Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 5.3e-254 880.6 449 100.0
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 1.7e-103 380.6 309 62.1
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 1.9e-94 350.5 285 62.8
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 3.0e-92 343.2 278 61.2
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 8.8e-92 341.7 278 61.2
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 2.0e-91 340.5 300 57.0
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 2.0e-91 340.5 277 62.1
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 2.6e-91 340.1 290 59.7
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 3.3e-91 339.7 278 60.1
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 4.4e-91 339.3 283 61.5
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 5.7e-91 339.0 278 61.9
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 5.7e-91 339.0 278 62.2
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 5.7e-91 339.0 288 59.0
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 7.4e-91 338.6 290 58.3
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 9.7e-91 338.2 278 61.2
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 1.7e-90 337.4 280 58.6
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 2.8e-90 336.7 293 59.4
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 4.8e-90 335.9 280 60.7
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 4.8e-90 335.9 280 60.0
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 8.2e-90 335.1 278 59.7
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 1.4e-89 334.3 278 60.1
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 1.8e-89 334.0 278 60.8
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 1.8e-89 334.0 278 60.4
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 2.4e-89 333.6 275 59.6
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 2.4e-89 333.6 278 60.4
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 3.1e-89 333.2 278 60.4
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 3.1e-89 333.2 294 58.5
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 4.1e-89 332.8 278 60.1
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 4.1e-89 332.8 291 58.8
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 5.3e-89 332.4 275 60.7
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 5.3e-89 332.4 278 59.7
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 5.3e-89 332.4 278 60.1
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 5.3e-89 332.4 278 59.7
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 7.0e-89 332.0 301 56.1
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 7.0e-89 332.0 278 60.4
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 7.0e-89 332.0 295 58.3
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 9.1e-89 331.6 275 60.7
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 1.2e-88 331.3 296 57.8
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 1.2e-88 331.3 295 56.9
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 1.2e-88 331.3 288 57.6
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 1.6e-88 330.9 281 59.1
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 2.0e-88 330.5 294 57.8
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 2.6e-88 330.1 275 60.7
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 2.6e-88 330.1 275 60.7
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 2.6e-88 330.1 295 56.9
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 2.6e-88 330.1 278 60.1
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 2.6e-88 330.1 315 54.9
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 2.6e-88 330.1 275 60.0
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 2.6e-88 330.1 276 60.1
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 3.5e-88 329.7 278 59.4
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 4.5e-88 329.3 278 59.7
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 5.9e-88 328.9 278 59.0
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 5.9e-88 328.9 278 60.4
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 7.7e-88 328.6 292 57.9
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 1.0e-87 328.2 278 58.6
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 1.3e-87 327.8 278 58.6
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 1.3e-87 327.8 278 59.0
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 2.2e-87 327.0 272 59.9
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 2.9e-87 326.6 307 55.0
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 3.8e-87 326.2 290 57.9
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 3.8e-87 326.2 275 58.9
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 5.0e-87 325.9 272 59.9
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 8.5e-87 325.1 290 57.9
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 8.5e-87 325.1 290 57.9
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 8.5e-87 325.1 290 57.9
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 1.1e-86 324.7 265 62.3
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 1.1e-86 324.7 275 59.3
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 2.5e-86 323.6 267 61.0
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 4.2e-86 322.8 307 54.1
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 7.2e-86 322.0 275 59.3
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 9.4e-86 321.6 275 59.6
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 2.1e-85 320.5 278 58.3
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 4.7e-85 319.3 277 58.1
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 8.0e-85 318.5 254 61.8
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 1.8e-84 317.4 280 57.9
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 5.2e-84 315.8 314 51.0
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 1.5e-83 314.3 270 57.8
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 4.4e-83 312.8 283 55.1
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 7.5e-83 312.0 313 52.7
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 9.7e-83 311.6 290 56.6
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 2.2e-82 310.5 298 54.4
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 2.8e-82 310.1 286 57.3
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 8.3e-82 308.5 314 52.2
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 1.6e-80 304.3 287 55.7
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 3.2e-78 296.6 254 58.3
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 5.7e-75 285.8 288 53.5
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 1.6e-72 277.7 261 54.4
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 7.7e-72 275.4 197 67.5
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 3.3e-70 270.0 198 64.6
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 7.2e-70 268.9 195 67.7
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 9.5e-70 268.5 232 60.3
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 1.6e-69 267.7 195 66.7
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 1.6e-69 267.7 198 65.7
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 3.4e-67 260.0 277 51.3
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 5.7e-67 259.2 285 49.5
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 2.8e-66 256.9 278 50.0
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 1.8e-65 254.2 222 57.7
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 1.6e-64 251.1 222 56.8
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 1.6e-64 251.1 360 42.5
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 2.0e-64 250.8 198 62.6
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 2.3e-63 247.3 181 66.3
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 2.9e-63 246.9 185 67.0
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 2.6e-59 233.8 298 45.6
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 4.0e-52 209.9 194 55.7
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 3.5e-48 196.8 307 40.1
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 2.3e-47 194.1 134 71.6
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 4.3e-46 189.9 142 63.4
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 5.6e-46 189.5 308 40.3
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 2.0e-43 181.0 197 51.8
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 7.1e-41 172.6 176 50.0
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 1.3e-31 141.7 224 40.2
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 9.0e-28 129.0 188 42.0
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 4.3e-22 110.2 221 33.5
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 9.6e-22 109.0 77 67.5
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 2.1e-21 107.8 75 68.0
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 2.7e-16 90.9 184 33.2
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 7.9e-16 89.4 139 33.8
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 6.7e-15 86.3 94 46.8
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 3.3e-14 84.0 53 77.4
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 6.2e-13 79.7 50 76.0
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 6.9e-12 76.3 87 46.0
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 1.5e-11 75.1 74 50.0
Psat4g126360 Pisum sativum HOM05D001587 ORTHO05D037360 9.3e-09 65.9 55 56.4
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 1.3e-07 62.0 80 43.8


User provided reference genes

Program Settings