Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0034s0078 Marchantia polymorpha HOM05D003618 ORTHO05D004302 1.9e-281 971.8 491 100.0
Mapoly0064s0074 Marchantia polymorpha HOM05D003618 ORTHO05D004302 1.0e-218 763.5 483 78.5
Peaxi162Scf00017g02915 Petunia axillaris HOM05D003618 ORTHO05D004302 1.5e-201 706.4 440 78.0
Atru.chr9.2476 Acer truncatum HOM05D003618 ORTHO05D004302 9.6e-201 703.7 461 74.8
Pp3c8_12290 Physcomitrium patens HOM05D003618 ORTHO05D004302 9.6e-201 703.7 475 74.9
QL10p011706 Quercus lobata HOM05D003618 ORTHO05D004302 2.1e-200 702.6 425 78.8
TAR629G0089 Trochodendron aralioides HOM05D003618 ORTHO05D004302 1.1e-199 700.3 450 76.0
CSS0045852 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 1.8e-199 699.5 450 75.8
Manes.06G104700 Manihot esculenta HOM05D003618 ORTHO05D004302 1.8e-199 699.5 442 76.7
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 3.1e-199 698.7 436 78.4
C09p08850 Brassica napus HOM05D003618 ORTHO05D004302 3.1e-199 698.7 451 76.1
BolC9t53797H Brassica oleracea HOM05D003618 ORTHO05D004302 3.1e-199 698.7 451 76.1
Pp3c24_8730 Physcomitrium patens HOM05D003618 ORTHO05D004302 3.1e-199 698.7 477 74.8
SEGI_37686 Sequoiadendron giganteum HOM05D003618 ORTHO05D004302 3.1e-199 698.7 466 74.9
Haze_07469 Corylus avellana HOM05D003618 ORTHO05D004302 4.0e-199 698.4 425 78.6
SMO348G0015 Selaginella moellendorffii HOM05D003618 ORTHO05D004302 4.0e-199 698.4 469 74.4
BcaC04g23393 Brassica carinata HOM05D003618 ORTHO05D004302 6.9e-199 697.6 451 76.1
CARHR276570 Cardamine hirsuta HOM05D003618 ORTHO05D004302 1.5e-198 696.4 429 78.3
AL8G39750 Arabidopsis lyrata HOM05D003618 ORTHO05D004302 2.0e-198 696.0 451 75.2
BcaB02g09693 Brassica carinata HOM05D003618 ORTHO05D004302 2.0e-198 696.0 473 73.4
A06p29560 Brassica napus HOM05D003618 ORTHO05D004302 2.6e-198 695.7 481 73.2
CiPaw.11G026400 Carya illinoinensis HOM05D003618 ORTHO05D004302 2.6e-198 695.7 425 78.1
Gohir.A09G171800 Gossypium hirsutum HOM05D003618 ORTHO05D004302 3.4e-198 695.3 430 78.4
BcaNung01381 Brassica carinata HOM05D003618 ORTHO05D004302 4.5e-198 694.9 482 72.4
Cfa019131 Carpinus fangiana HOM05D003618 ORTHO05D004302 4.5e-198 694.9 425 78.6
A09p07850 Brassica napus HOM05D003618 ORTHO05D004302 5.8e-198 694.5 485 72.2
Carub.0008s2351 Capsella rubella HOM05D003618 ORTHO05D004302 5.8e-198 694.5 452 75.0
Aqoxy3G02948 Aquilegia oxysepala HOM05D003618 ORTHO05D004302 1.0e-197 693.7 442 76.0
AT5G62790 Arabidopsis thaliana HOM05D003618 ORTHO05D004302 1.0e-197 693.7 452 75.4
Gohir.D09G167500 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.3e-197 693.3 430 77.9
GSVIVG01007752001 Vitis vinifera HOM05D003618 ORTHO05D004302 1.7e-197 693.0 480 72.3
