Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 5.5e-297 1023.5 494 100.0
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 9.0e-215 750.4 472 75.0
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 1.9e-212 742.7 436 77.3
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 4.2e-212 741.5 465 74.2
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 7.2e-212 740.7 469 74.6
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 6.1e-211 737.6 463 72.8
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 2.3e-210 735.7 449 74.6
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 3.9e-210 734.9 470 73.6
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 5.1e-210 734.6 469 73.3
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 6.7e-210 734.2 468 73.9
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 1.5e-209 733.0 468 72.4
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.9e-209 732.6 473 72.7
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 2.5e-209 732.3 476 73.1
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 4.3e-209 731.5 472 73.1
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 9.7e-209 730.3 464 73.5
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 9.7e-209 730.3 458 72.5
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 1.6e-208 729.6 471 72.4
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 1.6e-208 729.6 469 72.5
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 2.2e-208 729.2 469 72.7
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.8e-208 728.8 472 72.7
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 4.8e-208 728.0 471 71.8
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 4.8e-208 728.0 475 72.2
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 6.3e-208 727.6 486 70.8
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 6.3e-208 727.6 468 73.7
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 8.2e-208 727.2 473 70.6
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 1.1e-207 726.9 479 71.6
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 1.1e-207 726.9 435 77.2
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 1.1e-207 726.9 445 75.1
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 1.1e-207 726.9 481 71.7
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 1.8e-207 726.1 435 75.6
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 2.4e-207 725.7 482 72.2
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 3.1e-207 725.3 471 71.3
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 3.1e-207 725.3 468 73.3
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 3.1e-207 725.3 475 72.4
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 3.1e-207 725.3 445 76.0
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 3.1e-207 725.3 472 72.5
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 3.1e-207 725.3 476 71.6
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 5.3e-207 724.5 445 76.2
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 5.3e-207 724.5 468 72.6
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 5.3e-207 724.5 464 72.4
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 6.9e-207 724.2 468 72.2
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 6.9e-207 724.2 476 72.1
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 6.9e-207 724.2 472 72.2
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 1.2e-206 723.4 472 72.0
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 1.5e-206 723.0 470 72.3
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 1.5e-206 723.0 468 71.6
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 1.5e-206 723.0 449 74.4
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 2.0e-206 722.6 445 75.3
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 2.0e-206 722.6 472 73.5
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 2.0e-206 722.6 472 71.6
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 2.6e-206 722.2 468 72.6
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 3.4e-206 721.8 435 76.6
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 3.4e-206 721.8 470 72.3
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 3.4e-206 721.8 468 71.4
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 3.4e-206 721.8 476 71.2
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 4.5e-206 721.5 468 71.4
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 1.0e-205 720.3 468 72.9
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 1.3e-205 719.9 470 71.3
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 1.3e-205 719.9 470 71.9
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 1.3e-205 719.9 470 71.9
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 1.3e-205 719.9 468 72.4
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 1.7e-205 719.5 468 71.4
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 1.7e-205 719.5 468 71.4
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 1.7e-205 719.5 466 73.0
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 2.2e-205 719.2 470 71.9
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 2.2e-205 719.2 468 71.8
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 2.2e-205 719.2 467 72.2
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 2.2e-205 719.2 435 75.6
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 2.9e-205 718.8 469 71.2
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 2.9e-205 718.8 449 74.4
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 2.9e-205 718.8 443 74.7
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 6.5e-205 717.6 430 76.7
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 1.1e-204 716.8 469 71.9
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 1.1e-204 716.8 472 72.5
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 1.9e-204 716.1 480 70.8
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 1.9e-204 716.1 468 71.2
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 1.9e-204 716.1 473 72.7
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 1.9e-204 716.1 469 71.6
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 1.9e-204 716.1 481 70.5
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 2.5e-204 715.7 473 71.9
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 4.2e-204 714.9 471 70.7
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 4.2e-204 714.9 435 75.6
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 7.2e-204 714.1 469 71.9
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 9.4e-204 713.8 483 70.6
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 1.2e-203 713.4 471 71.1
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 2.1e-203 712.6 442 74.4
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 4.6e-203 711.4 432 75.5
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 7.9e-203 710.7 470 70.0
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 7.9e-203 710.7 435 73.6
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 1.0e-202 710.3 455 73.4
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 1.0e-202 710.3 469 71.2
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 1.4e-202 709.9 435 74.0
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 2.3e-202 709.1 475 69.9
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 3.0e-202 708.8 467 71.5
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.0e-201 706.1 436 75.0
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 2.6e-201 705.7 483 69.2
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 3.3e-201 705.3 468 70.1
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 6.3e-200 701.0 472 69.1
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 2.0e-198 696.0 475 68.2
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 4.5e-198 694.9 479 69.7
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 5.0e-197 691.4 462 71.0
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 1.6e-195 686.4 495 66.3
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 6.7e-194 681.0 464 70.3
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.6e-193 679.1 451 71.6
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 8.5e-189 664.1 467 67.2
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 7.2e-188 661.0 435 70.1
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 4.1e-183 645.2 448 69.4
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 4.5e-182 641.7 469 66.1
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 8.0e-179 630.9 515 62.1
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 4.7e-171 605.1 376 73.4
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 6.1e-171 604.7 460 65.0
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 1.7e-168 596.7 485 60.2
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 5.6e-164 581.6 454 63.4
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.2e-160 569.7 351 74.4
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 1.6e-158 563.5 441 62.8
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.0e-157 560.8 351 73.8
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 1.5e-148 530.4 449 58.1
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 4.4e-137 492.3 304 73.0
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 6.4e-136 488.4 470 53.4
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 1.9e-135 486.9 406 59.6
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 4.3e-132 475.7 431 53.6
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 1.2e-131 474.2 338 69.2
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 1.2e-131 474.2 304 71.7
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 1.4e-122 444.1 278 73.4
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 6.9e-122 441.8 275 73.5
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 4.8e-115 419.1 304 65.8
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 2.5e-108 396.7 251 73.3
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 3.4e-105 386.3 300 62.3
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 7.2e-95 352.1 224 74.1
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 7.2e-95 352.1 224 74.1
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 1.5e-89 334.3 208 75.5
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 3.5e-81 306.6 411 43.8
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 3.9e-77 293.1 197 70.6
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 9.7e-76 288.5 436 42.0
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 2.0e-65 254.2 400 41.0
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 4.7e-62 243.0 134 76.9
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 1.9e-55 221.1 155 65.8
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 1.2e-54 218.4 155 65.2
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 4.0e-53 213.4 172 58.7
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 4.0e-53 213.4 166 60.2
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 4.4e-44 183.3 99 74.7
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 4.4e-44 183.3 99 74.7
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 2.0e-41 174.5 112 70.5
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 4.6e-41 173.3 105 76.2
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 2.8e-30 137.5 97 62.9
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 2.4e-26 124.4 89 62.9
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.0e-24 119.0 89 66.3
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 3.9e-24 117.1 141 45.4
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 1.2e-22 112.1 69 69.6
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 1.6e-22 111.7 77 64.9
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 1.8e-21 108.2 66 72.7
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 1.1e-18 99.0 56 78.6
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 5.3e-13 80.1 61 67.2
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 5.3e-13 80.1 45 75.6
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 1.6e-09 68.6 68 54.4
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.6e-09 68.6 68 54.4
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 3.9e-08 63.9 34 76.5
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 2.5e-07 61.2 64 50.0
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 1.3e-06 58.9 77 49.4


User provided reference genes

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