Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0031s0075 Marchantia polymorpha HOM05D002709 ORTHO05D002914 0.0e+00 1097.0 558 100.0
Mapoly0021s0100 Marchantia polymorpha HOM05D002709 ORTHO05D002914 2.7e-18 97.8 194 33.0
Mapoly0031s0076 Marchantia polymorpha HOM05D002709 ORTHO05D002914 7.5e-16 89.7 298 28.2
SMO367G0040 Selaginella moellendorffii HOM05D002709 ORTHO05D002914 8.3e-15 86.3 202 30.7
Sabra06G0155400 Salix brachista HOM05D002709 ORTHO05D002914 2.7e-13 81.3 190 31.6
SMO356G0362 Selaginella moellendorffii HOM05D002709 ORTHO05D002914 2.7e-13 81.3 177 32.8
Mapoly0031s0074 Marchantia polymorpha HOM05D002709 ORTHO05D002914 1.7e-12 78.6 169 32.5
Pp3c5_20560 Physcomitrium patens HOM05D002709 ORTHO05D002914 2.3e-12 78.2 210 29.0
CDE02G2384 Ceratophyllum demersum HOM05D002709 ORTHO05D002914 3.8e-12 77.4 440 23.9
Mapoly0021s0101 Marchantia polymorpha HOM05D002709 ORTHO05D002914 5.0e-12 77.0 188 30.3
Sabra16G0069500 Salix brachista HOM05D002709 ORTHO05D002914 1.5e-11 75.5 190 29.5
Atru.chr8.7 Acer truncatum HOM05D002709 ORTHO05D002914 1.9e-11 75.1 210 28.6
Pp3c6_8660 Physcomitrium patens HOM05D002709 ORTHO05D002914 1.9e-11 75.1 210 28.1
Potri.006G202100 Populus trichocarpa HOM05D002709 ORTHO05D002914 1.9e-11 75.1 190 30.0
Atru.chr12.829 Acer truncatum HOM05D002709 ORTHO05D002914 5.6e-11 73.6 193 26.9
Ciclev10019669m.g Citrus clementina HOM05D002709 ORTHO05D002914 5.6e-11 73.6 191 28.8
Sopen01g032710 Solanum pennellii HOM05D002709 ORTHO05D002914 7.3e-11 73.2 192 30.2
ATR0829G155 Amborella trichopoda HOM05D002709 ORTHO05D002914 9.5e-11 72.8 195 26.7
CARHR005700 Cardamine hirsuta HOM05D002709 ORTHO05D002914 2.1e-10 71.6 198 30.8
CiPaw.13G149800 Carya illinoinensis HOM05D002709 ORTHO05D002914 2.1e-10 71.6 193 29.0
Cc02_g26300 Coffea canephora HOM05D002709 ORTHO05D002914 2.1e-10 71.6 192 30.2
PGSC0003DMG400001791 Solanum tuberosum HOM05D002709 ORTHO05D002914 2.1e-10 71.6 192 31.2
Aa31LG5G5710 Aethionema arabicum HOM05D002709 ORTHO05D002914 2.8e-10 71.2 179 31.3
Os04g0599300 Oryza sativa ssp. japonica HOM05D002709 ORTHO05D002914 2.8e-10 71.2 201 27.4
GSVIVG01011330001 Vitis vinifera HOM05D002709 ORTHO05D002914 2.8e-10 71.2 191 27.7
CAN.G700.27 Capsicum annuum HOM05D002709 ORTHO05D002914 3.6e-10 70.9 197 29.9
Ca_18230_v3 Cicer arietinum L. HOM05D002709 ORTHO05D002914 3.6e-10 70.9 190 31.1
CsaV3_2G011050 Cucumis sativus L. HOM05D002709 ORTHO05D002914 4.7e-10 70.5 223 26.9
MD02G1240500 Malus domestica HOM05D002709 ORTHO05D002914 4.7e-10 70.5 195 30.8
Potri.016G068500 Populus trichocarpa HOM05D002709 ORTHO05D002914 4.7e-10 70.5 190 28.9