Ciclev10020004m.g Citrus clementina HOM05D003618 ORTHO05D004302 2.9e-197 692.2 441 76.0
Gorai.006G189200 Gossypium raimondii HOM05D003618 ORTHO05D004302 3.8e-197 691.8 430 78.1
Nitab4.5_0007719g0010 Nicotiana tabacum HOM05D003618 ORTHO05D004302 3.8e-197 691.8 427 79.2
Os01g0106900 Oryza sativa ssp. japonica HOM05D003618 ORTHO05D004302 3.8e-197 691.8 429 78.8
Potri.012G080900 Populus trichocarpa HOM05D003618 ORTHO05D004302 6.5e-197 691.0 433 77.1
MSTRG.23128 Avicennia marina HOM05D003618 ORTHO05D004302 8.4e-197 690.6 471 73.0
Cc04_g14010 Coffea canephora HOM05D003618 ORTHO05D004302 8.4e-197 690.6 431 77.3
Manes.14G065900 Manihot esculenta HOM05D003618 ORTHO05D004302 8.4e-197 690.6 422 78.2
Nn4g22770 Nelumbo nucifera HOM05D003618 ORTHO05D004302 8.4e-197 690.6 443 76.3
Nitab4.5_0009783g0020 Nicotiana tabacum HOM05D003618 ORTHO05D004302 8.4e-197 690.6 440 77.5
SGA_v2.0_scaffold90G27940 Striga asiatica HOM05D003618 ORTHO05D004302 8.4e-197 690.6 465 73.5
Sabra15G0101400 Salix brachista HOM05D003618 ORTHO05D004302 1.1e-196 690.3 433 77.4
THA.LOC104818235 Tarenaya hassleriana HOM05D003618 ORTHO05D004302 1.9e-196 689.5 435 77.5
arahy.Tifrunner.gnm1.ann1.2KV8GB Arachis hypogaea HOM05D003618 ORTHO05D004302 2.5e-196 689.1 437 76.7
arahy.Tifrunner.gnm1.ann1.9FL7A6 Arachis hypogaea HOM05D003618 ORTHO05D004302 2.5e-196 689.1 437 76.7
Lalb_Chr13g0297811 Lupinus albus HOM05D003618 ORTHO05D004302 2.5e-196 689.1 451 74.9
Lalb_Chr07g0182731 Lupinus albus HOM05D003618 ORTHO05D004302 3.2e-196 688.7 452 75.2
Sp2g25950 Schrenkiella parvula HOM05D003618 ORTHO05D004302 3.2e-196 688.7 483 71.6
TAR622G0131 Trochodendron aralioides HOM05D003618 ORTHO05D004302 4.2e-196 688.3 436 76.8
CDE07G0194 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 5.5e-196 688.0 420 78.6
PSO170G5081 Papaver somniferum HOM05D003618 ORTHO05D004302 7.1e-196 687.6 443 76.3
Eucgr.B00316 Eucalyptus grandis HOM05D003618 ORTHO05D004302 9.3e-196 687.2 447 75.6
Thhalv10004122m.g Eutrema salsugineum HOM05D003618 ORTHO05D004302 9.3e-196 687.2 452 74.8
MD06G1174000 Malus domestica HOM05D003618 ORTHO05D004302 9.3e-196 687.2 448 75.4
SalBow5G0347 Salvia bowleyana HOM05D003618 ORTHO05D004302 9.3e-196 687.2 444 76.8
SalBow5G5681 Salvia bowleyana HOM05D003618 ORTHO05D004302 9.3e-196 687.2 444 76.8
TWI14G0558 Tripterygium wilfordii HOM05D003618 ORTHO05D004302 1.2e-195 686.8 434 75.8
Sed0011107 Sechium edule HOM05D003618 ORTHO05D004302 1.6e-195 686.4 413 80.6
Lsat_1_v5_gn_5_14440 Lactuca sativa HOM05D003618 ORTHO05D004302 2.1e-195 686.0 450 74.9
MD14G1180500 Malus domestica HOM05D003618 ORTHO05D004302 2.1e-195 686.0 448 75.4
