Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0048s0107 Marchantia polymorpha HOM05D007613 ORTHO05D009344 1.2e-52 209.5 106 100.0
Pp3c19_22480 Physcomitrium patens HOM05D007613 ORTHO05D009344 2.0e-31 139.0 106 65.1
AagrBONN_evm.TU.Sc2ySwM_362.1645 Anthoceros agrestis HOM05D002174 ORTHO05D005941 2.6e-26 122.1 87 67.8
SMO347G0100 Selaginella moellendorffii HOM05D007613 ORTHO05D009344 4.0e-19 98.2 105 43.8
QL12p028448 Quercus lobata HOM05D007613 ORTHO05D009344 7.8e-15 84.0 96 42.7
PSO170G2016 Papaver somniferum HOM05D007613 ORTHO05D009344 1.7e-14 82.8 96 46.9
CiPaw.07G109200 Carya illinoinensis HOM05D007613 ORTHO05D009344 3.0e-14 82.0 96 42.7
TAR636G2501 Trochodendron aralioides HOM05D007613 ORTHO05D009344 1.2e-12 76.6 93 44.1
Manes.01G219200 Manihot esculenta HOM05D007613 ORTHO05D009344 4.7e-12 74.7 94 40.4
GSVIVG01028017001 Vitis vinifera HOM05D007613 ORTHO05D009344 4.7e-12 74.7 96 42.7
Eucgr.H01109 Eucalyptus grandis HOM05D007613 ORTHO05D009344 6.2e-12 74.3 96 41.7
Psat6g165400 Pisum sativum HOM05D007613 ORTHO05D009344 6.2e-12 74.3 95 44.2
Potri.014G128900 Populus trichocarpa HOM05D007613 ORTHO05D009344 6.2e-12 74.3 94 40.4
Aqoxy2G02939 Aquilegia oxysepala HOM05D007613 ORTHO05D009344 1.1e-11 73.6 91 44.0
PGR119G2478 Punica granatum HOM05D007613 ORTHO05D009344 1.1e-11 73.6 96 39.6
MELO3C016000.2 Cucumis melo HOM05D007613 ORTHO05D009344 1.4e-11 73.2 96 38.5
Duzib133G0913 Durio zibethinus HOM05D007613 ORTHO05D009344 1.4e-11 73.2 93 41.9
TPR.G33996 Trifolium pratense HOM05D007613 ORTHO05D009344 3.1e-11 72.0 95 43.2
Actinidia24821 Actinidia chinensis HOM05D007613 ORTHO05D009344 4.0e-11 71.6 96 41.7
CsaV3_7G029280 Cucumis sativus L. HOM05D007613 ORTHO05D009344 4.0e-11 71.6 96 37.5
arahy.Tifrunner.gnm1.ann1.7MAL8N Arachis hypogaea HOM05D007613 ORTHO05D009344 6.8e-11 70.9 96 39.6
Ciclev10022836m.g Citrus clementina HOM05D007613 ORTHO05D009344 6.8e-11 70.9 91 39.6
CDE08G0198 Ceratophyllum demersum HOM05D007613 ORTHO05D009344 8.9e-11 70.5 92 42.4
arahy.Tifrunner.gnm1.ann1.BW40YJ Arachis hypogaea HOM05D007613 ORTHO05D009344 1.2e-10 70.1 96 39.6
MD03G1288400 Malus domestica HOM05D007613 ORTHO05D009344 1.5e-10 69.7 95 38.9
VMungo0720G1265 Vigna mungo HOM05D007613 ORTHO05D009344 1.5e-10 69.7 95 40.0
Atru.chr5.1146 Acer truncatum HOM05D007613 ORTHO05D009344 2.6e-10 68.9 96 37.5
Ah.08g213430 Amaranthus hybridus HOM05D000286 ORTHO05D000170 4.4e-10 68.2 87 43.7
Gohir.D12G134100 Gossypium hirsutum HOM05D007613 ORTHO05D009344 4.4e-10 68.2 95 40.0