Solyc01g081100.3 Solanum lycopersicum HOM05D002709 ORTHO05D002914 4.7e-10 70.5 192 30.2
CDE12G0280 Ceratophyllum demersum HOM05D002709 ORTHO05D002914 6.1e-10 70.1 177 29.9
MELO3C020370.2 Cucumis melo HOM05D002709 ORTHO05D002914 6.1e-10 70.1 224 26.8
Dinv43981 Davidia involucrata HOM05D002709 ORTHO05D002914 6.1e-10 70.1 192 29.7
Migut.N01685 Erythranthe guttata HOM05D002709 ORTHO05D002914 6.1e-10 70.1 195 28.7
Nitab4.5_0000592g0300 Nicotiana tabacum HOM05D002709 ORTHO05D002914 8.0e-10 69.7 182 31.3
Peaxi162Scf00592g00446 Petunia axillaris HOM05D002709 ORTHO05D002914 8.0e-10 69.7 168 32.7
ClCG06G008120 Citrullus lanatus HOM05D002709 ORTHO05D002914 1.4e-09 68.9 200 30.0
TPR.G23841 Trifolium pratense HOM05D002709 ORTHO05D002914 1.4e-09 68.9 191 28.8
Aqoxy3G02033 Aquilegia oxysepala HOM05D002709 ORTHO05D002914 1.8e-09 68.6 194 27.3
CSS0026946 Camellia sinensis var. sinensis HOM05D002709 ORTHO05D002914 1.8e-09 68.6 187 26.2
CSS0031913 Camellia sinensis var. sinensis HOM05D002709 ORTHO05D002914 1.8e-09 68.6 189 25.9
Carub.0001s0553 Capsella rubella HOM05D002709 ORTHO05D002914 1.8e-09 68.6 198 29.8
Dinv43535 Davidia involucrata HOM05D002709 ORTHO05D002914 1.8e-09 68.6 193 31.6
QL04p052179 Quercus lobata HOM05D002709 ORTHO05D002914 1.8e-09 68.6 191 29.3
SEGI_18151 Sequoiadendron giganteum HOM05D002709 ORTHO05D002914 1.8e-09 68.6 207 25.6
TWI14G0450 Tripterygium wilfordii HOM05D002709 ORTHO05D002914 1.8e-09 68.6 205 29.3
CSS0035517 Camellia sinensis var. sinensis HOM05D002709 ORTHO05D002914 2.3e-09 68.2 187 26.2
DCAR_029561 Daucus carota HOM05D002709 ORTHO05D002914 2.3e-09 68.2 192 29.2
Nitab4.5_0000050g0090 Nicotiana tabacum HOM05D002709 ORTHO05D002914 2.3e-09 68.2 191 28.8
Sc26g0002000 Simmondsia chinensis HOM05D002709 ORTHO05D002914 3.0e-09 67.8 200 28.5
Thecc.10G002900 Theobroma cacao HOM05D002709 ORTHO05D002914 3.0e-09 67.8 190 28.9
Zm00001eb251650 Zea mays HOM05D002709 ORTHO05D002914 3.0e-09 67.8 173 31.2
Glyma.08G089100 Glycine max HOM05D002709 ORTHO05D002914 4.0e-09 67.4 191 28.3
Nitab4.5_0004412g0070 Nicotiana tabacum HOM05D002709 ORTHO05D002914 4.0e-09 67.4 168 31.5
Atru.chr6.2608 Acer truncatum HOM05D002709 ORTHO05D002914 6.8e-09 66.6 191 27.7
Haze_15815 Corylus avellana HOM05D002709 ORTHO05D002914 6.8e-09 66.6 189 29.1
Gohir.A06G158500 Gossypium hirsutum HOM05D002709 ORTHO05D002914 6.8e-09 66.6 190 25.8
Medtr4g094762 Medicago truncatula HOM05D002709 ORTHO05D002914 6.8e-09 66.6 187 26.7
CiPaw.13G149600 Carya illinoinensis HOM05D002709 ORTHO05D002914 8.9e-09 66.2 191 28.8
