Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 8.6e-304 1046.2 535 100.0
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 5.8e-191 671.4 472 71.8
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 4.9e-182 641.7 456 68.6
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.1e-181 640.6 445 69.4
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 1.4e-181 640.2 456 68.0
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 1.9e-181 639.8 444 69.6
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 1.9e-181 639.8 480 66.5
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 3.2e-181 639.0 481 67.2
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 1.6e-180 636.7 446 68.8
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 2.7e-180 636.0 439 69.5
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 3.5e-180 635.6 447 67.8
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 4.6e-180 635.2 504 63.3
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 1.0e-179 634.0 445 69.4
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 1.3e-179 633.6 463 67.6
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.3e-179 633.6 445 68.8
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.3e-179 633.6 445 68.5
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 1.3e-179 633.6 431 71.0
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 1.7e-179 633.3 491 63.1
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 3.0e-179 632.5 456 67.5
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 3.9e-179 632.1 461 66.8
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 5.1e-179 631.7 438 69.2
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 5.1e-179 631.7 484 63.6
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 6.6e-179 631.3 491 62.9
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 6.6e-179 631.3 464 66.6
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 1.5e-178 630.2 511 63.2
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.5e-178 629.4 455 67.7
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 2.5e-178 629.4 437 69.6
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 3.3e-178 629.0 527 62.0
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 4.3e-178 628.6 510 62.9
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 4.3e-178 628.6 455 67.9
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 4.3e-178 628.6 501 64.3
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 7.3e-178 627.9 459 66.9
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 7.3e-178 627.9 521 61.8
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 9.6e-178 627.5 435 70.1
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 1.2e-177 627.1 480 66.0
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.2e-177 627.1 436 68.1
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 1.2e-177 627.1 513 63.4
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 1.6e-177 626.7 433 69.7
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 2.1e-177 626.3 446 67.7
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 2.8e-177 625.9 525 61.1
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 3.6e-177 625.5 491 64.0
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 3.6e-177 625.5 462 66.0
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 3.6e-177 625.5 446 67.5
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 3.6e-177 625.5 490 63.7
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 4.7e-177 625.2 431 68.7
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 4.7e-177 625.2 462 66.2
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 6.2e-177 624.8 457 67.6
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 8.1e-177 624.4 443 68.4
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 8.1e-177 624.4 472 64.8
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 8.1e-177 624.4 462 66.2
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 1.1e-176 624.0 431 69.6
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.8e-176 623.2 513 63.2
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.4e-176 622.9 430 70.0
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 3.1e-176 622.5 451 66.1
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 3.1e-176 622.5 435 68.3
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 5.2e-176 621.7 502 63.1
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 5.2e-176 621.7 515 61.4
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 6.9e-176 621.3 438 68.9
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 9.0e-176 620.9 431 70.3
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 9.0e-176 620.9 503 63.2
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 1.5e-175 620.2 435 68.0
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 1.5e-175 620.2 437 66.6
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.5e-175 620.2 437 68.6
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 1.5e-175 620.2 443 68.4
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 2.6e-175 619.4 479 64.7
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 2.6e-175 619.4 432 68.3
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 5.8e-175 618.2 502 63.9
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 7.6e-175 617.8 437 68.6
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 9.9e-175 617.5 519 61.7
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 1.3e-174 617.1 420 71.0
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 1.3e-174 617.1 479 64.5
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 1.3e-174 617.1 434 68.2
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 1.3e-174 617.1 513 61.4
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 1.7e-174 616.7 528 60.0
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 1.7e-174 616.7 437 66.8
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.7e-174 616.7 433 68.4
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 3.8e-174 615.5 418 71.5
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 6.4e-174 614.8 450 67.1
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 8.4e-174 614.4 418 71.5
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 1.1e-173 614.0 527 61.3
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 1.4e-173 613.6 437 65.9
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.9e-173 613.2 423 70.0
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 1.9e-173 613.2 478 63.6
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 3.2e-173 612.5 464 65.5
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 4.2e-173 612.1 450 67.6
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 5.4e-173 611.7 449 66.6
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 5.4e-173 611.7 449 66.6
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 2.1e-172 609.8 435 68.0
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 2.1e-172 609.8 435 67.8
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 4.6e-172 608.6 418 69.4
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 4.6e-172 608.6 420 69.3
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 7.8e-172 607.8 556 58.6
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 7.8e-172 607.8 419 69.5
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 1.7e-171 606.7 495 62.4
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.7e-171 606.7 420 68.8
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 1.5e-170 603.6 420 68.8
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 2.5e-170 602.8 420 68.8
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 2.5e-170 602.8 420 68.8
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 2.5e-170 602.8 420 69.0
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 4.3e-170 602.1 432 67.8
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 5.6e-170 601.7 418 68.9
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 5.6e-170 601.7 420 69.0
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 9.6e-170 600.9 528 58.5
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 3.6e-169 599.0 420 68.6
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 6.2e-169 598.2 418 68.9
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 6.2e-169 598.2 456 63.8
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 3.1e-168 595.9 523 60.2
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 3.1e-168 595.9 420 68.1
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 9.0e-168 594.3 418 68.4
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 1.5e-167 593.6 423 69.0
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 1.3e-166 590.5 450 65.6
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 9.3e-165 584.3 450 63.6
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 1.2e-164 583.9 475 62.1
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 2.1e-164 583.2 450 63.6
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.4e-160 569.7 403 69.2
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 9.9e-159 564.3 411 67.2
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 7.1e-157 558.1 432 63.9
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 7.1e-157 558.1 482 58.1
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 6.3e-145 518.5 363 69.1
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 1.2e-143 514.2 432 58.3
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 1.4e-141 507.3 431 61.3
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 7.9e-140 501.5 462 56.9
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 4.7e-132 475.7 322 71.4
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.7e-129 467.2 326 70.6
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 3.6e-124 449.5 407 57.7
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 6.1e-124 448.7 297 71.4
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 5.3e-120 435.6 426 56.1
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 2.0e-119 433.7 310 68.4
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.7e-118 430.6 322 64.6
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.5e-117 426.8 299 69.9
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 5.9e-111 405.6 269 71.0
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.7e-108 396.7 433 46.9
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.4e-107 394.4 299 65.6
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 6.5e-102 375.6 265 67.9
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 6.6e-86 322.4 434 40.8
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 8.0e-84 315.5 238 66.4
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 4.1e-72 276.6 358 43.0
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 6.6e-62 242.7 169 65.7
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.1e-45 188.7 184 52.2
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 6.9e-43 179.5 177 55.4
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.1e-40 172.2 127 63.0
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 8.7e-38 162.5 185 50.8
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 1.5e-37 161.8 125 62.4
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 1.8e-35 154.8 118 60.2
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.9e-30 137.1 131 51.1
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 4.5e-26 123.6 90 67.8
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 2.5e-24 117.9 90 58.9
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 1.2e-23 115.5 116 48.3
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 1.6e-23 115.2 111 49.5
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 6.1e-23 113.2 91 54.9
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 3.0e-22 110.9 89 53.9
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 1.5e-21 108.6 80 60.0
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 9.7e-21 105.9 77 58.4
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 6.9e-19 99.8 162 40.1
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 9.1e-19 99.4 258 29.5
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 5.9e-18 96.7 78 59.0
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 4.2e-16 90.5 88 47.7
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 4.2e-16 90.5 88 47.7
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 1.0e-14 85.9 61 65.6
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 1.5e-13 82.0 82 52.4
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 5.7e-13 80.1 160 33.8


User provided reference genes

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