TWI59G0030 Tripterygium wilfordii HOM05D007613 ORTHO05D009344 5.8e-10 67.8 92 41.3
Prupe.8G261600 Prunus persica HOM05D007613 ORTHO05D009344 7.6e-10 67.4 93 38.7
A04p00480 Brassica napus HOM05D007613 ORTHO05D009344 9.9e-10 67.0 95 37.9
BraA04t15767Z Brassica rapa HOM05D007613 ORTHO05D009344 9.9e-10 67.0 95 37.9
ECA248G1192 Erigeron canadensis HOM05D007613 ORTHO05D009344 9.9e-10 67.0 86 43.0
HanXRQChr13g0413041 Helianthus annuus HOM05D007613 ORTHO05D009344 9.9e-10 67.0 86 39.5
Phvul.007G146700 Phaseolus vulgaris HOM05D007613 ORTHO05D009344 9.9e-10 67.0 95 37.9
RcHm_v2.0_Chr6g0294031 Rosa chinensis HOM05D007613 ORTHO05D009344 9.9e-10 67.0 93 43.0
Lsat_1_v5_gn_5_191040 Lactuca sativa HOM05D007613 ORTHO05D009344 1.7e-09 66.2 101 35.6
Pp3c3_19150 Physcomitrium patens HOM05D002174 ORTHO05D005941 1.7e-09 66.2 83 39.8
EL10Ac7g17473 Beta vulgaris HOM05D007613 ORTHO05D009344 2.2e-09 65.9 95 40.0
BcaB02g08092 Brassica carinata HOM05D007613 ORTHO05D009344 2.2e-09 65.9 95 37.9
Gorai.008G145100 Gossypium raimondii HOM05D007613 ORTHO05D009344 2.2e-09 65.9 95 38.9
SMO358G0166 Selaginella moellendorffii HOM05D002174 ORTHO05D005941 2.9e-09 65.5 80 43.8
C04p30380 Brassica napus HOM05D007613 ORTHO05D009344 8.4e-09 63.9 95 36.8
BolC4t24569H Brassica oleracea HOM05D007613 ORTHO05D009344 8.4e-09 63.9 95 36.8
QL01p032005 Quercus lobata HOM05D002174 ORTHO05D005941 8.4e-09 63.9 94 38.3
Ah.12g058520 Amaranthus hybridus HOM05D002174 ORTHO05D005941 1.1e-08 63.5 94 38.3
ATR0706G141 Amborella trichopoda HOM05D007613 ORTHO05D009344 1.1e-08 63.5 96 36.5
MSTRG.18147 Avicennia marina HOM05D007613 ORTHO05D009344 1.1e-08 63.5 98 34.7
Cfa009013 Carpinus fangiana HOM05D002174 ORTHO05D005941 1.4e-08 63.2 94 38.3
Thhalv10006304m.g Eutrema salsugineum HOM05D007613 ORTHO05D009344 1.4e-08 63.2 95 36.8
SEGI_11453 Sequoiadendron giganteum HOM05D002174 ORTHO05D005941 1.4e-08 63.2 96 35.4
Thecc.01G300700 Theobroma cacao HOM05D007613 ORTHO05D009344 1.4e-08 63.2 71 45.1
AL5G45650 Arabidopsis lyrata HOM05D007613 ORTHO05D009344 1.9e-08 62.8 95 35.8
EL10Ac5g12576 Beta vulgaris HOM05D002174 ORTHO05D005941 2.4e-08 62.4 98 36.7
CARHR173140 Cardamine hirsuta HOM05D007613 ORTHO05D009344 2.4e-08 62.4 88 38.6
Cfa011503 Carpinus fangiana HOM05D002174 ORTHO05D005941 2.4e-08 62.4 98 37.8
CAN.G1209.25 Capsicum annuum HOM05D007613 ORTHO05D009344 3.2e-08 62.0 90 35.6
Peaxi162Scf00140g01222 Petunia axillaris HOM05D007613 ORTHO05D009344 3.2e-08 62.0 84 36.9
Hund14299 Selenicereus undatus HOM05D002174 ORTHO05D005941 3.2e-08 62.0 94 38.3