CDE01G0783 Ceratophyllum demersum HOM05D002709 ORTHO05D002914 8.9e-09 66.2 101 38.6
CDE11G0990 Ceratophyllum demersum HOM05D002709 ORTHO05D002914 8.9e-09 66.2 194 28.4
Gohir.D06G164400 Gossypium hirsutum HOM05D002709 ORTHO05D002914 8.9e-09 66.2 190 26.8
Gorai.010G191800 Gossypium raimondii HOM05D002709 ORTHO05D002914 8.9e-09 66.2 190 26.8
Lj4g0026815 Lotus japonicus HOM05D002709 ORTHO05D002914 8.9e-09 66.2 177 31.6
Psat7g087680 Pisum sativum HOM05D002709 ORTHO05D002914 8.9e-09 66.2 187 26.2
AL1G16130 Arabidopsis lyrata HOM05D002709 ORTHO05D002914 1.2e-08 65.9 198 29.3
BcaC05g24299 Brassica carinata HOM05D002709 ORTHO05D002914 1.2e-08 65.9 198 27.3
C05p04490 Brassica napus HOM05D002709 ORTHO05D002914 1.2e-08 65.9 198 27.3
BolC5t29220H Brassica oleracea HOM05D002709 ORTHO05D002914 1.2e-08 65.9 198 27.3
Glyma.05G134400 Glycine max HOM05D002709 ORTHO05D002914 1.2e-08 65.9 191 27.7
Nn3g19279 Nelumbo nucifera HOM05D002709 ORTHO05D002914 1.2e-08 65.9 195 27.7
Nitab4.5_0004594g0050 Nicotiana tabacum HOM05D002709 ORTHO05D002914 1.2e-08 65.9 172 29.7
SalBow4G1996 Salvia bowleyana HOM05D002709 ORTHO05D002914 1.2e-08 65.9 195 29.2
PGSC0003DMG400036434 Solanum tuberosum HOM05D002709 ORTHO05D002914 1.2e-08 65.9 190 24.7
Aa31LG1G7190 Aethionema arabicum HOM05D002709 ORTHO05D002914 1.5e-08 65.5 199 27.6
CANSAT25G2627 Cannabis sativa HOM05D002709 ORTHO05D002914 1.5e-08 65.5 194 29.9
Thhalv10009992m.g Eutrema salsugineum HOM05D002709 ORTHO05D002914 1.5e-08 65.5 198 26.8
Medtr4g094758 Medicago truncatula HOM05D002709 ORTHO05D002914 1.5e-08 65.5 185 28.1
SalBow4G0249 Salvia bowleyana HOM05D002709 ORTHO05D002914 1.5e-08 65.5 195 29.2
Sed0026777 Sechium edule HOM05D002709 ORTHO05D002914 1.5e-08 65.5 200 28.5
TWI59G0602 Tripterygium wilfordii HOM05D002709 ORTHO05D002914 1.5e-08 65.5 207 30.4
BraA10t42748Z Brassica rapa HOM05D002709 ORTHO05D002914 2.0e-08 65.1 198 27.3
ECA248G1803 Erigeron canadensis HOM05D002709 ORTHO05D002914 2.0e-08 65.1 201 27.4
Peaxi162Scf00592g00445 Petunia axillaris HOM05D002709 ORTHO05D002914 2.0e-08 65.1 186 26.9
Prupe.2G097200 Prunus persica HOM05D002709 ORTHO05D002914 2.0e-08 65.1 192 30.2
A10p04800 Brassica napus HOM05D002709 ORTHO05D002914 2.6e-08 64.7 198 26.8
FvH4_7g07050 Fragaria vesca HOM05D002709 ORTHO05D002914 2.6e-08 64.7 194 26.8
HanXRQChr11g0344001 Helianthus annuus HOM05D002709 ORTHO05D002914 2.6e-08 64.7 197 26.4
Mapoly0021s0102 Marchantia polymorpha HOM05D002709 ORTHO05D002914 2.6e-08 64.7 161 27.3
RcHm_v2.0_Chr1g0337011 Rosa chinensis HOM05D002709 ORTHO05D002914 2.6e-08 64.7 194 26.8
