Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 1.0e-269 932.9 501 100.0
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 1.4e-82 311.2 512 44.5
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 5.4e-82 309.3 515 46.2
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.3e-80 303.9 506 46.2
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 3.0e-80 303.5 506 45.8
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 6.6e-80 302.4 506 46.0
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.5e-79 300.4 516 42.4
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 5.6e-79 299.3 532 42.1
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 5.6e-79 299.3 505 43.0
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 7.3e-79 298.9 502 44.4
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.8e-78 297.0 507 43.8
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 3.6e-78 296.6 502 42.2
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 4.7e-78 296.2 510 41.6
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 6.2e-78 295.8 501 42.3
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 1.4e-77 294.7 504 41.3
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.4e-77 294.7 500 42.6
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 1.8e-77 294.3 516 42.8
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 1.8e-77 294.3 507 41.2
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.3e-77 293.9 504 39.9
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 5.2e-77 292.7 497 41.4
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 8.9e-77 292.0 504 41.7
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 8.9e-77 292.0 500 42.8
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 1.2e-76 291.6 537 41.3
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 2.0e-76 290.8 498 43.4
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 2.6e-76 290.4 495 42.2
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 3.4e-76 290.0 503 43.1
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 4.4e-76 289.7 535 39.6
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 4.4e-76 289.7 501 43.3
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 7.6e-76 288.9 504 41.3
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 9.9e-76 288.5 503 44.9
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 9.9e-76 288.5 497 45.7
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 1.3e-75 288.1 500 41.6
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 1.3e-75 288.1 498 42.2
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.7e-75 287.7 514 40.3
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 2.2e-75 287.3 499 41.9
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 2.9e-75 287.0 520 40.6
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 4.9e-75 286.2 510 41.2
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 6.4e-75 285.8 506 41.1
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 1.1e-74 285.0 511 41.5
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 1.1e-74 285.0 518 39.6
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 1.1e-74 285.0 502 41.2
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.9e-74 284.3 504 40.9
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 2.4e-74 283.9 510 40.8
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 3.2e-74 283.5 504 41.3
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 4.1e-74 283.1 498 41.0
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.1e-74 283.1 512 40.4
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 7.1e-74 282.3 500 46.0
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 9.2e-74 282.0 501 44.7
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 3.5e-73 280.0 524 38.5
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 6.0e-73 279.3 511 40.3
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 6.0e-73 279.3 507 40.2
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 6.0e-73 279.3 502 42.0
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 7.8e-73 278.9 502 42.8
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 1.0e-72 278.5 507 41.8
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 1.0e-72 278.5 497 45.9
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 1.3e-72 278.1 506 40.1
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 1.3e-72 278.1 526 39.2
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 1.7e-72 277.7 512 40.4
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.7e-72 277.7 516 40.5
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 3.0e-72 276.9 538 38.7
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 3.9e-72 276.6 556 37.6
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 6.6e-72 275.8 515 40.6
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 6.6e-72 275.8 530 39.1
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 8.6e-72 275.4 500 40.2
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 1.1e-71 275.0 497 39.8
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 1.1e-71 275.0 510 40.0
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 1.5e-71 274.6 509 39.9
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 1.9e-71 274.2 510 45.5
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 2.5e-71 273.9 515 39.6
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 5.6e-71 272.7 536 37.5
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 1.6e-70 271.2 499 39.3
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 1.6e-70 271.2 511 38.9
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.1e-70 270.8 532 38.3
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 2.1e-70 270.8 532 38.2
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 2.8e-70 270.4 541 37.5
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 3.6e-70 270.0 507 40.4
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 3.6e-70 270.0 534 38.4
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 6.2e-70 269.2 507 40.2