Potri.015G076200 Populus trichocarpa HOM05D003618 ORTHO05D004302 2.1e-195 686.0 433 77.4
Sopen03g033440 Solanum pennellii HOM05D003618 ORTHO05D004302 2.1e-195 686.0 472 72.5
Ca_21917_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 2.7e-195 685.6 460 74.3
Solyc03g114340.3 Solanum lycopersicum HOM05D003618 ORTHO05D004302 2.7e-195 685.6 472 72.5
MSTRG.11450 Avicennia marina HOM05D003618 ORTHO05D004302 3.5e-195 685.3 443 75.4
Oeu035988.1 Olea europaea HOM05D003618 ORTHO05D004302 3.5e-195 685.3 430 77.4
RcHm_v2.0_Chr7g0193571 Rosa chinensis HOM05D003618 ORTHO05D004302 3.5e-195 685.3 447 74.7
Zm00001eb126690 Zea mays HOM05D003618 ORTHO05D004302 3.5e-195 685.3 421 79.1
BcaC01g02522 Brassica carinata HOM05D003618 ORTHO05D004302 4.6e-195 684.9 485 71.8
C03p63940 Brassica napus HOM05D003618 ORTHO05D004302 4.6e-195 684.9 485 71.8
BolC3t18648H Brassica oleracea HOM05D003618 ORTHO05D004302 4.6e-195 684.9 485 71.8
FvH4_5g05300 Fragaria vesca HOM05D003618 ORTHO05D004302 4.6e-195 684.9 447 74.5
FAN18G3775 Fragaria x ananassa HOM05D003618 ORTHO05D004302 4.6e-195 684.9 447 74.5
Oeu040829.1 Olea europaea HOM05D003618 ORTHO05D004302 4.6e-195 684.9 434 76.7
COL.COLO4_30036 Corchorus olitorius HOM05D003618 ORTHO05D004302 7.9e-195 684.1 438 76.0
ClCG06G017010 Citrullus lanatus HOM05D003618 ORTHO05D004302 1.0e-194 683.7 445 75.1
Migut.I00013 Erythranthe guttata HOM05D003618 ORTHO05D004302 1.0e-194 683.7 444 75.7
PGR083G1520 Punica granatum HOM05D003618 ORTHO05D004302 1.3e-194 683.3 465 74.4
BraA09t36436Z Brassica rapa HOM05D003618 ORTHO05D004302 1.8e-194 682.9 508 69.1
MELO3C026292.2 Cucumis melo HOM05D003618 ORTHO05D004302 1.8e-194 682.9 426 77.9
Sed0001158 Sechium edule HOM05D003618 ORTHO05D004302 1.8e-194 682.9 436 76.6
PSO455G0039 Papaver somniferum HOM05D003618 ORTHO05D004302 2.3e-194 682.6 444 74.8
ATR0730G147 Amborella trichopoda HOM05D003618 ORTHO05D004302 3.0e-194 682.2 473 72.7
Duzib205G1198 Durio zibethinus HOM05D003618 ORTHO05D004302 3.0e-194 682.2 430 77.0
TPR.G37486 Trifolium pratense HOM05D003618 ORTHO05D004302 3.0e-194 682.2 460 73.5
Lalb_Chr12g0201571 Lupinus albus HOM05D003618 ORTHO05D004302 3.9e-194 681.8 474 71.9
Medtr4g106870 Medicago truncatula HOM05D003618 ORTHO05D004302 3.9e-194 681.8 450 74.4
CsaV3_1G001500 Cucumis sativus L. HOM05D003618 ORTHO05D004302 8.7e-194 680.6 426 77.2
BraA06t25902Z Brassica rapa HOM05D003618 ORTHO05D004302 1.1e-193 680.2 501 70.1
Glyma.05G037500 Glycine max HOM05D003618 ORTHO05D004302 1.1e-193 680.2 444 73.9
Hund02742 Selenicereus undatus HOM05D003618 ORTHO05D004302 1.1e-193 680.2 450 75.1