AT1G06170 Arabidopsis thaliana HOM05D002709 ORTHO05D002914 3.4e-08 64.3 196 29.1
Glyma.16G090900 Glycine max HOM05D002709 ORTHO05D002914 3.4e-08 64.3 186 28.0
Lsat_1_v5_gn_1_85520 Lactuca sativa HOM05D002709 ORTHO05D002914 3.4e-08 64.3 196 26.0
MD07G1076400 Malus domestica HOM05D002709 ORTHO05D002914 3.4e-08 64.3 173 31.2
Nn1g02001 Nelumbo nucifera HOM05D002709 ORTHO05D002914 3.4e-08 64.3 199 26.6
Oeu060684.1 Olea europaea HOM05D002709 ORTHO05D002914 3.4e-08 64.3 197 27.9
Oeu060686.1 Olea europaea HOM05D002709 ORTHO05D002914 3.4e-08 64.3 193 28.0
Manes.07G013000 Manihot esculenta HOM05D002709 ORTHO05D002914 4.4e-08 63.9 193 25.9
Sp1g04980 Schrenkiella parvula HOM05D002709 ORTHO05D002914 4.4e-08 63.9 198 26.3
Sp4g13710 Schrenkiella parvula HOM05D002709 ORTHO05D002914 4.4e-08 63.9 201 27.9
Sed0003196 Sechium edule HOM05D002709 ORTHO05D002914 4.4e-08 63.9 202 28.2
AL4G26440 Arabidopsis lyrata HOM05D002709 ORTHO05D002914 5.7e-08 63.5 205 29.8
BcaB06g28432 Brassica carinata HOM05D002709 ORTHO05D002914 5.7e-08 63.5 193 30.1
Thhalv10016616m.g Eutrema salsugineum HOM05D002709 ORTHO05D002914 5.7e-08 63.5 201 28.9
Lj7A558T39 Lonicera japonica HOM05D002709 ORTHO05D002914 5.7e-08 63.5 172 28.5
Lj4g0001908 Lotus japonicus HOM05D002709 ORTHO05D002914 5.7e-08 63.5 191 29.8
Manes.10G132400 Manihot esculenta HOM05D002709 ORTHO05D002914 5.7e-08 63.5 201 24.4
COL.COLO4_19335 Corchorus olitorius HOM05D002709 ORTHO05D002914 7.5e-08 63.2 190 26.8
Duzib128G1731 Durio zibethinus HOM05D002709 ORTHO05D002914 7.5e-08 63.2 190 25.3
Gohir.D06G164500 Gossypium hirsutum HOM05D002709 ORTHO05D002914 7.5e-08 63.2 191 26.7
Lalb_Chr07g0188211 Lupinus albus HOM05D002709 ORTHO05D002914 7.5e-08 63.2 191 27.7
Phvul.002G187950 Phaseolus vulgaris HOM05D002709 ORTHO05D002914 7.5e-08 63.2 191 27.2
MBI04_g21140_MAGBIO Magnolia biondii HOM05D002709 ORTHO05D002914 9.8e-08 62.8 184 29.3
Phvul.003G281300 Phaseolus vulgaris HOM05D002709 ORTHO05D002914 9.8e-08 62.8 189 27.5
TWI23G0406 Tripterygium wilfordii HOM05D002709 ORTHO05D002914 9.8e-08 62.8 188 28.7
BcaB02g06818 Brassica carinata HOM05D002709 ORTHO05D002914 1.3e-07 62.4 198 26.8
BolC4t23452H Brassica oleracea HOM05D002709 ORTHO05D002914 1.3e-07 62.4 200 31.5
C04p60730 Brassica napus HOM05D002709 ORTHO05D002914 1.7e-07 62.0 203 29.1
Haze_15816 Corylus avellana HOM05D002709 ORTHO05D002914 1.7e-07 62.0 160 33.8
Oeu060682.1 Olea europaea HOM05D002709 ORTHO05D002914 1.7e-07 62.0 193 26.9
VMungo0251G0109 Vigna mungo HOM05D002709 ORTHO05D002914 1.7e-07 62.0 192 28.1