Solyc06g084550.3 Solanum lycopersicum HOM05D007613 ORTHO05D009344 3.2e-08 62.0 84 38.1
Sopen06g035930 Solanum pennellii HOM05D007613 ORTHO05D009344 3.2e-08 62.0 84 38.1
Sp5g00640 Schrenkiella parvula HOM05D007613 ORTHO05D009344 4.1e-08 61.6 88 37.5
AagrBONN_evm.TU.Sc2ySwM_228.3892 Anthoceros agrestis HOM05D002174 ORTHO05D005941 5.4e-08 61.2 97 37.1
AT3G62880 Arabidopsis thaliana HOM05D007613 ORTHO05D009344 5.4e-08 61.2 95 34.7
Hma1.2p1_0035F.1_g022420 Hydrangea macrophylla HOM05D002174 ORTHO05D005941 7.1e-08 60.8 94 38.3
Lj3g0015229 Lotus japonicus HOM05D002174 ORTHO05D005941 7.1e-08 60.8 94 36.2
Nitab4.5_0002820g0060 Nicotiana tabacum HOM05D007613 ORTHO05D009344 7.1e-08 60.8 84 36.9
Nitab4.5_0019054g0010 Nicotiana tabacum HOM05D007613 ORTHO05D009344 7.1e-08 60.8 84 36.9
Sc07g0007940 Simmondsia chinensis HOM05D002174 ORTHO05D005941 7.1e-08 60.8 94 38.3
Aa31LG10G16510 Aethionema arabicum HOM05D007613 ORTHO05D009344 9.2e-08 60.5 95 34.7
MSTRG.17832 Avicennia marina HOM05D002174 ORTHO05D005941 9.2e-08 60.5 94 36.2
CiPaw.13G094300 Carya illinoinensis HOM05D002174 ORTHO05D005941 9.2e-08 60.5 94 36.2
DCAR_018332 Daucus carota HOM05D007613 ORTHO05D009344 9.2e-08 60.5 90 36.7
FAN16G0236 Fragaria x ananassa HOM05D002174 ORTHO05D005941 9.2e-08 60.5 94 38.3
FAN21G2955 Fragaria x ananassa HOM05D002174 ORTHO05D005941 9.2e-08 60.5 94 38.3
MD03G1093500 Malus domestica HOM05D002174 ORTHO05D005941 9.2e-08 60.5 94 36.2
THA.LOC104800661 Tarenaya hassleriana HOM05D002174 ORTHO05D005941 9.2e-08 60.5 94 36.2
vmacro15014 Vaccinium macrocarpon HOM05D007613 ORTHO05D009344 9.2e-08 60.5 91 38.5
AUR62030424 Chenopodium quinoa HOM05D002174 ORTHO05D005941 1.2e-07 60.1 94 36.2
Cc01_g12870 Coffea canephora HOM05D002174 ORTHO05D005941 1.2e-07 60.1 75 44.0
Cc01_g20860 Coffea canephora HOM05D007613 ORTHO05D009344 1.2e-07 60.1 92 35.9
Hma1.2p1_0418F.1_g149160 Hydrangea macrophylla HOM05D002174 ORTHO05D005941 1.2e-07 60.1 94 36.2
Prupe.6G077600 Prunus persica HOM05D002174 ORTHO05D005941 1.2e-07 60.1 94 36.2
RcHm_v2.0_Chr5g0064511 Rosa chinensis HOM05D002174 ORTHO05D005941 1.2e-07 60.1 94 37.2
FAN25G1103 Fragaria x ananassa HOM05D002174 ORTHO05D005941 1.6e-07 59.7 94 38.3
THA.LOC104798831 Tarenaya hassleriana HOM05D007613 ORTHO05D009344 1.6e-07 59.7 95 34.7
vmacro14518 Vaccinium macrocarpon HOM05D002174 ORTHO05D005941 1.6e-07 59.7 94 36.2
CARHR122070 Cardamine hirsuta HOM05D002174 ORTHO05D005941 2.1e-07 59.3 94 36.2
