Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 4.7e-135 484.6 250 100.0
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 1.8e-49 200.3 197 47.2
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 4.6e-42 175.6 199 42.7
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 1.8e-41 173.7 210 40.5
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 6.7e-41 171.8 195 44.6
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 8.8e-41 171.4 207 39.1
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 8.8e-41 171.4 207 39.1
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 1.1e-40 171.0 208 39.9
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 2.0e-40 170.2 223 41.3
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 3.3e-40 169.5 201 38.8
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 3.3e-40 169.5 205 38.5
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 3.3e-40 169.5 205 38.5
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 3.3e-40 169.5 186 43.0
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 4.4e-40 169.1 212 41.5
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 1.3e-39 167.5 205 39.0
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 1.7e-39 167.2 208 39.9
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 1.7e-39 167.2 209 41.1
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 2.2e-39 166.8 197 41.1
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 6.3e-39 165.2 232 35.3
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 6.3e-39 165.2 191 40.8
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 8.2e-39 164.9 213 37.1
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.4e-38 164.1 213 37.1
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 1.4e-38 164.1 186 41.9
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 1.4e-38 164.1 186 41.9
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 3.1e-38 162.9 229 36.2
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 3.1e-38 162.9 229 36.2
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 4.1e-38 162.5 189 41.3
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 4.1e-38 162.5 229 35.8
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 5.3e-38 162.2 212 39.6
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 6.9e-38 161.8 229 35.8
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 6.9e-38 161.8 229 35.8
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 6.9e-38 161.8 196 40.8
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 1.5e-37 160.6 206 40.8
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 2.0e-37 160.2 186 41.9
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 2.0e-37 160.2 186 39.2
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 2.0e-37 160.2 186 40.3
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 2.6e-37 159.8 210 39.0
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 4.5e-37 159.1 212 36.8
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 7.7e-37 158.3 211 37.0
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 1.3e-36 157.5 210 37.6
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 1.3e-36 157.5 210 37.6
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.3e-36 157.5 192 39.6
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 1.3e-36 157.5 222 36.5
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 1.7e-36 157.1 210 36.2
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 1.7e-36 157.1 192 38.0
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 1.7e-36 157.1 200 36.5
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 2.9e-36 156.4 201 38.3
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 3.8e-36 156.0 233 33.9
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 3.8e-36 156.0 198 39.4
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 5.0e-36 155.6 202 36.6
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 8.5e-36 154.8 188 39.9
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 8.5e-36 154.8 188 39.9
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 1.1e-35 154.5 217 35.9
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 1.9e-35 153.7 221 35.7
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 5.5e-35 152.1 216 35.2
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 5.5e-35 152.1 199 36.7
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 2.1e-34 150.2 201 36.8
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 2.1e-34 150.2 201 36.8
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 2.7e-34 149.8 223 35.4
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 4.7e-34 149.1 221 34.8
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 4.7e-34 149.1 201 35.3
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 6.1e-34 148.7 195 37.4
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 6.1e-34 148.7 177 40.1
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 6.1e-34 148.7 200 36.5
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 6.1e-34 148.7 167 42.5
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 6.1e-34 148.7 194 39.2
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 7.9e-34 148.3 201 36.3
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 7.9e-34 148.3 186 39.2
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 1.0e-33 147.9 201 35.8
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 2.3e-33 146.7 200 36.5
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 3.9e-33 146.0 195 35.4
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 8.8e-33 144.8 183 39.9
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 1.5e-32 144.1 201 35.3
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 4.4e-32 142.5 152 43.4
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 9.7e-32 141.4 152 44.1
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 2.2e-31 140.2 175 42.3
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 3.7e-31 139.4 178 37.1
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.1e-30 137.9 220 34.5
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 5.3e-30 135.6 166 41.6
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.6e-29 133.3 175 37.7
