Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0043s0008 Marchantia polymorpha HOM05D003586 ORTHO05D004036 0.0e+00 4044.2 2154 100.0
Pp3c3_10580 Physcomitrium patens HOM05D003586 ORTHO05D004036 0.0e+00 1277.3 2228 38.1
AagrBONN_evm.TU.Sc2ySwM_344.3595 Anthoceros agrestis HOM05D003586 ORTHO05D004036 0.0e+00 1221.1 2092 37.7
SMO358G0582 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 0.0e+00 1190.3 2168 36.0
CBR_g19186 Chara braunii HOM05D003586 ORTHO05D004036 1.2e-295 1021.1 2340 32.7
TAR375G0563 Trochodendron aralioides HOM05D003586 ORTHO05D004036 5.0e-294 1015.8 2216 32.5
Manes.14G038400 Manihot esculenta HOM05D003586 ORTHO05D004036 2.3e-286 990.3 2217 32.1
PSO675G9104 Papaver somniferum HOM05D003586 ORTHO05D004036 3.0e-286 989.9 2217 32.1
Aqoxy7G00839 Aquilegia oxysepala HOM05D003586 ORTHO05D004036 1.9e-285 987.3 2212 32.5
CSS0040773 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 2.2e-281 973.8 2225 32.4
PSO732G0142 Papaver somniferum HOM05D003586 ORTHO05D004036 2.9e-281 973.4 2209 31.7
vmacro06834 Vaccinium macrocarpon HOM05D003586 ORTHO05D004036 8.3e-281 971.8 2243 32.0
Potri.003G151500 Populus trichocarpa HOM05D003586 ORTHO05D004036 1.4e-280 971.1 2210 31.4
Ciclev10004122m.g Citrus clementina HOM05D003586 ORTHO05D004036 9.2e-280 968.4 2226 31.7
Nn1g00886 Nelumbo nucifera HOM05D003586 ORTHO05D004036 1.2e-279 968.0 2218 31.8
Gorai.001G050900 Gossypium raimondii HOM05D003586 ORTHO05D004036 8.6e-278 961.8 2229 31.9
Dinv06595 Davidia involucrata HOM05D003586 ORTHO05D004036 7.3e-277 958.7 2233 32.6
MD07G1249300 Malus domestica HOM05D003586 ORTHO05D004036 7.3e-277 958.7 2214 32.2
Rhsim03G0161600 Rhododendron simsii HOM05D003586 ORTHO05D004036 7.3e-277 958.7 2303 31.9
Gohir.D07G047701 Gossypium hirsutum HOM05D003586 ORTHO05D004036 1.2e-276 958.0 2229 31.9
Cfa013573 Carpinus fangiana HOM05D003586 ORTHO05D004036 2.3e-275 953.7 2218 32.5
Thecc.03G149300 Theobroma cacao HOM05D003586 ORTHO05D004036 3.1e-275 953.4 2236 31.8
Oeu060859.1 Olea europaea HOM05D003586 ORTHO05D004036 3.4e-274 949.9 2219 32.8
CsaV3_4G004170 Cucumis sativus L. HOM05D003586 ORTHO05D004036 1.7e-273 947.6 2215 32.1
GSVIVG01013976001 Vitis vinifera HOM05D003586 ORTHO05D004036 1.9e-272 944.1 2243 31.9
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 9.2e-272 941.8 2263 32.3
Gohir.A07G043301 Gossypium hirsutum HOM05D003586 ORTHO05D004036 2.7e-271 940.3 2219 31.9
CSS0004894 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 1.1e-269 934.9 2229 31.8
QL09p028029 Quercus lobata HOM05D003586 ORTHO05D004036 1.5e-269 934.5 2266 30.9
Prupe.2G273000 Prunus persica HOM05D003586 ORTHO05D004036 4.7e-268 929.5 2221 31.7
Hund18595 Selenicereus undatus HOM05D003586 ORTHO05D004036 8.1e-268 928.7 2215 31.8