DCAR_005338 Daucus carota HOM05D002174 ORTHO05D005941 2.1e-07 59.3 94 34.0
ECA236G0657 Erigeron canadensis HOM05D002174 ORTHO05D005941 2.1e-07 59.3 95 37.9
TPR.G34319 Trifolium pratense HOM05D002174 ORTHO05D005941 2.1e-07 59.3 80 40.0
ATR0559G109 Amborella trichopoda HOM05D002174 ORTHO05D005941 2.7e-07 58.9 94 37.2
arahy.Tifrunner.gnm1.ann1.M8VE2Y Arachis hypogaea HOM05D002174 ORTHO05D005941 2.7e-07 58.9 75 41.3
FvH4_3g36080 Fragaria vesca HOM05D002174 ORTHO05D005941 2.7e-07 58.9 94 38.3
Glyma.13G336100 Glycine max HOM05D002174 ORTHO05D005941 2.7e-07 58.9 75 41.3
Glyma.15G038200 Glycine max HOM05D002174 ORTHO05D005941 2.7e-07 58.9 75 41.3
Hma1.2p1_0491F.1_g164570 Hydrangea macrophylla HOM05D007613 ORTHO05D009344 2.7e-07 58.9 90 36.7
PSO339G1022 Papaver somniferum HOM05D002174 ORTHO05D005941 2.7e-07 58.9 75 42.7
Sabra16G0144700 Salix brachista HOM05D002174 ORTHO05D005941 2.7e-07 58.9 94 36.2
arahy.Tifrunner.gnm1.ann1.X88BGH Arachis hypogaea HOM05D002174 ORTHO05D005941 3.5e-07 58.5 75 40.0
MBI14_g20104_MAGBIO Magnolia biondii HOM05D002174 ORTHO05D005941 3.5e-07 58.5 75 42.7
Lj5g0017580 Lotus japonicus HOM05D007613 ORTHO05D009344 4.6e-07 58.2 97 34.0
Medtr2g096900 Medicago truncatula HOM05D002174 ORTHO05D005941 4.6e-07 58.2 94 35.1
Os05g0111200 Oryza sativa ssp. japonica HOM05D002174 ORTHO05D005941 4.6e-07 58.2 94 33.0
Atru.chr3.3905 Acer truncatum HOM05D002174 ORTHO05D005941 6.0e-07 57.8 78 38.5
AUR62010472 Chenopodium quinoa HOM05D002174 ORTHO05D005941 6.0e-07 57.8 94 35.1
MD11G1108300 Malus domestica HOM05D002174 ORTHO05D005941 6.0e-07 57.8 94 37.2
Manes.01G174000 Manihot esculenta HOM05D002174 ORTHO05D005941 6.0e-07 57.8 94 37.2
TAR636G3015 Trochodendron aralioides HOM05D002174 ORTHO05D005941 6.0e-07 57.8 75 40.0
CSS0007494 Camellia sinensis var. sinensis HOM05D002174 ORTHO05D005941 7.8e-07 57.4 93 35.5
CANSAT54G0240 Cannabis sativa HOM05D002174 ORTHO05D005941 7.8e-07 57.4 93 35.5
Haze_12046 Corylus avellana HOM05D002174 ORTHO05D005941 7.8e-07 57.4 75 42.7
Glyma.10G018300 Glycine max HOM05D007613 ORTHO05D009344 7.8e-07 57.4 97 36.1
MD11G1108500 Malus domestica HOM05D002174 ORTHO05D005941 7.8e-07 57.4 94 37.2
Peaxi162Scf00032g02518 Petunia axillaris HOM05D002174 ORTHO05D005941 7.8e-07 57.4 94 34.0
Peaxi162Scf00587g00410 Petunia axillaris HOM05D002174 ORTHO05D005941 7.8e-07 57.4 94 34.0
PGR119G2250 Punica granatum HOM05D002174 ORTHO05D005941 7.8e-07 57.4 94 36.2
Cpa.g.sc9.260 Carica papaya HOM05D000286 ORTHO05D000170 1.0e-06 57.0 83 36.1