vmacro19385 Vaccinium macrocarpon HOM05D003618 ORTHO05D004302 1.1e-193 680.2 456 74.1
Prupe.5G174000 Prunus persica HOM05D003618 ORTHO05D004302 1.5e-193 679.9 436 75.2
Lj5A124T67 Lonicera japonica HOM05D003618 ORTHO05D004302 3.3e-193 678.7 422 77.5
Phvul.003G200300 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 3.3e-193 678.7 449 74.4
VMungo1215G2328 Vigna mungo HOM05D003618 ORTHO05D004302 3.3e-193 678.7 450 74.2
Rhsim08G0171900 Rhododendron simsii HOM05D003618 ORTHO05D004302 4.3e-193 678.3 464 72.6
Lsat_1_v5_gn_4_75261 Lactuca sativa HOM05D003618 ORTHO05D004302 7.4e-193 677.6 455 73.2
Psat4g058000 Pisum sativum HOM05D003618 ORTHO05D004302 7.4e-193 677.6 437 76.4
Thecc.03G012400 Theobroma cacao HOM05D003618 ORTHO05D004302 9.7e-193 677.2 430 76.5
HPP92_004862 Vanilla planifolia HOM05D003618 ORTHO05D004302 1.3e-192 676.8 423 77.5
HanXRQChr05g0153451 Helianthus annuus HOM05D003618 ORTHO05D004302 2.2e-192 676.0 449 73.5
Lj4g0012807 Lotus japonicus HOM05D003618 ORTHO05D004302 2.2e-192 676.0 434 74.9
Glyma.17G089600 Glycine max HOM05D003618 ORTHO05D004302 1.4e-191 673.3 443 74.0
HanXRQChr09g0272201 Helianthus annuus HOM05D003618 ORTHO05D004302 1.4e-191 673.3 436 75.2
DCAR_026133 Daucus carota HOM05D003618 ORTHO05D004302 1.8e-191 672.9 418 77.5
unitig_0.g1445 Utricularia gibba HOM05D003618 ORTHO05D004302 1.8e-191 672.9 431 76.1
CANSAT80G1130 Cannabis sativa HOM05D003618 ORTHO05D004302 5.3e-191 671.4 463 71.1
Dinv20656 Davidia involucrata HOM05D003618 ORTHO05D004302 2.0e-190 669.5 443 74.0
ECA232G0993 Erigeron canadensis HOM05D003618 ORTHO05D004302 5.9e-190 667.9 435 75.6
Migut.I00014 Erythranthe guttata HOM05D003618 ORTHO05D004302 5.9e-190 667.9 418 78.0
Gohir.A11G001200 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.0e-189 667.2 451 73.6
FAN04G2056 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.2e-189 666.0 502 67.5
Gorai.007G001700 Gossypium raimondii HOM05D003618 ORTHO05D004302 2.9e-189 665.6 410 78.3
Lj9A449G48 Lonicera japonica HOM05D003618 ORTHO05D004302 2.9e-189 665.6 475 70.7
FAN13G0153 Fragaria x ananassa HOM05D003618 ORTHO05D004302 6.5e-189 664.5 489 68.1
FAN18G3061 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.9e-188 662.9 489 67.7
FAN08G0480 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.5e-188 662.5 489 68.1
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 4.2e-188 661.8 457 72.9
Aa31LG11G890 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.0e-186 657.1 451 71.4
AUR62030965 Chenopodium quinoa HOM05D003618 ORTHO05D004302 1.4e-186 656.8 434 73.3
MBI10_g14554_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 3.9e-186 655.2 461 72.9
