Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0050s0061 Marchantia polymorpha HOM05D003674 ORTHO05D004226 0.0e+00 1429.5 724 100.0
Pp3c14_20770 Physcomitrium patens HOM05D003674 ORTHO05D004226 4.0e-163 579.3 696 46.1
Pp3c2_10230 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.3e-158 563.5 694 45.1
Mapoly0062s0036 Marchantia polymorpha HOM05D003674 ORTHO05D004226 5.1e-158 562.4 731 43.2
Pp3c1_28370 Physcomitrium patens HOM05D003674 ORTHO05D004226 4.3e-157 559.3 697 44.8
Pp3c21_11410 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.0e-154 550.4 698 44.6
Pp3c18_10190 Physcomitrium patens HOM05D003674 ORTHO05D004226 6.7e-150 535.4 698 43.6
Pp3c19_18680 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.2e-124 450.7 594 41.8
Pp3c3_16950 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.5e-120 437.2 597 41.4
Pp3c15_12230 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.2e-83 313.9 660 32.4
Pp3c1_6270 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.6e-79 300.4 662 31.3
Pp3c1_6272 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.6e-79 300.4 662 31.3
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 5.4e-75 286.6 677 30.6
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 3.3e-72 277.3 696 29.2
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 6.2e-71 273.1 668 29.3
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 4.0e-70 270.4 668 28.9
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 4.0e-70 270.4 670 29.1
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 4.0e-70 270.4 654 28.9
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 4.0e-70 270.4 689 28.4
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 5.2e-70 270.0 654 29.7
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 2.0e-69 268.1 669 29.6
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 3.4e-69 267.3 676 28.4
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 7.6e-69 266.2 665 28.6
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 7.6e-69 266.2 667 29.1
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 9.9e-69 265.8 702 29.1
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 2.2e-68 264.6 676 28.4
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 2.2e-68 264.6 656 28.4
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 2.9e-68 264.2 676 27.4
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 3.8e-68 263.8 664 28.3
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 3.8e-68 263.8 597 30.3
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 4.2e-67 260.4 684 28.5
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 7.1e-67 259.6 672 27.2
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 9.3e-67 259.2 663 28.8
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 9.3e-67 259.2 685 28.2
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 1.2e-66 258.8 666 27.8
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 1.2e-66 258.8 691 29.2
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 1.6e-66 258.5 666 28.8
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 2.7e-66 257.7 674 27.6
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 4.6e-66 256.9 654 27.2
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 6.0e-66 256.5 670 27.2
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 1.0e-65 255.8 690 27.5
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 1.3e-65 255.4 693 28.9
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 2.3e-65 254.6 695 28.3
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 3.0e-65 254.2 670 27.3
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 3.0e-65 254.2 669 28.0
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 5.1e-65 253.4 712 27.1
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 8.7e-65 252.7 708 27.3
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 1.5e-64 251.9 675 27.4
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 1.9e-64 251.5 670 27.2
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 1.9e-64 251.5 666 28.7
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 2.5e-64 251.1 688 27.2
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 2.5e-64 251.1 670 27.5
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 3.3e-64 250.8 670 27.5