CsaV3_1G034170 Cucumis sativus L. HOM05D002174 ORTHO05D005941 1.0e-06 57.0 94 35.1
Duzib150G1375 Durio zibethinus HOM05D002174 ORTHO05D005941 1.0e-06 57.0 75 42.7
Migut.B01150 Erythranthe guttata HOM05D007613 ORTHO05D009344 1.0e-06 57.0 69 39.1
Migut.D00222 Erythranthe guttata HOM05D007613 ORTHO05D009344 1.0e-06 57.0 69 39.1
Phvul.L005543 Phaseolus vulgaris HOM05D002174 ORTHO05D005941 1.0e-06 57.0 75 41.3
BcaC02g11023 Brassica carinata HOM05D002174 ORTHO05D005941 1.3e-06 56.6 94 33.0
C04p22080 Brassica napus HOM05D002174 ORTHO05D005941 1.3e-06 56.6 94 33.0
BolC4t23731H Brassica oleracea HOM05D002174 ORTHO05D005941 1.3e-06 56.6 94 33.0
CSS0035653 Camellia sinensis var. sinensis HOM05D002174 ORTHO05D005941 1.3e-06 56.6 93 35.5
Ca_01326_v3 Cicer arietinum L. HOM05D002174 ORTHO05D005941 1.3e-06 56.6 75 41.3
Eucgr.J02053 Eucalyptus grandis HOM05D002174 ORTHO05D005941 1.3e-06 56.6 75 41.3
Manes.07G090900 Manihot esculenta HOM05D002174 ORTHO05D005941 1.3e-06 56.6 94 37.2
Manes.07G091400 Manihot esculenta HOM05D002174 ORTHO05D005941 1.3e-06 56.6 94 37.2
Mapoly0051s0077 Marchantia polymorpha HOM05D002174 ORTHO05D005941 1.3e-06 56.6 77 40.3
Pp3c17_23180 Physcomitrium patens HOM05D002174 ORTHO05D005941 1.3e-06 56.6 79 43.0
Rhsim01G0227500 Rhododendron simsii HOM05D002174 ORTHO05D005941 1.3e-06 56.6 95 35.8
SalBow3G3211 Salvia bowleyana HOM05D002174 ORTHO05D005941 1.3e-06 56.6 75 41.3
BcaB02g10211 Brassica carinata HOM05D002174 ORTHO05D005941 1.7e-06 56.2 94 33.0
A07p19380 Brassica napus HOM05D002174 ORTHO05D005941 1.7e-06 56.2 94 33.0
BraA07t29643Z Brassica rapa HOM05D002174 ORTHO05D005941 1.7e-06 56.2 94 33.0
ClCG03G001540 Citrullus lanatus HOM05D002174 ORTHO05D005941 1.7e-06 56.2 75 40.0
Thhalv10017379m.g Eutrema salsugineum HOM05D002174 ORTHO05D005941 2.3e-06 55.8 94 33.0
FAN12G1542 Fragaria x ananassa HOM05D002174 ORTHO05D005941 2.3e-06 55.8 76 40.8
Hma1.2p1_0418F.1_g149180 Hydrangea macrophylla HOM05D002174 ORTHO05D005941 2.3e-06 55.8 73 38.4
Lj3C829T9 Lonicera japonica HOM05D002174 ORTHO05D005447 2.3e-06 55.8 78 41.0
Rhsim02G0005200 Rhododendron simsii HOM05D002174 ORTHO05D005447 2.3e-06 55.8 79 39.2
VMungo1080G1891 Vigna mungo HOM05D002174 ORTHO05D005941 2.3e-06 55.8 75 40.0
CAN.G111.45 Capsicum annuum HOM05D002174 ORTHO05D005941 3.0e-06 55.5 94 33.0
FAN07G0871 Fragaria x ananassa HOM05D002174 ORTHO05D005941 3.0e-06 55.5 96 35.4
PGSC0003DMG400009672 Solanum tuberosum HOM05D002174 ORTHO05D005941 3.0e-06 55.5 75 38.7
vmacro15190 Vaccinium macrocarpon HOM05D002174 ORTHO05D005447 3.0e-06 55.5 79 39.2