MBI16_g32207_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 8.8e-186 654.1 431 75.2
Aa31LG11G900 Aethionema arabicum HOM05D003618 ORTHO05D004302 3.3e-185 652.1 451 71.4
CANSAT80G1364 Cannabis sativa HOM05D003618 ORTHO05D004302 2.8e-184 649.0 430 71.4
AUR62008212 Chenopodium quinoa HOM05D003618 ORTHO05D004302 3.1e-183 645.6 448 71.2
arahy.Tifrunner.gnm1.ann1.NJJ8BU Arachis hypogaea HOM05D003618 ORTHO05D004302 3.4e-182 642.1 441 70.7
arahy.Tifrunner.gnm1.ann1.5ZTX8H Arachis hypogaea HOM05D003618 ORTHO05D004302 4.5e-182 641.7 441 70.7
Lalb_Chr12g0209981 Lupinus albus HOM05D003618 ORTHO05D004302 1.7e-181 639.8 444 69.6
Ciclev10019836m.g Citrus clementina HOM05D003618 ORTHO05D004302 1.1e-180 637.1 457 68.5
Lj3g0025861 Lotus japonicus HOM05D003618 ORTHO05D004302 1.4e-180 636.7 442 69.9
Hund09436 Selenicereus undatus HOM05D003618 ORTHO05D004302 1.9e-180 636.3 436 68.6
CBR_g11924 Chara braunii HOM05D003618 ORTHO05D004302 1.2e-179 633.6 417 73.9
TPR.G31563 Trifolium pratense HOM05D003618 ORTHO05D004302 1.2e-179 633.6 421 72.2
MBI10_g41914_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.0e-178 630.6 461 71.1
Phvul.010G023000 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 3.9e-178 628.6 428 70.6
PGSC0003DMG400024503 Solanum tuberosum HOM05D003618 ORTHO05D004302 6.7e-178 627.9 461 69.4
Glyma.16G089000 Glycine max HOM05D003618 ORTHO05D004302 8.8e-178 627.5 444 69.1
Cpa.g.sc76.64 Carica papaya HOM05D003618 ORTHO05D004302 1.1e-177 627.1 384 79.7
Ca_23215_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 2.0e-177 626.3 440 69.8
Duzib068G0560 Durio zibethinus HOM05D003618 ORTHO05D004302 1.8e-175 619.8 379 78.6
VMungo0331G0859 Vigna mungo HOM05D003618 ORTHO05D004302 3.1e-175 619.0 434 69.6
Medtr8g012565 Medicago truncatula HOM05D003618 ORTHO05D004302 7.0e-175 617.8 449 67.9
Cre12.g546050 Chlamydomonas reinhardtii HOM05D003618 ORTHO05D004302 3.6e-171 605.5 450 66.7
SGA_v2.0_scaffold25G10843 Striga asiatica HOM05D003618 ORTHO05D004302 2.8e-168 595.9 427 69.1
CDE06G1773 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 2.2e-165 586.3 428 70.3
HanXRQChr16g0517311 Helianthus annuus HOM05D003618 ORTHO05D004302 8.8e-162 574.3 444 64.2
Aa31sc1732G20 Aethionema arabicum HOM05D003618 ORTHO05D004302 2.7e-158 562.8 379 72.3
Dinv02897 Davidia involucrata HOM05D003618 ORTHO05D004302 1.8e-154 550.1 327 81.3
PRCOL_00002139 Prasinoderma coloniale HOM05D003618 ORTHO05D004302 1.2e-153 547.4 422 64.2
CAN.G781.11 Capsicum annuum HOM05D003618 ORTHO05D004302 1.3e-152 543.9 322 81.1
Aa31sc1732G10 Aethionema arabicum HOM05D003618 ORTHO05D004302 5.4e-151 538.5 338 76.9
HanXRQChr05g0156211 Helianthus annuus HOM05D003618 ORTHO05D004302 1.1e-148 530.8 340 76.5