TWI23G0434 Tripterygium wilfordii HOM05D003586 ORTHO05D004036 6.8e-267 925.6 2229 32.1
ATR0057G101 Amborella trichopoda HOM05D003586 ORTHO05D004036 1.2e-266 924.9 2255 32.4
DCAR_027698 Daucus carota HOM05D003586 ORTHO05D004036 4.4e-266 922.9 2243 31.6
Zm00001eb123540 Zea mays HOM05D003586 ORTHO05D004036 5.8e-266 922.5 2212 31.3
EL10Ac7g18161 Beta vulgaris HOM05D003586 ORTHO05D004036 2.4e-264 917.1 2232 32.2
Lsat_1_v5_gn_8_9561 Lactuca sativa HOM05D003586 ORTHO05D004036 2.7e-263 913.7 2213 31.0
MSTRG.139 Avicennia marina HOM05D003586 ORTHO05D004036 4.6e-263 912.9 2220 32.1
Sabra03G0109700 Salix brachista HOM05D003586 ORTHO05D004036 1.0e-262 911.8 2322 30.1
AUR62025663 Chenopodium quinoa HOM05D003586 ORTHO05D004036 8.7e-262 908.7 2221 31.5
Sed0010855 Sechium edule HOM05D003586 ORTHO05D004036 1.9e-261 907.5 2225 31.6
FvH4_7g26990 Fragaria vesca HOM05D003586 ORTHO05D004036 2.5e-261 907.1 2216 32.0
AUR62001342 Chenopodium quinoa HOM05D003586 ORTHO05D004036 2.1e-260 904.0 2220 31.4
arahy.Tifrunner.gnm1.ann1.DI5547 Arachis hypogaea HOM05D003586 ORTHO05D004036 6.2e-260 902.5 2224 31.3
HanXRQChr05g0139491 Helianthus annuus HOM05D003586 ORTHO05D004036 9.0e-259 898.7 2228 31.2
Lalb_Chr04g0248471 Lupinus albus HOM05D003586 ORTHO05D004036 2.0e-258 897.5 2220 31.8
arahy.Tifrunner.gnm1.ann1.1899LM Arachis hypogaea HOM05D003586 ORTHO05D004036 2.6e-258 897.1 2224 31.1
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 2.6e-258 897.1 2220 31.5
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 3.4e-258 896.7 2224 31.2
Sopen03g024310 Solanum pennellii HOM05D003586 ORTHO05D004036 2.9e-257 893.6 2223 30.9
FAN06G2502 Fragaria x ananassa HOM05D003586 ORTHO05D004036 4.9e-257 892.9 2242 31.5
PGR042G0622 Punica granatum HOM05D003586 ORTHO05D004036 8.4e-257 892.1 2226 31.2
Nitab4.5_0003173g0040 Nicotiana tabacum HOM05D003586 ORTHO05D004036 1.1e-256 891.7 2227 31.2
Solyc03g093480.3 Solanum lycopersicum HOM05D003586 ORTHO05D004036 2.4e-256 890.6 2223 30.8
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 3.2e-256 890.2 2207 31.4
Duzib205G0263 Durio zibethinus HOM05D003586 ORTHO05D004036 9.3e-256 888.6 2213 31.0
Glyma.02G290200 Glycine max HOM05D003586 ORTHO05D004036 4.6e-255 886.3 2227 31.7
FAN03G1177 Fragaria x ananassa HOM05D003586 ORTHO05D004036 1.0e-254 885.2 2239 31.5
Haze_22192 Corylus avellana HOM05D003586 ORTHO05D004036 5.1e-254 882.9 2256 30.9
FAN01G1639 Fragaria x ananassa HOM05D003586 ORTHO05D004036 6.6e-254 882.5 2252 31.2
FAN10G2285 Fragaria x ananassa HOM05D003586 ORTHO05D004036 5.6e-253 879.4 2237 31.3
Peaxi162Scf00271g00727 Petunia axillaris HOM05D003586 ORTHO05D004036 8.1e-252 875.5 2219 30.7
THA.LOC104811536 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 1.8e-251 874.4 2278 30.9
