e-137 492.7 479 57.6
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 4.1e-137 492.3 453 58.1
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 5.4e-137 491.9 453 57.0
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 1.6e-136 490.3 454 56.8
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 1.6e-136 490.3 458 58.1
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.6e-136 490.3 496 55.8
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 2.7e-136 489.6 464 58.0
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 2.7e-136 489.6 475 58.1
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 3.5e-136 489.2 400 61.5
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 3.5e-136 489.2 366 66.7
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.3e-135 486.5 471 56.3
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 3.9e-135 485.7 509 55.8
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 4.3e-134 482.3 449 59.2
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 5.6e-134 481.9 417 59.5
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 9.6e-134 481.1 456 57.7
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 9.6e-134 481.1 453 56.5
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 1.2e-133 480.7 468 56.0
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.6e-133 480.3 457 58.6
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 2.8e-133 479.6 450 56.2
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.8e-132 476.9 470 56.2
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 8.9e-132 474.6 463 55.9
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 2.0e-131 473.4 442 57.0
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 5.8e-131 471.9 460 56.1
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 5.8e-131 471.9 441 58.0
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 7.6e-131 471.5 461 56.2
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 1.7e-130 470.3 274 80.7
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 1.9e-129 466.8 463 55.7
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 2.4e-129 466.5 274 79.6
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 2.3e-127 459.9 471 54.4
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 5.1e-127 458.8 424 59.2
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 1.1e-126 457.6 410 58.0
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 2.1e-125 453.4 452 55.1
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 2.8e-125 453.0 460 54.6
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 3.1e-124 449.5 427 57.1
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 6.0e-120 435.3 457 53.8
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 6.0e-120 435.3 463 53.8
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 6.7e-119 431.8 496 50.2
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 1.5e-118 430.6 417 55.9
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 1.9e-118 430.3 498 50.6
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.0e-116 422.5 274 73.7
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 7.1e-113 411.8 399 57.6
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 2.5e-110 403.3 335 60.9
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.4e-108 397.5 421 52.7
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 3.8e-106 389.4 339 59.3
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 3.0e-103 379.8 352 58.0
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 8.7e-103 378.3 382 54.2
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.5e-99 367.5 358 53.4
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 8.5e-98 361.7 381 53.5
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.4e-97 360.9 552 44.7
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 9.3e-97 358.2 436 47.7
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 5.3e-92 342.4 464 46.6
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.6e-91 340.1 429 46.9
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 1.5e-83 314.3 269 60.6
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.8e-82 309.7 290 55.5
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 1.5e-70 271.2 164 78.7
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 8.0e-56 222.2 388 37.9
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 3.7e-45 186.8 120 79.2
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 3.0e-42 177.2 470 33.0
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 3.7e-29 133.7 81 76.5
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 4.1e-28 130.2 233 40.3
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.5e-25 121.7 146 49.3
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 5.2e-23 113.2 140 50.7
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 3.3e-17 94.0 117 48.7
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 8.1e-16 89.4 114 49.1
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 1.1e-07 62.4 215 25.6
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 4.0e-07 60.5 241 22.8
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.9e-07 59.7 198 30.8
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 2.0e-06 58.2 197 34.0


User provided reference genes

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