Solyc01g081090.2 Solanum lycopersicum HOM05D002709 ORTHO05D002914 2.2e-07 61.6 190 23.7
Ca_18228_v3 Cicer arietinum L. HOM05D002709 ORTHO05D002914 2.9e-07 61.2 82 42.7
PSO063G5588 Papaver somniferum HOM05D002709 ORTHO05D002914 2.9e-07 61.2 200 27.0
BcaB03g15789 Brassica carinata HOM05D002709 ORTHO05D002914 3.7e-07 60.8 195 26.7
BcaB06g28516 Brassica carinata HOM05D002709 ORTHO05D002914 3.7e-07 60.8 207 29.0
BolC4t27562H Brassica oleracea HOM05D002709 ORTHO05D002914 3.7e-07 60.8 207 29.0
BraA04t17924Z Brassica rapa HOM05D002709 ORTHO05D002914 3.7e-07 60.8 201 27.9
Gorai.010G191900 Gossypium raimondii HOM05D002709 ORTHO05D002914 3.7e-07 60.8 190 25.3
Gorai.012G081100 Gossypium raimondii HOM05D002709 ORTHO05D002914 3.7e-07 60.8 192 26.0
PSO782G1354 Papaver somniferum HOM05D002709 ORTHO05D002914 3.7e-07 60.8 199 27.1
PGR042G1208 Punica granatum HOM05D002709 ORTHO05D002914 3.7e-07 60.8 176 33.5
arahy.Tifrunner.gnm1.ann1.ALCT10 Arachis hypogaea HOM05D002709 ORTHO05D002914 4.9e-07 60.5 82 43.9
arahy.Tifrunner.gnm1.ann1.UPIP6Z Arachis hypogaea HOM05D002709 ORTHO05D002914 4.9e-07 60.5 82 43.9
EL10Ac3g06800 Beta vulgaris HOM05D002709 ORTHO05D002914 4.9e-07 60.5 194 25.8
C04p19190 Brassica napus HOM05D002709 ORTHO05D002914 4.9e-07 60.5 197 27.4
Carub.0004s1249 Capsella rubella HOM05D002709 ORTHO05D002914 4.9e-07 60.5 208 26.0
Eucgr.E04247 Eucalyptus grandis HOM05D002709 ORTHO05D002914 4.9e-07 60.5 181 29.3
BcaC02g11210 Brassica carinata HOM05D002709 ORTHO05D002914 6.4e-07 60.1 197 26.9
A04p24050 Brassica napus HOM05D002709 ORTHO05D002914 6.4e-07 60.1 203 28.1
BcaB06g28515 Brassica carinata HOM05D002709 ORTHO05D002914 8.3e-07 59.7 203 28.6
DCAR_025008 Daucus carota HOM05D002709 ORTHO05D002914 8.3e-07 59.7 187 28.3
Lsat_1_v5_gn_4_40321 Lactuca sativa HOM05D002709 ORTHO05D002914 8.3e-07 59.7 207 26.6
C04p60720 Brassica napus HOM05D002709 ORTHO05D002914 1.1e-06 59.3 203 28.6
CARHR124810 Cardamine hirsuta HOM05D002709 ORTHO05D002914 1.1e-06 59.3 207 26.1
Hma1.2p1_0420F.1_g149790 Hydrangea macrophylla HOM05D002709 ORTHO05D002914 1.1e-06 59.3 86 41.9
unitig_85.g27218 Utricularia gibba HOM05D002709 ORTHO05D002914 1.1e-06 59.3 194 27.8
VMungo0251G2843 Vigna mungo HOM05D002709 ORTHO05D002914 1.1e-06 59.3 189 27.0
MSTRG.21566 Avicennia marina HOM05D001604 ORTHO05D001432 1.4e-06 58.9 88 40.9
BraA05t20370Z Brassica rapa HOM05D002709 ORTHO05D002914 1.4e-06 58.9 198 28.3
Gohir.A06G158600 Gossypium hirsutum HOM05D002709 ORTHO05D002914 1.4e-06 58.9 190 24.7
Actinidia31749 Actinidia chinensis HOM05D002709 ORTHO05D002914 1.8e-06 58.5 194 25.3