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 8.1e-70 268.9 544 37.3
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 8.1e-70 268.9 501 39.5
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 1.1e-69 268.5 508 40.0
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 2.4e-69 267.3 497 41.2
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 1.2e-68 265.0 497 39.6
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 2.0e-68 264.2 489 40.1
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 3.4e-68 263.5 506 39.5
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 7.6e-68 262.3 166 75.9
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 2.9e-67 260.4 501 40.7
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 4.9e-67 259.6 556 36.9
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 8.4e-67 258.8 534 38.4
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 8.4e-67 258.8 159 78.6
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 8.4e-67 258.8 284 53.5
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 1.1e-66 258.5 497 39.8
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 1.1e-66 258.5 503 40.0
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 1.1e-66 258.5 504 38.5
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 1.9e-66 257.7 502 41.0
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 9.3e-66 255.4 508 38.4
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 2.7e-65 253.8 502 38.8
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 6.0e-65 252.7 501 40.7
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.3e-64 251.5 498 39.8
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 1.7e-64 251.1 497 37.8
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 3.0e-64 250.4 205 64.4
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 6.6e-64 249.2 503 43.9
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 8.7e-64 248.8 201 64.2
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.9e-63 247.7 504 39.9
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 5.6e-63 246.1 471 39.7
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.1e-62 244.2 159 73.6
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 2.8e-62 243.8 503 38.2
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 9.0e-61 238.8 521 40.7
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 3.2e-58 230.3 446 40.4
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 4.2e-58 229.9 474 39.2
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 9.3e-58 228.8 255 52.5
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 1.6e-57 228.0 485 37.9
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 1.9e-55 221.1 494 38.1
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 3.1e-53 213.8 469 37.7
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 4.9e-51 206.5 495 38.6
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 3.5e-49 200.3 123 78.0
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 3.9e-48 196.8 515 35.1
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.4e-45 188.3 238 50.0
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 5.8e-44 183.0 442 37.3
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 1.0e-40 172.2 473 35.1
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 3.0e-40 170.6 159 57.9
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 1.6e-38 164.9 128 65.6
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 4.1e-37 160.2 440 34.8
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 8.4e-35 152.5 525 36.0
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 1.1e-34 152.1 158 50.0
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 5.5e-34 149.8 561 29.8
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 3.0e-32 144.1 196 44.9
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 1.1e-31 142.1 153 46.4
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 3.7e-30 137.1 409 34.2
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 9.0e-29 132.5 147 43.5
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 5.9e-20 103.2 62 71.0
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 1.4e-18 98.6 65 75.4
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 1.0e-16 92.4 97 53.6
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 1.3e-14 85.5 236 34.3
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 2.0e-12 78.2 62 62.9
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 2.0e-12 78.2 62 62.9
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 7.7e-12 76.3 101 40.6
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 7.7e-12 76.3 101 40.6
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.9e-10 71.6 75 49.3
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.9e-10 71.6 47 70.2
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 2.5e-10 71.2 49 61.2
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 2.5e-10 71.2 467 24.8
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 4.7e-09 67.0 185 30.8
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 6.1e-09 66.6 55 60.0
Sp5g03890 Schrenkiella parvula HOM05D000230 ORTHO05D000176 2.2e-06 58.2 126 25.4
Aa31LG10G13570 Aethionema arabicum HOM05D000230 ORTHO05D000176 2.8e-06 57.8 126 25.4
AT3G59100 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 2.8e-06 57.8 126 25.4
Carub.0005s2586 Capsella rubella HOM05D000230 ORTHO05D000176 2.8e-06 57.8 126 25.4
Thhalv10005734m.g Eutrema salsugineum HOM05D000230 ORTHO05D000176 3.7e-06 57.4 126 25.4
AL5G40990 Arabidopsis lyrata HOM05D000230 ORTHO05D000176 4.8e-06 57.0 126 25.4
Nn3g20650 Nelumbo nucifera HOM05D000230 ORTHO05D000176 4.8e-06 57.0 135 27.4
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 8.2e-06 56.2 126 25.4
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 8.2e-06 56.2 126 25.4
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 8.2e-06 56.2 126 25.4
ECA238G0891 Erigeron canadensis HOM05D000230 ORTHO05D000176 8.2e-06 56.2 127 24.4


User provided reference genes

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