AagrBONN_evm.TU.Sc2ySwM_228.1199 Anthoceros agrestis HOM05D003618 ORTHO05D004302 1.3e-141 507.3 342 78.4
Sabra12G0057700 Salix brachista HOM05D003618 ORTHO05D004302 1.9e-135 486.9 407 64.6
MCO15G646 Micromonas commoda HOM05D003618 ORTHO05D004302 7.8e-134 481.5 356 65.4
Cc00_g09910 Coffea canephora HOM05D003618 ORTHO05D004302 4.1e-127 459.1 303 73.3
Sc12g0005340 Simmondsia chinensis HOM05D003618 ORTHO05D004302 1.5e-108 397.5 266 75.2
Psat4g204400 Pisum sativum HOM05D003618 ORTHO05D004302 2.1e-94 350.5 271 65.3
Actinidia33067 Actinidia chinensis HOM05D003618 ORTHO05D004302 3.8e-88 329.7 243 71.6
Zm00001eb334380 Zea mays HOM05D003618 ORTHO05D004302 3.9e-85 319.7 192 78.6
Gohir.D11G000766 Gossypium hirsutum HOM05D003618 ORTHO05D004302 6.2e-83 312.4 178 81.5
Sc12g0005330 Simmondsia chinensis HOM05D003618 ORTHO05D004302 7.2e-79 298.9 181 74.6
FvH4_4g01210 Fragaria vesca HOM05D003618 ORTHO05D004302 3.4e-73 280.0 263 58.2
Zm00001eb334370 Zea mays HOM05D003618 ORTHO05D004302 4.6e-70 269.6 180 75.0
Gohir.D11G000832 Gossypium hirsutum HOM05D003618 ORTHO05D004302 4.2e-63 246.5 174 70.1
Cc04_g14070 Coffea canephora HOM05D003618 ORTHO05D004302 3.9e-61 240.0 223 59.2
VMungo0647G0692 Vigna mungo HOM05D003618 ORTHO05D004302 7.4e-60 235.7 164 73.2
Lsat_1_v5_gn_0_46101 Lactuca sativa HOM05D003618 ORTHO05D004302 2.4e-58 230.7 357 37.3
Hund09437 Selenicereus undatus HOM05D003618 ORTHO05D004302 8.8e-53 212.2 369 39.3
FvH4_3g27741 Fragaria vesca HOM05D003618 ORTHO05D004302 5.3e-50 203.0 147 71.4
FvH4_1g09716 Fragaria vesca HOM05D003618 ORTHO05D004302 2.5e-39 167.5 153 61.4
FvH4_1g09717 Fragaria vesca HOM05D003618 ORTHO05D004302 8.0e-30 136.0 71 87.3
DCAR_016639 Daucus carota HOM05D003618 ORTHO05D003669 2.0e-25 121.3 75 80.0
FAN09G3822 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.2e-19 101.3 75 61.3
RcHm_v2.0_Chr1g0360281 Rosa chinensis HOM05D003618 ORTHO05D004302 1.9e-18 98.2 69 69.6
RcHm_v2.0_Chr2g0151191 Rosa chinensis HOM05D001812 ORTHO05D004302 4.6e-17 93.6 73 63.0
Cc00_g21160 Coffea canephora HOM05D003618 ORTHO05D153345 1.2e-12 79.0 47 74.5
Cc00_g09880 Coffea canephora HOM05D003618 ORTHO05D004302 3.7e-11 73.9 37 89.2
Hma1.2p1_0549F.1_g176800 Hydrangea macrophylla HOM05D003618 ORTHO05D004302 4.9e-11 73.6 49 77.6
SGA_v2.0_scaffold45G17201 Striga asiatica HOM05D003618 ORTHO05D404764 2.1e-09 68.2 148 39.9
CSS0000585 Camellia sinensis var. sinensis HOM05D016198 ORTHO05D113077 1.6e-06 58.5 36 77.8
TAR636G0941 Trochodendron aralioides HOM05D002305 ORTHO05D415090 4.7e-06 57.0 55 54.5


User provided reference genes

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