LjContig00272g0012466 Lotus japonicus HOM05D003586 ORTHO05D004036 9.0e-251 872.1 2225 30.9
Glyma.14G024600 Glycine max HOM05D003586 ORTHO05D004036 3.4e-250 870.2 2224 31.2
Lj8C46T11 Lonicera japonica HOM05D003586 ORTHO05D004036 1.9e-248 864.4 2201 30.6
Phvul.008G266400 Phaseolus vulgaris HOM05D003586 ORTHO05D004036 7.1e-248 862.4 2235 30.6
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 2.1e-247 860.9 2214 30.6
Cc02_g04680 Coffea canephora HOM05D003586 ORTHO05D004036 4.6e-247 859.8 2219 31.5
BraA05t22871Z Brassica rapa HOM05D003586 ORTHO05D004036 8.7e-246 855.5 2274 30.4
Migut.O00372 Erythranthe guttata HOM05D003586 ORTHO05D004036 4.0e-243 846.7 2221 29.9
Thhalv10019871m.g Eutrema salsugineum HOM05D003586 ORTHO05D004036 9.9e-242 842.0 2274 30.3
Medtr5g092370 Medicago truncatula HOM05D003586 ORTHO05D004036 3.2e-240 837.0 2220 31.4
Ah.08g217720 Amaranthus hybridus HOM05D003586 ORTHO05D004036 9.3e-240 835.5 2209 31.1
C05p60700 Brassica napus HOM05D003586 ORTHO05D004036 3.3e-237 827.0 2277 29.8
AL3G17560 Arabidopsis lyrata HOM05D003586 ORTHO05D004036 9.6e-237 825.5 2279 30.2
Aa31LG5G17060 Aethionema arabicum HOM05D003586 ORTHO05D004036 2.1e-236 824.3 2269 30.2
Carub.0003s0599 Capsella rubella HOM05D003586 ORTHO05D004036 1.4e-235 821.6 2278 30.2
Sp3g05470 Schrenkiella parvula HOM05D003586 ORTHO05D004036 1.3e-233 815.1 2269 29.9
BolC5t34730H Brassica oleracea HOM05D003586 ORTHO05D004036 1.7e-233 814.7 2287 29.7
CARHR081080 Cardamine hirsuta HOM05D003586 ORTHO05D004036 3.2e-232 810.4 2274 30.2
AT3G06530 Arabidopsis thaliana HOM05D003586 ORTHO05D004036 3.5e-231 807.0 2272 29.8
SGA_v2.0_scaffold56G19917 Striga asiatica HOM05D003586 ORTHO05D004036 2.4e-227 794.3 2320 29.3
SHI14045 Sapria himalayana HOM05D003586 ORTHO05D004036 1.9e-216 758.1 2369 29.4
Sc20g0000680 Simmondsia chinensis HOM05D003586 ORTHO05D004036 5.5e-216 756.5 2003 30.5
CDE04G1406 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 2.6e-213 747.7 2202 28.6
CiPaw.07G185400 Carya illinoinensis HOM05D003586 ORTHO05D004036 1.9e-208 731.5 2007 29.2
Nitab4.5_0005495g0020 Nicotiana tabacum HOM05D003586 ORTHO05D004036 6.1e-191 673.3 1952 29.1
RcHm_v2.0_Chr1g0373721 Rosa chinensis HOM05D003586 ORTHO05D004036 4.0e-190 670.6 1856 30.0
Eucgr.A02921 Eucalyptus grandis HOM05D003586 ORTHO05D004036 1.3e-188 665.6 1820 31.4
Actinidia13607 Actinidia chinensis HOM05D003586 ORTHO05D004036 3.0e-182 644.4 1428 33.6
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 1.1e-179 636.0 1884 29.6
SalBow2G0990 Salvia bowleyana HOM05D003586 ORTHO05D004036 1.8e-179 635.2 1565 31.8
BolC3t16501H Brassica oleracea HOM05D003586 ORTHO05D004036 1.7e-177 628.6 1875 29.1
C03p42210 Brassica napus HOM05D003586 ORTHO05D004036 4.3e-176 624.0 1872 28.8
A05p41500 Brassica napus HOM05D003586 ORTHO05D004036 5.6e-176 623.6 1873 28.6
