Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0050s0063 Marchantia polymorpha HOM05D034728 ORTHO05D006583 5.5e-133 477.6 242 100.0
Mapoly0004s0119 Marchantia polymorpha HOM05D034728 ORTHO05D006583 6.4e-97 357.8 240 79.2
Mapoly0068s0008 Marchantia polymorpha HOM05D005234 ORTHO05D006583 7.4e-45 184.9 103 92.2
Mapoly0004s0106 Marchantia polymorpha HOM05D034728 ORTHO05D006583 2.7e-31 139.8 99 76.8
Pp3c3_27330 Physcomitrium patens HOM05D005234 ORTHO05D006583 2.3e-22 110.2 117 50.4
Pp3c19_10210 Physcomitrium patens HOM05D005234 ORTHO05D006583 6.8e-14 82.0 91 47.3
SEGI_20375 Sequoiadendron giganteum HOM05D005234 ORTHO05D006583 1.2e-13 81.3 91 47.3
SMO141G0013 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 1.5e-13 80.9 59 67.8
SMO180G0001 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 2.0e-13 80.5 121 41.3
SMO340G0223 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 2.0e-13 80.5 121 41.3
SMO367G0389 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 1.3e-12 77.8 93 41.9
SMO367G1161 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 1.3e-12 77.8 99 41.4
Cc02_g08680 Coffea canephora HOM05D005234 ORTHO05D006583 7.7e-10 68.6 93 38.7
Lsat_1_v5_gn_2_115220 Lactuca sativa HOM05D005234 ORTHO05D006583 8.6e-09 65.1 156 30.1
FvH4_7g20720 Fragaria vesca HOM05D005234 ORTHO05D006583 1.9e-08 63.9 119 33.6
FAN01G2148 Fragaria x ananassa HOM05D005234 ORTHO05D006583 1.9e-08 63.9 116 34.5
FAN01G2697 Fragaria x ananassa HOM05D005234 ORTHO05D006583 1.9e-08 63.9 116 34.5
Potri.008G047400 Populus trichocarpa HOM05D005234 ORTHO05D006583 1.9e-08 63.9 97 38.1
TWI63G0851 Tripterygium wilfordii HOM05D005234 ORTHO05D006583 1.9e-08 63.9 93 38.7
Actinidia38226 Actinidia chinensis HOM05D005234 ORTHO05D006583 3.3e-08 63.2 99 35.4
Nn2g10556 Nelumbo nucifera HOM05D005234 ORTHO05D006583 7.3e-08 62.0 105 32.4
BolC8t50657H Brassica oleracea HOM05D005234 ORTHO05D006583 1.2e-07 61.2 103 35.0
Atru.chr12.595 Acer truncatum HOM05D005234 ORTHO05D006583 1.6e-07 60.8 119 31.1
Medtr1g115980 Medicago truncatula HOM05D005234 ORTHO05D006583 2.1e-07 60.5 92 34.8
GSVIVG01032632001 Vitis vinifera HOM05D005234 ORTHO05D006583 2.1e-07 60.5 97 33.0
Thhalv10010346m.g Eutrema salsugineum HOM05D005234 ORTHO05D006583 2.8e-07 60.1 105 34.3
Phvul.007G007800 Phaseolus vulgaris HOM05D005234 ORTHO05D006583 2.8e-07 60.1 97 35.1
RcHm_v2.0_Chr1g0364981 Rosa chinensis HOM05D005234 ORTHO05D006583 2.8e-07 60.1 98 33.7
VMungo0720G1519 Vigna mungo HOM05D005234 ORTHO05D006583 2.8e-07 60.1 96 35.4
HanXRQChr14g0460751 Helianthus annuus HOM05D005234 ORTHO05D006583 4.7e-07 59.3 93 34.4
BcaB01g00128 Brassica carinata HOM05D005234 ORTHO05D006583 6.1e-07 58.9 105 32.4
Lalb_Chr06g0164091 Lupinus albus HOM05D005234 ORTHO05D006583 6.1e-07 58.9 92 35.9
