Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 4.8e-222 774.2 402 100.0
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 3.6e-137 492.3 335 72.5
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 3.6e-137 492.3 335 72.5
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 2.2e-134 483.0 335 73.4
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.2e-132 477.2 344 68.0
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 6.0e-132 474.9 318 73.6
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.7e-131 473.4 344 68.0
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 3.9e-131 472.2 344 68.0
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 3.3e-130 469.2 329 70.5
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 9.5e-130 467.6 353 67.7
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 1.2e-129 467.2 329 69.6
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.8e-128 463.4 322 71.4
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.8e-128 463.4 322 71.4
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.3e-128 463.0 322 71.4
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 3.1e-128 462.6 325 70.2
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 3.1e-128 462.6 332 69.3
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 5.2e-128 461.8 342 69.0
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 6.8e-128 461.5 322 71.4
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 8.9e-128 461.1 342 67.8
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 8.9e-128 461.1 342 67.8
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 8.9e-128 461.1 328 68.6
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 1.2e-127 460.7 358 66.2
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 1.2e-127 460.7 322 69.9
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.5e-127 460.3 322 71.1
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 1.5e-127 460.3 322 69.6
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 1.5e-127 460.3 322 69.6
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 2.0e-127 459.9 342 67.8
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 2.6e-127 459.5 350 66.9
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 2.6e-127 459.5 325 69.5
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 2.6e-127 459.5 330 68.2
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 3.4e-127 459.1 322 70.5
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 3.4e-127 459.1 326 69.9
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 3.4e-127 459.1 322 70.5
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 4.4e-127 458.8 330 69.1
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 5.8e-127 458.4 350 66.0
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 5.8e-127 458.4 349 65.9
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 5.8e-127 458.4 349 66.2
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 5.8e-127 458.4 325 68.9
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 7.5e-127 458.0 349 66.2
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 7.5e-127 458.0 344 67.2
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 7.5e-127 458.0 319 70.8
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 9.8e-127 457.6 322 69.9
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 9.8e-127 457.6 322 70.8
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 1.3e-126 457.2 349 66.2
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 1.3e-126 457.2 349 66.2
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 1.3e-126 457.2 349 66.2
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 1.3e-126 457.2 322 70.2
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 1.3e-126 457.2 370 63.0
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.7e-126 456.8 344 66.9
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 1.7e-126 456.8 329 67.8
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 2.2e-126 456.4 337 66.5
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 2.2e-126 456.4 330 68.8
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 2.9e-126 456.1 345 66.7
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 2.9e-126 456.1 330 67.9
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 2.9e-126 456.1 350 64.6
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 3.7e-126 455.7 322 69.3
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 3.7e-126 455.7 333 67.6
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 3.7e-126 455.7 355 64.8
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 4.9e-126 455.3 321 69.2
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 4.9e-126 455.3 342 67.5
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 4.9e-126 455.3 327 68.2
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 4.9e-126 455.3 354 64.4
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 4.9e-126 455.3 358 64.2
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 6.4e-126 454.9 342 67.8
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 6.4e-126 454.9 336 68.5
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 6.4e-126 454.9 334 68.0
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 8.3e-126 454.5 354 65.3
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 8.3e-126 454.5 330 67.3
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 1.1e-125 454.1 321 69.2
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 1.1e-125 454.1 340 67.1
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.1e-125 454.1 315 69.8
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 1.4e-125 453.8 351 65.0
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 1.9e-125 453.4 319 69.9
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 1.9e-125 453.4 340 65.6
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 2.4e-125 453.0 333 67.3
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 2.4e-125 453.0 344 65.7
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 3.2e-125 452.6 322 69.9
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 3.2e-125 452.6 322 68.9
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 4.1e-125 452.2 348 65.2
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 5.4e-125 451.8 330 67.9
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 9.2e-125 451.1 336 67.3
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 9.2e-125 451.1 322 68.0
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 9.2e-125 451.1 322 68.0
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 9.2e-125 451.1 326 67.5
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 1.6e-124 450.3 353 64.0
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 2.1e-124 449.9 331 68.0