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 4.3e-64 250.4 672 28.9
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 5.6e-64 250.0 668 26.2
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 5.6e-64 250.0 700 27.1
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 7.3e-64 249.6 689 27.0
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 1.6e-63 248.4 668 27.2
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 2.8e-63 247.7 677 27.0
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 8.1e-63 246.1 670 27.3
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 1.1e-62 245.7 673 27.3
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 1.1e-62 245.7 662 27.2
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 1.1e-62 245.7 688 26.5
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 1.4e-62 245.4 669 27.1
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 1.4e-62 245.4 675 28.4
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 1.4e-62 245.4 675 28.4
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 1.4e-62 245.4 695 26.9
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 2.4e-62 244.6 676 26.8
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 4.0e-62 243.8 692 25.9
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 4.0e-62 243.8 657 28.6
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 1.2e-61 242.3 694 26.5
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 1.2e-61 242.3 630 28.6
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 1.5e-61 241.9 686 28.3
HPP92_008135 Vanilla planifolia HOM05D003674 ORTHO05D004226 1.5e-61 241.9 665 28.1
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 2.0e-61 241.5 662 25.8
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 3.4e-61 240.7 672 28.4
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 4.5e-61 240.4 670 27.0
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 5.8e-61 240.0 666 26.0
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 5.8e-61 240.0 676 27.7
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 5.8e-61 240.0 685 25.7
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 6.4e-60 236.5 736 27.6
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 8.4e-60 236.1 709 27.1
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 1.1e-59 235.7 727 27.5
Thecc.02G180000 Theobroma cacao HOM05D003674 ORTHO05D004226 1.4e-59 235.3 671 27.0
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 1.9e-59 235.0 666 27.2
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 4.2e-59 233.8 666 28.1
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 3.5e-58 230.7 689 26.9
Zm00001eb360320 Zea mays HOM05D003674 ORTHO05D004226 1.3e-57 228.8 526 30.6
Potri.013G131100 Populus trichocarpa HOM05D003674 ORTHO05D004226 2.3e-57 228.0 716 25.8
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 3.0e-57 227.6 672 26.6
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 6.7e-57 226.5 683 26.5
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 8.7e-57 226.1 695 24.9
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 1.3e-55 222.2 698 27.1
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 2.1e-55 221.5 562 30.1
DCAR_013011 Daucus carota HOM05D003674 ORTHO05D004226 8.1e-55 219.5 679 27.0
Gorai.005G201400 Gossypium raimondii HOM05D003674 ORTHO05D004226 3.1e-54 217.6 672 26.3
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 9.0e-54 216.1 572 27.8
Gohir.A03G156500 Gossypium hirsutum HOM05D003674 ORTHO05D004226 1.2e-53 215.7 674 26.1
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 1.5e-53 215.3 669 26.2
Eucgr.K01030 Eucalyptus grandis HOM05D003674 ORTHO05D004226 1.7e-52 211.8 679 26.8
Nitab4.5_0000512g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 8.4e-52 209.5 585 28.5
Eucgr.K01031 Eucalyptus grandis HOM05D003674 ORTHO05D004226 1.1e-51 209.1 676 26.5
PSO675G3793 Papaver somniferum HOM05D003674 ORTHO05D004226 1.4e-51 208.8 693 25.4
CSS0020583 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 1.2e-50 205.7 678 26.1
Rhsim06G0142000 Rhododendron simsii HOM05D003674 ORTHO05D004226 3.0e-49 201.1 584 27.7
CSS0005418 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 6.7e-49 199.9 677 24.8
Eucgr.K01029 Eucalyptus grandis HOM05D003674 ORTHO05D004226 1.9e-48 198.4 676 25.9