Actinidia40361 Actinidia chinensis HOM05D002174 ORTHO05D005447 3.9e-06 55.1 78 39.7
CDE09G0525 Ceratophyllum demersum HOM05D002174 ORTHO05D005941 3.9e-06 55.1 75 37.3
Pp3c1_40570 Physcomitrium patens HOM05D002174 ORTHO05D005941 3.9e-06 55.1 79 40.5
Potri.001G239900 Populus trichocarpa HOM05D002174 ORTHO05D005941 3.9e-06 55.1 94 36.2
Sopen06g001450 Solanum pennellii HOM05D002174 ORTHO05D005941 3.9e-06 55.1 75 38.7
Ciclev10029517m.g Citrus clementina HOM05D002174 ORTHO05D005941 5.1e-06 54.7 94 35.1
Glyma.02G184800 Glycine max HOM05D002174 ORTHO05D005941 5.1e-06 54.7 75 38.7
Hma1.2p1_0418F.1_g149170 Hydrangea macrophylla HOM05D002174 ORTHO05D005941 5.1e-06 54.7 73 38.4
Nitab4.5_0000272g0180 Nicotiana tabacum HOM05D002174 ORTHO05D005941 5.1e-06 54.7 75 38.7
Nitab4.5_0002836g0030 Nicotiana tabacum HOM05D002174 ORTHO05D005941 5.1e-06 54.7 75 38.7
Sed0016872 Sechium edule HOM05D002174 ORTHO05D005941 5.1e-06 54.7 94 33.0
AT2G28900 Arabidopsis thaliana HOM05D002174 ORTHO05D005941 6.6e-06 54.3 94 34.0
Cpa.g.sc81.151 Carica papaya HOM05D002174 ORTHO05D005941 6.6e-06 54.3 94 31.9
Dinv42951 Davidia involucrata HOM05D002174 ORTHO05D005941 6.6e-06 54.3 79 35.4
Dinv43149 Davidia involucrata HOM05D002174 ORTHO05D005941 6.6e-06 54.3 79 35.4
Migut.D02101 Erythranthe guttata HOM05D002174 ORTHO05D005941 6.6e-06 54.3 93 36.6
Psat5g284600 Pisum sativum HOM05D002174 ORTHO05D005941 6.6e-06 54.3 75 38.7
TPR.G34323 Trifolium pratense HOM05D002174 ORTHO05D005941 6.6e-06 54.3 75 38.7
GSVIVG01035019001 Vitis vinifera HOM05D002174 ORTHO05D005447 6.6e-06 54.3 78 39.7
AL4G23430 Arabidopsis lyrata HOM05D002174 ORTHO05D005941 8.6e-06 53.9 94 33.0
BcaC02g10319 Brassica carinata HOM05D007613 ORTHO05D009344 8.6e-06 53.9 76 36.8
CDE04G1891 Ceratophyllum demersum HOM05D002174 ORTHO05D005941 8.6e-06 53.9 75 38.7
Medtr2g096920 Medicago truncatula HOM05D002174 ORTHO05D005941 8.6e-06 53.9 75 38.7
Nn3g21498 Nelumbo nucifera HOM05D007613 ORTHO05D009344 8.6e-06 53.9 54 46.3
Oeu016484.2 Olea europaea HOM05D002174 ORTHO05D005447 8.6e-06 53.9 78 41.0
Psat3g023720 Pisum sativum HOM05D002174 ORTHO05D005941 8.6e-06 53.9 75 38.7
Sc25g0003390 Simmondsia chinensis HOM05D002174 ORTHO05D005447 8.6e-06 53.9 79 39.2
Thecc.09G322000 Theobroma cacao HOM05D002174 ORTHO05D005941 8.6e-06 53.9 94 36.2
TAR365G0957 Trochodendron aralioides HOM05D002174 ORTHO05D005447 8.6e-06 53.9 78 38.5


User provided reference genes

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