Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 0.0e+00 3856.6 1933 100.0
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 0.0e+00 2129.8 1954 58.8
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 0.0e+00 1860.9 1806 56.0
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 0.0e+00 1523.1 1933 45.2
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 0.0e+00 1511.9 1940 46.2
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 1510.0 1920 45.7
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 1508.8 1920 45.4
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 0.0e+00 1494.2 1950 44.8
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 0.0e+00 1491.5 1929 44.3
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 0.0e+00 1490.7 1943 46.8
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 0.0e+00 1488.4 1930 44.1
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 0.0e+00 1466.8 1926 44.4
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 0.0e+00 1466.1 1928 44.0
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 1465.3 1926 44.1
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 0.0e+00 1461.4 1933 43.4
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 0.0e+00 1459.1 1929 43.8
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1458.4 1942 43.3
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 0.0e+00 1456.8 1923 44.1
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 0.0e+00 1453.7 1936 43.1
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 0.0e+00 1453.0 1951 43.2
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 0.0e+00 1452.2 1935 43.8
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 0.0e+00 1451.4 1933 43.4
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 0.0e+00 1451.4 2044 41.8
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 0.0e+00 1448.7 1936 42.7
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 0.0e+00 1445.6 2043 42.2
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 0.0e+00 1445.6 2017 43.0
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 0.0e+00 1444.5 1945 43.0
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 0.0e+00 1443.3 1890 43.7
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1439.5 1943 42.6
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1439.5 1926 42.9
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1434.5 1957 42.6
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 0.0e+00 1431.8 1931 43.5
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 0.0e+00 1427.5 1775 45.7
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1427.2 1979 41.9
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 0.0e+00 1426.0 1920 43.1
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 0.0e+00 1423.7 1938 41.8
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 0.0e+00 1422.9 1909 42.8
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 0.0e+00 1421.4 1939 42.2
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 1417.5 1924 42.4
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 0.0e+00 1415.2 1941 41.8
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 1412.1 1941 43.0
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 0.0e+00 1412.1 1779 45.5
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 0.0e+00 1407.1 1935 41.8
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 1406.0 1931 42.7
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 0.0e+00 1404.4 1931 42.4
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 0.0e+00 1401.3 1941 42.5
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 0.0e+00 1399.8 1921 42.5
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 0.0e+00 1399.8 2044 41.4
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 0.0e+00 1399.4 1935 42.6
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 1394.8 1945 42.6
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 0.0e+00 1390.9 1943 42.4
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 0.0e+00 1389.0 1940 42.1
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 0.0e+00 1388.6 1950 42.2
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 1388.2 1973 42.3
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 0.0e+00 1387.5 1846 43.6
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 0.0e+00 1384.4 1929 42.4
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 1374.4 1929 41.7
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 0.0e+00 1370.9 2069 40.6
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 0.0e+00 1364.4 1811 44.0
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 0.0e+00 1364.4 1925 41.9
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 1359.0 2044 40.3
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 0.0e+00 1356.7 1925 41.7
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 0.0e+00 1355.9 2258 40.3
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 0.0e+00 1355.5 1958 40.9
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 1349.7 1679 45.2
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 0.0e+00 1349.3 1940 40.6
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 0.0e+00 1346.6 1930 41.9
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1345.9 1918 40.6
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 0.0e+00 1345.1 1923 41.0
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 1344.3 1934 41.4
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 0.0e+00 1339.7 1979 40.9
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 0.0e+00 1338.9 1932 41.0
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 0.0e+00 1337.0 1892 41.3
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 1332.0 1930 40.3
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1321.6 1915 40.2
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 1316.2 1960 40.1
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 1310.8 1940 40.1
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 1310.8 1932 40.3
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 1290.8 1950 39.6
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 1290.0 1932 39.8
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 0.0e+00 1290.0 1932 39.8