MBI06_g04180_MAGBIO Magnolia biondii HOM05D003674 ORTHO05D004226 1.9e-48 198.4 585 26.8
AUR62037356 Chenopodium quinoa HOM05D003674 ORTHO05D004226 2.5e-48 198.0 634 26.3
Manes.13G146400 Manihot esculenta HOM05D003674 ORTHO05D004226 4.3e-48 197.2 471 30.4
Cpa.g.sc848.1 Carica papaya HOM05D003674 ORTHO05D004226 2.1e-47 194.9 587 25.7
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 2.8e-47 194.5 671 27.7
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 4.8e-47 193.7 635 26.0
Haze_13165 Corylus avellana HOM05D003674 ORTHO05D004226 6.2e-47 193.4 593 26.0
FAN09G3196 Fragaria x ananassa HOM05D000230 ORTHO05D004226 3.1e-46 191.0 573 26.9
PGR142G3148 Punica granatum HOM05D003674 ORTHO05D004226 1.5e-45 188.7 672 25.0
QL08p038913 Quercus lobata HOM05D003674 ORTHO05D004226 4.5e-45 187.2 783 23.5
CAN.G1472.4 Capsicum annuum HOM05D003674 ORTHO05D004226 5.8e-45 186.8 505 27.9
Oeu017491.1 Olea europaea HOM05D003674 ORTHO05D004226 4.9e-44 183.7 479 28.2
ClCG07G002890 Citrullus lanatus HOM05D003674 ORTHO05D004226 1.1e-43 182.6 622 25.4
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 1.3e-41 175.6 684 25.0
Migut.H01178 Erythranthe guttata HOM05D003674 ORTHO05D004226 1.8e-41 175.3 506 27.3
Ah.01g004260 Amaranthus hybridus HOM05D003674 ORTHO05D004226 2.5e-40 171.4 678 25.4
vmacro12305 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 1.2e-37 162.5 467 28.3
TAR624G0173 Trochodendron aralioides HOM05D003674 ORTHO05D004226 1.0e-36 159.5 348 30.5
Oeu058850.1 Olea europaea HOM05D003674 ORTHO05D004226 6.5e-36 156.8 426 30.3
CiPaw.04G126100 Carya illinoinensis HOM05D003674 ORTHO05D004226 3.2e-35 154.5 539 26.7
Peaxi162Scf00132g00117 Petunia axillaris HOM05D003674 ORTHO05D004226 3.2e-35 154.5 569 24.8
AUR62042592 Chenopodium quinoa HOM05D003674 ORTHO05D004226 1.8e-33 148.7 624 25.3
Sabra13G0110700 Salix brachista HOM05D003674 ORTHO05D004226 3.9e-33 147.5 530 25.3
ATR0737G001 Amborella trichopoda HOM05D003674 ORTHO05D004226 2.5e-32 144.8 391 26.3
Sabra13G0110800 Salix brachista HOM05D003674 ORTHO05D004226 3.3e-32 144.4 730 21.8
MSTRG.14332 Avicennia marina HOM05D003674 ORTHO05D004226 2.8e-31 141.4 238 34.5
Hma1.2p1_2586F.1_g324940 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 4.8e-31 140.6 220 36.8
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 3.2e-27 127.9 425 27.8
ATR0737G184 Amborella trichopoda HOM05D003674 ORTHO05D004226 2.7e-26 124.8 161 42.2
Nn1g06549 Nelumbo nucifera HOM05D003674 ORTHO05D004226 7.9e-26 123.2 151 42.4
Nn1g06551 Nelumbo nucifera HOM05D003674 ORTHO05D004226 7.9e-26 123.2 340 27.4
Gohir.D02G179566 Gossypium hirsutum HOM05D003674 ORTHO05D004226 1.4e-25 122.5 213 34.7
TAR624G0523 Trochodendron aralioides HOM05D003674 ORTHO05D004226 1.5e-24 119.0 309 28.2
CBR_g54426 Chara braunii HOM05D003674 ORTHO05D004226 2.0e-24 118.6 444 24.1
Hma1.2p1_1937F.1_g308270 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 1.3e-23 115.9 307 27.4
CiPaw.04G126200 Carya illinoinensis HOM05D003674 ORTHO05D004226 1.7e-20 105.5 142 36.6
Gohir.D02G179632 Gossypium hirsutum HOM05D003674 ORTHO05D004226 1.4e-17 95.9 368 22.8
CDE06G1319 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 1.3e-15 89.4 272 25.4
SHI10407 Sapria himalayana HOM05D003674 ORTHO05D004226 8.2e-15 86.7 277 24.9
CBR_g41145 Chara braunii HOM05D003674 ORTHO05D004226 5.3e-14 84.0 110 36.4
MSTRG.14334 Avicennia marina HOM05D003674 ORTHO05D004226 1.6e-13 82.4 207 29.0
Ca_01497_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 3.5e-13 81.3 124 37.1
Lsat_1_v5_gn_4_64281 Lactuca sativa HOM05D003674 ORTHO05D004226 3.5e-13 81.3 137 33.6
CDE08G1051 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 4.5e-13 80.9 105 41.9
Ca_01498_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 5.9e-13 80.5 277 25.3
Hma1.2p1_1836F.1_g304720 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 3.2e-11 74.7 120 35.0
SEGI_23599 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 4.2e-11 74.3 112 35.7
MSTRG.14337 Avicennia marina HOM05D003674 ORTHO05D004226 1.5e-08 65.9 71 45.1
MSTRG.14339 Avicennia marina HOM05D003674 ORTHO05D004226 1.5e-08 65.9 120 30.0
vmacro12304 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 2.2e-07 62.0 168 26.8


User provided reference genes

Program Settings