Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 0.0e+00 1961.8 935 100.0
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1106.3 975 56.4
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1102.8 976 55.9
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1099.7 978 55.1
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1097.4 978 54.6
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1097.0 976 55.5
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1096.3 957 55.9
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1094.7 973 55.6
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1094.7 979 55.4
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1090.1 977 54.8
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1089.7 979 55.5
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 0.0e+00 1089.7 939 56.1
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1088.9 994 54.4
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1088.2 978 54.5
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1088.2 978 55.1
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1087.8 970 55.3
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1085.9 980 55.3
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1082.8 958 54.4
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1082.4 984 54.4
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1082.0 979 54.2
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1081.2 980 53.7
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1080.9 979 54.9
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1080.5 981 54.2
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1080.1 978 54.7
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1079.7 978 54.4
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1079.3 981 55.0
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1078.2 980 54.9
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1077.4 973 55.0
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1077.0 974 55.0
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1076.2 970 53.6
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1076.2 978 54.4
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 6.4e-312 1074.7 969 54.5
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 6.4e-312 1074.3 983 54.6
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 6.4e-312 1074.3 979 53.9
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 6.4e-312 1073.5 950 55.2
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.3e-311 1072.8 970 54.3
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 1.9e-311 1072.4 970 53.8
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 2.6e-311 1072.0 972 54.4
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 3.2e-311 1071.6 977 54.5
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 4.5e-311 1071.2 981 53.7
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 5.8e-311 1070.8 949 54.9
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 7.7e-311 1070.5 986 53.9
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 7.7e-311 1070.5 969 54.1
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 9.6e-311 1070.1 975 53.9
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 2.2e-310 1068.9 978 53.7
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 3.7e-310 1068.1 963 54.6
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 4.9e-310 1067.8 970 54.3
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 4.9e-310 1067.8 981 54.2
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 1.4e-309 1066.2 978 53.7
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 2.4e-309 1065.4 975 53.7
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 2.4e-309 1065.4 965 54.2
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 2.4e-309 1065.4 975 53.6
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 3.1e-309 1065.1 982 53.8
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 5.3e-309 1064.3 984 54.2
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 7.0e-309 1063.9 981 53.9
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 7.0e-309 1063.9 975 53.1
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 1.6e-308 1062.8 983 53.2
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 1.6e-308 1062.8 965 54.4
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 2.7e-308 1062.0 950 55.2
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 2.7e-308 1062.0 950 55.2
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 3.5e-308 1061.6 978 54.1
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 4.5e-308 1061.2 978 53.5
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 4.5e-308 1061.2 967 54.2
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 4.5e-308 1061.2 973 54.0
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 5.9e-308 1060.8 978 53.0
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 7.7e-308 1060.4 967 54.4
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 1.3e-307 1059.7 978 53.4
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 1.7e-307 1059.3 954 54.2
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 3.8e-307 1058.1 983 54.1
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 6.5e-307 1057.4 956 54.3
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 1.1e-306 1056.6 945 56.1
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 1.1e-306 1056.6 980 53.2
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 1.5e-306 1056.2 976 54.0
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 1.9e-306 1055.8 979 53.0
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 1.9e-306 1055.8 977 54.0
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 3.2e-306 1055.0 950 55.1
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 4.2e-306 1054.7 956 54.6
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 9.4e-306 1053.5 980 53.2
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 1.2e-305 1053.1 979 52.8
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 3.6e-305 1051.6 947 54.8
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 3.6e-305 1051.6 950 54.6
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 8.0e-305 1050.4 930 55.5
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 8.0e-305 1050.4 978 53.5
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 1.0e-304 1050.0 950 54.5
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 1.0e-304 1050.0 951 53.9
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 1.4e-304 1049.7 974 53.8
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 3.0e-304 1048.5 985 52.9
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 8.8e-304 1047.0 974 53.8
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 8.8e-304 1047.0 950 54.4
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 2.0e-303 1045.8 963 54.2
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 4.4e-303 1044.6 941 54.8
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 5.7e-303 1044.3 961 53.5
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 9.8e-303 1043.5 979 53.1
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 2.8e-302 1042.0 941 54.6
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 6.3e-302 1040.8 954 53.8
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 8.3e-302 1040.4 978 53.0
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 1.1e-301 1040.0 981 53.3
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 1.8e-301 1039.3 955 54.5
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 2.4e-301 1038.9 939 54.6
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 3.1e-301 1038.5 974 53.0
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 3.1e-301 1038.5 983 53.1
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 2.0e-300 1035.8 951 55.1
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 2.7e-300 1035.4 937 54.3
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 5.9e-300 1034.2 939 54.5
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 2.3e-299 1032.3 974 53.4
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 6.6e-299 1030.8 941 54.2
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 8.6e-299 1030.4 974 52.6
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 4.2e-298 1028.1 980 52.4
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 3.6e-297 1025.0 950 53.8
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 6.8e-296 1020.8 965 53.1
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 2.6e-295 1018.8 982 51.9
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 4.4e-295 1018.1 975 52.7
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 8.0e-289 997.3 994 50.8
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 3.1e-288 995.3 978 50.9
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 4.1e-285 984.9 977 50.1
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 4.1e-285 984.9 882 55.1
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 3.0e-283 978.8 938 52.3
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 4.7e-281 971.5 876 54.2
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 4.0e-280 968.4 950 52.2
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 2.6e-279 965.7 938 52.3
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 5.8e-279 964.5 766 58.6
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 2.2e-278 962.6 1015 49.5
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 4.9e-278 961.4 951 50.6
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 6.0e-276 954.5 950 51.7
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 7.6e-271 937.6 856 53.9
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 1.0e-267 927.2 1009 48.4
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 2.4e-264 916.0 831 53.8
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 3.1e-264 915.6 861 52.1
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 3.5e-252 875.5 785 53.8
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 8.1e-249 864.4 848 51.4
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 1.8e-243 846.7 785 53.6
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 1.5e-239 833.6 770 54.3
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 4.3e-226 788.9 779 51.1
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.4e-213 747.3 671 54.7
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 7.5e-194 681.8 678 50.1
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 5.6e-157 559.3 558 51.1
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 5.4e-152 542.7 415 61.2
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 3.8e-89 334.0 292 54.1
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 3.4e-77 294.3 358 44.4
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 2.7e-74 284.6 210 61.4
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 2.8e-68 264.6 643 31.1
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 4.1e-67 260.8 217 55.3
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.0e-62 246.1 184 60.9
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.1e-59 236.1 160 66.2
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 4.1e-59 234.2 373 39.4
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 5.4e-59 233.8 274 46.0
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.3e-52 212.6 901 23.1
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 1.9e-48 198.7 144 61.1
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 4.3e-48 197.6 207 48.8
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 2.2e-44 185.3 175 49.7
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 3.8e-36 157.9 402 28.4
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 1.5e-29 136.0 410 28.5
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 1.7e-28 132.5 90 64.4
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 2.5e-24 118.6 185 37.3
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 8.1e-23 113.6 466 27.0
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 8.1e-23 113.6 85 61.2
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 4.0e-22 111.3 151 43.7
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 2.7e-18 98.6 107 47.7
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.1e-14 86.7 86 51.2
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 5.8e-13 80.9 136 31.6
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 5.8e-13 80.9 101 40.6
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 8.4e-12 77.0 146 34.2
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 2.1e-10 72.4 113 33.6
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 3.5e-10 71.6 115 38.3
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 6.7e-09 67.4 42 69.0
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 8.7e-09 67.0 85 45.9


User provided reference genes

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