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 1286.2 1948 39.6
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 0.0e+00 1251.5 1940 38.7
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 0.0e+00 1247.3 1538 46.0
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 0.0e+00 1230.7 1933 39.5
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1213.7 1613 43.6
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 0.0e+00 1183.7 1554 44.8
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 0.0e+00 1171.8 1930 37.6
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 0.0e+00 1166.0 1715 40.6
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 0.0e+00 1140.9 1279 48.5
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1105.9 1271 48.1
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 2.6e-311 1073.2 1589 39.8
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 2.3e-298 1030.0 1008 53.9
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 7.0e-295 1018.5 1855 36.3
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 8.5e-293 1011.5 909 61.2
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 7.2e-284 981.9 1409 41.4
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 1.4e-274 951.0 980 51.8
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 1.0e-261 908.3 1482 38.4
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 3.4e-257 893.3 950 51.2
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 1.9e-247 860.9 1420 39.1
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 1.6e-246 857.8 805 55.2
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 1.7e-240 837.8 1291 39.7
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 1.6e-206 724.9 1220 37.9
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.1e-204 718.8 1105 38.8
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 4.3e-204 716.8 901 47.2
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 3.1e-194 684.1 866 45.7
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 4.4e-164 583.9 532 57.5
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 3.4e-156 557.8 771 41.5
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 4.4e-156 557.4 529 54.3
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 6.8e-149 533.5 529 53.3
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 1.1e-141 509.6 820 41.2
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 1.3e-136 492.7 758 39.1
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 6.4e-131 473.8 548 48.0
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 4.6e-129 467.6 966 33.6
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 3.9e-120 438.0 582 46.4
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 3.0e-112 411.8 839 33.8
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 6.6e-112 410.6 914 34.2
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 1.7e-99 369.4 398 49.2
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 8.4e-99 367.1 324 57.4
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 1.8e-93 349.4 451 45.0
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 6.9e-93 347.4 696 33.2
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 3.4e-92 345.1 300 58.3
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 2.9e-91 342.0 432 44.4
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 5.1e-80 304.7 665 31.4
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 2.8e-78 298.9 662 30.7
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 2.6e-71 275.8 402 44.0
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 3.8e-67 261.9 404 38.6
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 5.0e-67 261.5 430 39.3
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 2.5e-66 259.2 189 67.2
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 5.5e-66 258.1 253 53.4
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 1.5e-63 250.0 464 36.9
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 2.9e-51 209.1 569 28.1
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 4.4e-47 195.3 552 28.3
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 8.6e-43 181.0 329 36.5
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 7.0e-37 161.4 355 31.5
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 1.7e-35 156.8 429 29.8
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 1.4e-32 147.1 332 33.1
SEGI_23081 Sequoiadendron giganteum HOM05D003492 ORTHO05D019467 3.4e-31 142.5 220 41.4
SEGI_03313 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 1.4e-29 137.1 225 38.7
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 7.3e-26 124.8 344 30.2
Thhalv10015394m.g Eutrema salsugineum HOM05D003492 ORTHO05D035223 2.6e-23 116.3 185 40.5
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 1.4e-21 110.5 166 33.1
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.9e-21 110.2 186 38.7
Cc02_g06290 Coffea canephora HOM05D003492 ORTHO05D005115 1.6e-20 107.1 101 52.5
HPP92_012036 Vanilla planifolia HOM05D003492 ORTHO05D005115 2.7e-20 106.3 245 31.4
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 1.3e-19 104.0 101 43.6
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 5.8e-15 88.6 135 40.7
Actinidia03517 Actinidia chinensis HOM05D003492 ORTHO05D005115 8.3e-14 84.7 54 68.5
Lsat_1_v5_gn_1_82880 Lactuca sativa HOM05D003492 ORTHO05D005115 1.4e-13 84.0 122 44.3
SHI03327 Sapria himalayana HOM05D003492 ORTHO05D000001 2.3e-11 76.6 101 40.6
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 3.0e-11 76.3 160 31.9
Duzib114G0096 Durio zibethinus HOM05D003492 ORTHO05D005115 3.9e-11 75.9 129 34.9
Lsat_1_v5_gn_9_80501 Lactuca sativa HOM05D003662 ORTHO05D001824 6.6e-11 75.1 179 33.5
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 5.6e-10 72.0 91 42.9
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 8.1e-09 68.2 193 25.4
BcaB01g05927 Brassica carinata HOM05D003492 ORTHO05D016080 1.8e-08 67.0 70 44.3
Lsat_1_v5_gn_7_99341 Lactuca sativa HOM05D003492 ORTHO05D016080 1.8e-08 67.0 68 36.8
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 3.1e-08 66.2 106 34.9
MBI12_g24829_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D011152 2.6e-07 63.2 153 26.1


User provided reference genes

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