Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 9.8e-162 573.5 321 100.0
Pp3c13_15400 Physcomitrium patens HOM05D005908 ORTHO05D007235 3.9e-49 199.5 237 43.5
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 1.8e-46 190.7 236 43.2
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 8.9e-46 188.3 235 43.0
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 3.4e-45 186.4 235 42.6
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 1.7e-44 184.1 236 43.2
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 3.7e-44 183.0 236 41.9
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 4.9e-44 182.6 240 42.9
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 4.9e-44 182.6 248 42.7
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 1.9e-43 180.6 239 40.6
AagrBONN_evm.TU.Sc2ySwM_228.723 Anthoceros agrestis HOM05D005908 ORTHO05D007235 7.1e-43 178.7 237 41.4
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 7.1e-43 178.7 237 41.4
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 9.2e-43 178.3 235 44.3
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 1.6e-42 177.6 234 43.6
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 3.5e-42 176.4 233 44.6
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 1.0e-41 174.9 234 40.2
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 1.0e-41 174.9 238 41.2
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 3.0e-41 173.3 234 44.0
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 3.9e-41 172.9 239 40.6
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 3.9e-41 172.9 238 41.2
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 3.9e-41 172.9 234 43.6
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 5.1e-41 172.6 239 40.6
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 6.6e-41 172.2 240 42.5
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 8.6e-41 171.8 239 41.4
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 1.1e-40 171.4 241 39.4
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 1.1e-40 171.4 240 42.1
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 1.1e-40 171.4 236 41.9
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 1.5e-40 171.0 237 40.1
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 3.3e-40 169.9 233 43.8
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 3.3e-40 169.9 235 42.1
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 3.3e-40 169.9 236 41.1
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 3.3e-40 169.9 240 40.4
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 5.6e-40 169.1 232 41.8
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 5.6e-40 169.1 237 42.2
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 5.6e-40 169.1 237 42.2
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 5.6e-40 169.1 237 42.6
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 7.3e-40 168.7 235 40.4
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 9.5e-40 168.3 241 41.1
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 1.6e-39 167.5 238 42.0
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 1.6e-39 167.5 243 39.5
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 1.6e-39 167.5 236 42.4
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.1e-39 167.2 237 41.4
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.8e-39 166.8 237 41.8
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.6e-39 166.4 237 41.8
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 3.6e-39 166.4 234 41.5
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 3.6e-39 166.4 240 40.8
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 3.6e-39 166.4 235 40.9
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 3.6e-39 166.4 236 40.3
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 3.6e-39 166.4 240 40.0
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 6.2e-39 165.6 241 41.9
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 6.2e-39 165.6 236 40.7
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 6.2e-39 165.6 233 42.9
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 6.2e-39 165.6 233 42.9
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 8.1e-39 165.2 239 41.0
SMO364G0827 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 8.1e-39 165.2 229 42.4
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 1.1e-38 164.9 241 40.7
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 1.1e-38 164.9 234 40.6
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 1.1e-38 164.9 233 43.3
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 1.4e-38 164.5 239 39.3
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 1.8e-38 164.1 241 40.2
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.8e-38 164.1 237 41.4
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 1.8e-38 164.1 235 40.0
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 1.8e-38 164.1 239 39.3
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 4.0e-38 162.9 233 42.5
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 5.2e-38 162.5 228 40.4
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 5.2e-38 162.5 233 41.6
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 5.2e-38 162.5 253 38.7
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 5.2e-38 162.5 237 39.2
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 6.8e-38 162.2 237 40.5
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 8.9e-38 161.8 241 40.2
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 1.2e-37 161.4 235 40.9
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 1.2e-37 161.4 252 38.5
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 1.5e-37 161.0 236 40.7
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 4.4e-37 159.5 240 39.6
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 7.6e-37 158.7 233 41.6
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 7.6e-37 158.7 229 40.2
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 9.9e-37 158.3 240 38.3
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 1.7e-36 157.5 238 39.1
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 1.7e-36 157.5 233 39.9
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 2.2e-36 157.1 237 38.8
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 3.7e-36 156.4 233 40.8
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 4.9e-36 156.0 233 40.3
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 6.4e-36 155.6 233 40.3
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 8.3e-36 155.2 238 39.1
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 8.3e-36 155.2 237 38.4
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 8.3e-36 155.2 238 38.2
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 1.1e-35 154.8 233 40.3
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 1.1e-35 154.8 233 40.3
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 1.1e-35 154.8 233 40.3
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 1.1e-35 154.8 228 39.9
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 3.2e-35 153.3 238 39.5
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 5.4e-35 152.5 239 38.9
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 1.6e-34 151.0 296 33.8
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 2.1e-34 150.6 235 40.0
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 2.7e-34 150.2 236 37.7
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 8.6e-33 145.2 233 37.3
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 1.1e-32 144.8 251 36.3
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 3.3e-32 143.3 172 44.2
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 2.1e-31 140.6 237 37.1
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 3.6e-31 139.8 239 38.1
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 1.4e-30 137.9 235 35.7
SMO353G0077 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 1.4e-30 137.9 231 38.5
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 1.5e-29 134.4 174 43.7
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 4.9e-28 129.4 192 41.1
Cre12.g537850 Chlamydomonas reinhardtii HOM05D005908 ORTHO05D007235 1.6e-26 124.4 253 33.2
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 4.6e-26 122.9 174 42.0
CBR_g58789 Chara braunii HOM05D005908 ORTHO05D007235 3.0e-25 120.2 132 47.7
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 3.0e-25 120.2 234 34.6
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 3.9e-25 119.8 177 39.5
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 1.5e-24 117.9 229 32.8
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 8.1e-23 112.1 192 31.8
SEGI_01877 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 1.2e-21 108.2 128 48.4
MCO01G567 Micromonas commoda HOM05D005908 ORTHO05D007235 4.9e-20 102.8 236 31.4
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 4.2e-19 99.8 241 31.5
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 1.0e-17 95.1 216 31.0
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 6.9e-14 82.4 152 33.6
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.8e-12 76.6 153 32.7
CSS0007682 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 3.2e-11 73.6 70 60.0
Dinv28477 Davidia involucrata HOM05D005908 ORTHO05D007235 4.2e-11 73.2 68 60.3
Lsat_1_v5_gn_2_133160 Lactuca sativa HOM05D005908 ORTHO05D007235 1.8e-09 67.8 101 41.6
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.1e-08 65.1 88 36.4
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.1e-08 65.1 88 36.4
Actinidia34081 Actinidia chinensis HOM05D005908 ORTHO05D007235 1.4e-06 58.2 146 26.0
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.1e-06 57.0 105 33.3


User provided reference genes

Program Settings