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 1.7e-28 130.6 134 44.8
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 5.0e-28 129.0 193 33.2
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 6.5e-28 128.6 165 40.0
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 6.5e-28 128.6 149 43.6
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 3.2e-27 126.3 179 36.3
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 3.2e-27 126.3 163 38.7
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 4.2e-27 125.9 204 33.3
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.2e-26 124.4 228 34.2
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 1.6e-26 124.0 187 32.6
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 2.1e-26 123.6 200 31.5
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 2.7e-26 123.2 211 32.7
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 2.7e-26 123.2 200 33.5
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 6.1e-26 122.1 201 34.3
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 3.0e-25 119.8 179 37.4
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 5.2e-25 119.0 187 34.8
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 5.2e-25 119.0 228 32.9
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.2e-24 117.9 197 33.0
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 1.2e-24 117.9 193 34.7
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 1.5e-24 117.5 202 32.2
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 4.4e-24 115.9 176 35.2
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.7e-23 114.0 183 35.5
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 1.7e-23 114.0 187 32.6
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 2.2e-23 113.6 215 30.7
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 2.2e-23 113.6 221 33.5
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 3.7e-23 112.8 150 35.3
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 3.7e-23 112.8 146 39.0
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 8.2e-23 111.7 150 35.3
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 8.2e-23 111.7 149 35.6
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 1.1e-22 111.3 183 32.8
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 1.1e-22 111.3 206 28.6
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 1.4e-22 110.9 202 33.2
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 1.4e-22 110.9 203 29.1
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 5.3e-22 109.0 184 33.7
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 7.0e-22 108.6 183 32.2
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 9.1e-22 108.2 158 34.2
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 1.2e-21 107.8 204 30.4
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 1.6e-21 107.5 149 34.2
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 2.9e-20 103.2 143 33.6
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 5.0e-20 102.4 189 29.1
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 6.5e-20 102.1 190 33.2
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 1.1e-19 101.3 143 37.1
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 1.5e-19 100.9 228 27.6
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 1.9e-19 100.5 183 33.3
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 1.9e-19 100.5 194 30.4
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 1.9e-19 100.5 188 32.4
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.5e-19 100.1 200 32.0
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 2.5e-19 100.1 143 32.9
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 5.5e-19 99.0 193 32.1
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 2.1e-18 97.1 193 32.1
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.7e-18 96.7 194 32.0
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 6.1e-18 95.5 180 32.2
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 1.0e-17 94.7 196 30.1
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 2.3e-17 93.6 196 28.6
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 8.8e-17 91.7 177 28.2
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 8.8e-17 91.7 170 31.8
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.5e-16 90.9 192 27.1
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 2.0e-16 90.5 173 32.9
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 2.6e-16 90.1 168 29.8
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.4e-16 89.7 181 32.0
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 4.4e-16 89.4 193 25.4
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 8.3e-15 85.1 185 28.6
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.1e-14 84.7 199 28.1
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 1.2e-13 81.3 121 38.0
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.7e-13 80.1 150 34.0
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 3.5e-13 79.7 81 40.7
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.0e-12 78.2 72 47.2
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.9e-12 76.6 181 26.5
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 5.0e-12 75.9 187 25.1
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 3.2e-11 73.2 105 35.2
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 4.2e-11 72.8 101 35.6
AagrBONN_evm.TU.Sc2ySwM_362.234 Anthoceros agrestis HOM05D019249 ORTHO05D019657 3.0e-09 66.6 196 24.0
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 6.8e-09 65.5 184 26.1
Cfa001774 Carpinus fangiana HOM05D005700 ORTHO05D007035 2.6e-08 63.5 217 25.8
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 9.8e-08 61.6 185 24.3
Pp3c1_32760 Physcomitrium patens HOM05D019249 ORTHO05D019657 1.1e-06 58.2 254 22.0
QL08p053081 Quercus lobata HOM05D005700 ORTHO05D007035 1.4e-06 57.8 219 26.0
MCO16G481 Micromonas commoda HOM05D019249 ORTHO05D019657 1.8e-06 57.4 215 25.1
CiPaw.01G265100 Carya illinoinensis HOM05D005700 ORTHO05D007035 2.4e-06 57.0 215 25.1
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 2.4e-06 57.0 94 28.7


User provided reference genes

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