A03p34730 Brassica napus HOM05D003586 ORTHO05D004036 1.2e-175 622.5 1884 29.0
BraA03t12653Z Brassica rapa HOM05D003586 ORTHO05D004036 1.0e-174 619.4 1888 28.8
ClCG07G016940 Citrullus lanatus HOM05D003586 ORTHO05D004036 7.8e-170 603.2 1736 29.4
CAN.G485.20 Capsicum annuum HOM05D003586 ORTHO05D004036 6.2e-159 567.0 1393 31.4
Hma1.2p1_1404F.1_g281290 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 1.2e-157 562.8 1151 34.2
unitig_62.g23920 Utricularia gibba HOM05D003586 ORTHO05D004036 4.4e-157 560.8 2224 26.0
Cpa.g.sc13.262 Carica papaya HOM05D003586 ORTHO05D004036 1.3e-143 516.2 996 36.4
Atru.chr1.904 Acer truncatum HOM05D003586 ORTHO05D004036 4.9e-140 504.2 1414 29.3
HPP92_014934 Vanilla planifolia HOM05D003586 ORTHO05D004036 1.3e-137 496.1 1230 31.5
MBI05_g28033_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 8.4e-132 476.9 805 38.6
Hma1.2p1_1404F.1_g281300 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 5.5e-123 447.6 734 38.3
MELO3C017650.2 Cucumis melo HOM05D003586 ORTHO05D004036 3.4e-117 428.3 1207 30.2
SEGI_04827 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 1.2e-114 419.9 644 37.7
MCO07G739 Micromonas commoda HOM05D003586 ORTHO05D004036 1.1e-110 406.8 2456 24.3
MBI01_g47166_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.4e-110 406.4 837 36.2
MBI13_g48198_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 7.2e-107 394.0 847 34.7
HPP92_014907 Vanilla planifolia HOM05D003586 ORTHO05D004036 2.7e-98 365.5 1177 27.6
MBI13_g42134_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.2e-93 350.1 808 33.9
Cre12.g548000 Chlamydomonas reinhardtii HOM05D003586 ORTHO05D004036 6.3e-79 301.2 2587 21.5
SalBow2G2772 Salvia bowleyana HOM05D003586 ORTHO05D004036 4.5e-77 295.0 636 32.9
CAN.G485.19 Capsicum annuum HOM05D003586 ORTHO05D004036 4.2e-75 288.5 634 30.1
Hma1.2p1_1580F.1_g291890 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 1.6e-74 286.6 632 31.8
Cpa.g.sc13.258 Carica papaya HOM05D003586 ORTHO05D004036 4.7e-74 285.0 570 33.0
MBI01_g18557_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 5.2e-73 281.6 403 43.9
ClCG07G016950 Citrullus lanatus HOM05D003586 ORTHO05D004036 2.8e-71 275.8 496 35.3
MBI05_g26488_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 5.4e-70 271.6 1459 25.2
CANSAT56G4028 Cannabis sativa HOM05D003586 ORTHO05D004036 1.6e-69 270.0 838 28.3
MBI01_g30817_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.2e-66 260.4 617 32.3
MBI01_g47186_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 4.9e-63 248.4 672 31.1
MBI05_g26487_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.4e-62 246.9 407 37.3
RcHm_v2.0_Chr1g0373711 Rosa chinensis HOM05D003586 ORTHO05D004036 1.5e-59 236.9 361 40.7