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 2.1e-124 449.9 318 68.2
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 2.7e-124 449.5 321 69.5
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.7e-124 449.5 339 67.6
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 3.5e-124 449.1 327 68.8
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 3.5e-124 449.1 350 65.7
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 3.5e-124 449.1 321 67.9
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 1.7e-123 446.8 321 67.9
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 3.0e-123 446.0 321 68.5
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 6.6e-123 444.9 377 61.8
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 6.6e-123 444.9 321 68.8
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 8.6e-123 444.5 321 68.2
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 1.9e-122 443.4 322 66.5
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 4.3e-122 442.2 351 64.7
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 5.6e-122 441.8 351 65.2
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.6e-121 440.3 388 60.6
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 4.7e-121 438.7 364 61.5
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 1.4e-120 437.2 334 65.3
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 4.0e-120 435.6 300 71.3
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 8.9e-120 434.5 349 64.2
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 5.8e-119 431.8 347 63.4
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 7.6e-119 431.4 322 67.1
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 1.7e-118 430.3 307 69.1
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 1.7e-118 430.3 294 71.8
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 1.5e-114 417.2 356 61.2
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 2.8e-113 412.9 281 71.5
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 6.2e-113 411.8 382 56.5
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.1e-112 411.0 329 63.8
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 1.5e-111 407.1 324 64.5
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 2.0e-111 406.8 322 62.7
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 5.8e-111 405.2 318 63.2
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 5.8e-111 405.2 354 60.2
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.4e-109 399.8 300 66.0
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 3.2e-109 399.4 363 59.5
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 1.3e-107 394.0 330 61.8
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 5.6e-106 388.7 273 69.2
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 1.3e-105 387.5 302 65.6
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.8e-104 383.6 410 52.7
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 8.4e-102 374.8 300 63.7
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 1.1e-101 374.4 267 68.9
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 1.4e-101 374.0 282 67.7
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 5.6e-98 362.1 344 57.3
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.9e-96 355.1 357 55.2
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.5e-95 354.0 238 76.5
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 7.6e-95 351.7 322 57.8
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 4.9e-94 349.0 254 66.5
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 6.0e-92 342.0 237 73.0
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 3.9e-91 339.3 248 71.0
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 9.6e-90 334.7 248 65.3
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 2.4e-88 330.1 237 67.9
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.6e-87 325.1 275 62.2
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.9e-86 323.2 369 49.3
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 3.2e-85 319.7 357 48.5
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 4.2e-85 319.3 232 69.8
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 4.2e-85 319.3 331 53.2
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.6e-76 290.8 344 48.5
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.1e-76 290.4 238 63.0
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.9e-69 267.3 192 69.3
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 1.1e-64 251.5 203 66.0
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.0e-62 245.0 281 49.8
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 7.4e-58 228.8 285 47.7
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 7.7e-55 218.8 161 66.5
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 1.0e-46 191.8 138 65.2
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 1.9e-45 187.6 128 69.5
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 4.2e-45 186.4 233 41.2
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 6.3e-41 172.6 125 66.4
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 1.1e-40 171.8 201 49.8
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 1.4e-40 171.4 207 48.3
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 4.5e-39 166.4 113 69.0
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.2e-31 141.7 355 33.5
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 1.0e-30 138.7 95 67.4
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.3e-30 138.3 103 61.2
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 4.0e-27 126.7 96 64.6
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 6.8e-27 125.9 76 76.3
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 2.0e-26 124.4 93 57.0
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.1e-24 118.6 89 60.7
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.8e-24 117.9 110 60.0
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 1.8e-24 117.9 88 58.0
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 2.8e-20 104.0 189 42.3
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 8.9e-19 99.0 78 53.8
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 2.7e-15 87.4 72 62.5
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 6.6e-14 82.8 72 47.2
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 1.2e-12 78.6 48 79.2
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 1.6e-12 78.2 57 64.9
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 1.6e-12 78.2 55 69.1
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 2.8e-12 77.4 69 47.8
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.3e-09 68.6 82 37.8
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 6.4e-09 66.2 78 53.8


User provided reference genes

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