PSO063G5764 Papaver somniferum HOM05D005234 ORTHO05D006583 6.1e-07 58.9 96 36.5
Hund06032 Selenicereus undatus HOM05D005234 ORTHO05D006583 8.0e-07 58.5 93 34.4
Cfa001561 Carpinus fangiana HOM05D005234 ORTHO05D006583 1.0e-06 58.2 93 35.5
PGR044G0090 Punica granatum HOM05D005234 ORTHO05D006583 1.0e-06 58.2 98 35.7
BraA09t40265Z Brassica rapa HOM05D005234 ORTHO05D006583 1.4e-06 57.8 105 33.3
FAN06G4140 Fragaria x ananassa HOM05D005234 ORTHO05D006583 1.4e-06 57.8 119 31.9
Prupe.2G224300 Prunus persica HOM05D005234 ORTHO05D006583 1.4e-06 57.8 144 28.5
Aqoxy4G03096 Aquilegia oxysepala HOM05D005234 ORTHO05D006583 1.8e-06 57.4 93 35.5
BcaC07g39833 Brassica carinata HOM05D005234 ORTHO05D006583 1.8e-06 57.4 105 33.3
C08p30350 Brassica napus HOM05D005234 ORTHO05D006583 1.8e-06 57.4 105 33.3
CSS0032920 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 1.8e-06 57.4 109 33.0
COL.COLO4_05802 Corchorus olitorius HOM05D005234 ORTHO05D006583 1.8e-06 57.4 93 35.5
vmacro07108 Vaccinium macrocarpon HOM05D005234 ORTHO05D006583 1.8e-06 57.4 97 33.0
A09p48110 Brassica napus HOM05D005234 ORTHO05D006583 2.3e-06 57.0 105 32.4
MD00G1163800 Malus domestica HOM05D005234 ORTHO05D006583 2.3e-06 57.0 121 31.4
Nitab4.5_0000271g0220 Nicotiana tabacum HOM05D005234 ORTHO05D006583 2.3e-06 57.0 99 34.3
SMO367G0191 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 2.3e-06 57.0 60 50.0
TAR623G0173 Trochodendron aralioides HOM05D005234 ORTHO05D006583 2.3e-06 57.0 105 33.3
A09p32550 Brassica napus HOM05D005234 ORTHO05D006583 3.0e-06 56.6 98 32.7
FAN06G4823 Fragaria x ananassa HOM05D005234 ORTHO05D006583 3.0e-06 56.6 119 31.9
Os01g0976450 Oryza sativa ssp. japonica HOM05D005234 ORTHO05D006583 3.0e-06 56.6 92 34.8
Ah.16g107860 Amaranthus hybridus HOM05D005234 ORTHO05D006583 4.0e-06 56.2 113 31.9
arahy.Tifrunner.gnm1.ann1.E1ZVHS Arachis hypogaea HOM05D005234 ORTHO05D006583 4.0e-06 56.2 114 32.5
arahy.Tifrunner.gnm1.ann1.IBY72V Arachis hypogaea HOM05D005234 ORTHO05D006583 4.0e-06 56.2 113 32.7
SMO348G0083 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 4.0e-06 56.2 59 47.5
Sc09g0006860 Simmondsia chinensis HOM05D005234 ORTHO05D006583 4.0e-06 56.2 116 29.3
Dinv31388 Davidia involucrata HOM05D005234 ORTHO05D006583 5.2e-06 55.8 93 32.3
Sabra08G0033600 Salix brachista HOM05D005234 ORTHO05D006583 5.2e-06 55.8 97 35.1
Migut.A00396 Erythranthe guttata HOM05D005234 ORTHO05D006583 6.8e-06 55.5 93 32.3
AT3G55080 Arabidopsis thaliana HOM05D005234 ORTHO05D006583 8.9e-06 55.1 125 32.8
EL10Ac2g03507 Beta vulgaris HOM05D005234 ORTHO05D006583 8.9e-06 55.1 93 35.5
AUR62042662 Chenopodium quinoa HOM05D005234 ORTHO05D006583 8.9e-06 55.1 93 36.6
Sp5g07340 Schrenkiella parvula HOM05D005234 ORTHO05D006583 8.9e-06 55.1 105 32.4


User provided reference genes

Program Settings