THA.LOC104802945 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 9.8e-56 224.2 256 48.4
Os04g0548300 Oryza sativa ssp. japonica HOM05D003586 ORTHO05D004036 2.5e-51 209.5 228 51.3
Oeu013973.1 Olea europaea HOM05D003586 ORTHO05D004036 9.5e-51 207.6 311 39.2
Oeu055354.1 Olea europaea HOM05D003586 ORTHO05D004036 2.8e-50 206.1 390 35.6
Nitab4.5_0005495g0030 Nicotiana tabacum HOM05D003586 ORTHO05D004036 2.0e-48 199.9 311 37.9
MBI13_g19469_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 7.5e-48 198.0 747 25.8
Migut.F01200 Erythranthe guttata HOM05D003586 ORTHO05D004036 7.8e-45 188.0 217 48.4
FAN06G2869 Fragaria x ananassa HOM05D003586 ORTHO05D004036 2.2e-39 169.9 196 45.9
TPR.G35189 Trifolium pratense HOM05D003586 ORTHO05D004036 7.8e-37 161.4 388 30.7
Cfa023294 Carpinus fangiana HOM05D003586 ORTHO05D004036 1.4e-33 150.6 1312 22.3
SHI14048 Sapria himalayana HOM05D003586 ORTHO05D004036 2.0e-32 146.7 823 23.7
MBI01_g24305_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 3.8e-31 142.5 389 29.8
Dinv06589 Davidia involucrata HOM05D003586 ORTHO05D004036 2.1e-29 136.7 125 54.4
PGSC0003DMG400010751 Solanum tuberosum HOM05D003586 ORTHO05D004036 1.9e-27 130.2 112 58.9
SHI14050 Sapria himalayana HOM05D003586 ORTHO05D004036 1.1e-25 124.4 143 47.6
FAN06G4468 Fragaria x ananassa HOM05D003586 ORTHO05D004036 2.6e-24 119.8 611 23.6
PSO782G1165 Papaver somniferum HOM05D003586 ORTHO05D004036 1.2e-21 110.9 236 30.5
MBI13_g17200_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 5.1e-20 105.5 94 60.6
Lsat_1_v5_gn_1_161 Lactuca sativa HOM05D003586 ORTHO05D004036 9.6e-19 101.3 284 26.4
Rhsim03G0111100 Rhododendron simsii HOM05D003586 ORTHO05D004036 2.8e-18 99.8 120 43.3
MBI01_g47337_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.4e-17 96.7 503 24.5
SEGI_01219 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 3.4e-16 92.8 234 29.5
Psat0s4851g0040 Pisum sativum HOM05D003586 ORTHO05D004036 8.4e-15 88.2 218 29.8
Psat0s7016g0120 Pisum sativum HOM05D003586 ORTHO05D004036 8.4e-15 88.2 218 29.8
SMO142G0017 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 3.5e-13 82.8 221 27.6
MBI01_g18556_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.3e-12 80.9 333 26.7
SEGI_38341 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 1.3e-12 80.9 165 35.2
Psat5g116160 Pisum sativum HOM05D003586 ORTHO05D004036 5.1e-12 79.0 149 32.2
Gorai.003G117300 Gossypium raimondii HOM05D003586 ORTHO05D004036 4.3e-11 75.9 186 25.3
SMO358G0141 Selaginella moellendorffii HOM05D003586 ORTHO05D377094 2.8e-10 73.2 179 30.2
Gohir.D03G110801 Gossypium hirsutum HOM05D003586 ORTHO05D004036 8.1e-10 71.6 186 24.7
PRCOL_00000377 Prasinoderma coloniale HOM05D003586 ORTHO05D004036 4.0e-09 69.3 903 21.0


User provided reference genes

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