CDE12G0719 Ceratophyllum demersum HOM05D001604 ORTHO05D001432 1.8e-06 58.5 213 24.9
Lj7A558T38 Lonicera japonica HOM05D002709 ORTHO05D002914 1.8e-06 58.5 197 27.4
BraA04t17925Z Brassica rapa HOM05D002709 ORTHO05D002914 2.4e-06 58.2 203 27.6
PGR042G3537 Punica granatum HOM05D002709 ORTHO05D002914 2.4e-06 58.2 201 25.9
vmacro13577 Vaccinium macrocarpon HOM05D002709 ORTHO05D002914 2.4e-06 58.2 201 25.4
ECA234G2181 Erigeron canadensis HOM05D002709 ORTHO05D002914 3.2e-06 57.8 214 28.0
Migut.N01686 Erythranthe guttata HOM05D002709 ORTHO05D002914 3.2e-06 57.8 190 27.9
SGA_v2.0_scaffold4G02211 Striga asiatica HOM05D002709 ORTHO05D002914 3.2e-06 57.8 206 26.7
Lj4g0027774 Lotus japonicus HOM05D002709 ORTHO05D002914 4.1e-06 57.4 81 44.4
MD02G1240400 Malus domestica HOM05D002709 ORTHO05D002914 4.1e-06 57.4 172 29.1
Os01g0293100 Oryza sativa ssp. japonica HOM05D002709 ORTHO05D002914 4.1e-06 57.4 211 24.2
SalBow4G1080 Salvia bowleyana HOM05D002709 ORTHO05D002914 4.1e-06 57.4 187 27.8
Sopen01g032700 Solanum pennellii HOM05D001900 ORTHO05D009822 4.1e-06 57.4 170 24.7
AT2G31220 Arabidopsis thaliana HOM05D002709 ORTHO05D002914 5.4e-06 57.0 207 28.0
CARHR124820 Cardamine hirsuta HOM05D002709 ORTHO05D002914 5.4e-06 57.0 203 26.6
AUR62032672 Chenopodium quinoa HOM05D002709 ORTHO05D002914 5.4e-06 57.0 199 25.1
FAN03G2441 Fragaria x ananassa HOM05D002709 ORTHO05D002914 5.4e-06 57.0 191 29.8
Lj4g0018416 Lotus japonicus HOM05D002709 ORTHO05D002914 5.4e-06 57.0 82 41.5
SalBow4G3022 Salvia bowleyana HOM05D002709 ORTHO05D002914 5.4e-06 57.0 187 27.8
AL4G26410 Arabidopsis lyrata HOM05D002709 ORTHO05D002914 7.0e-06 56.6 212 26.4
AUR62014519 Chenopodium quinoa HOM05D002709 ORTHO05D002914 7.0e-06 56.6 62 51.6
AUR62038015 Chenopodium quinoa HOM05D002709 ORTHO05D002914 7.0e-06 56.6 62 51.6
SalBow4G0764 Salvia bowleyana HOM05D002709 ORTHO05D002914 7.0e-06 56.6 189 28.6
SalBow4G2369 Salvia bowleyana HOM05D002709 ORTHO05D002914 7.0e-06 56.6 189 28.6
EL10Ac1g00672 Beta vulgaris HOM05D002709 ORTHO05D002914 9.2e-06 56.2 207 26.6
A05p14420 Brassica napus HOM05D002709 ORTHO05D002914 9.2e-06 56.2 202 29.2
MD07G1076500 Malus domestica HOM05D002709 ORTHO05D002914 9.2e-06 56.2 170 29.4
Phvul.011G086200 Phaseolus vulgaris HOM05D004091 ORTHO05D004581 9.2e-06 56.2 220 26.4
SMO347G0063 Selaginella moellendorffii HOM05D000567 ORTHO05D000323 9.2e-06 56.2 166 27.7
VMungo1127G1339 Vigna mungo HOM05D004091 ORTHO05D004581 9.2e-06 56.2 177 28.2


User provided reference genes

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