Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 2.8e-129 465.3 236 100.0
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 2.3e-67 259.6 217 62.7
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 3.6e-60 235.7 202 57.9
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 3.6e-60 235.7 224 53.6
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 4.7e-60 235.3 202 57.4
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 1.4e-59 233.8 203 57.1
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 4.4e-58 228.8 221 52.9
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 7.5e-58 228.0 221 53.8
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 7.0e-56 221.5 207 53.6
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 1.0e-54 217.6 202 53.0
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 2.2e-54 216.5 222 49.1
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 5.0e-54 215.3 222 49.5
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 5.0e-54 215.3 211 53.6
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 6.5e-54 214.9 211 51.2
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 2.5e-53 213.0 223 51.6
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 4.2e-53 212.2 204 52.0
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 1.6e-52 210.3 221 50.7
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 2.1e-52 209.9 221 50.2
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 4.7e-52 208.8 222 48.2
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.0e-51 207.6 223 49.3
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 2.3e-51 206.5 221 48.4
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 5.2e-51 205.3 223 47.1
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 8.8e-51 204.5 222 47.3
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 8.8e-51 204.5 222 49.1
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.5e-50 203.8 212 50.5
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 3.4e-50 202.6 222 48.6
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 3.4e-50 202.6 222 48.6
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 4.4e-50 202.2 209 52.6
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 2.2e-49 199.9 202 49.0
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 2.8e-49 199.5 217 47.9
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 6.3e-49 198.4 202 52.5
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 8.3e-49 198.0 221 48.0
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 8.3e-49 198.0 226 46.9
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 1.1e-48 197.6 220 49.1
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 1.8e-48 196.8 246 43.5
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 3.1e-48 196.1 204 52.5
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 5.4e-48 195.3 218 47.2
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 7.0e-48 194.9 222 46.4
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 9.1e-48 194.5 202 49.5
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 1.2e-47 194.1 215 47.0
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 1.2e-47 194.1 204 52.5
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 1.6e-47 193.7 204 52.9
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 3.5e-47 192.6 215 46.5
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 7.7e-47 191.4 204 51.0
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 1.0e-46 191.0 168 57.1
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.0e-46 191.0 213 50.7
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 2.2e-46 189.9 204 50.5
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 3.8e-46 189.1 204 51.0
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 3.8e-46 189.1 218 45.4
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 1.1e-45 187.6 230 43.9
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.9e-45 186.8 230 45.2
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 3.2e-45 186.0 233 42.5
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 3.2e-45 186.0 215 47.0
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 4.2e-45 185.7 204 49.5
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 5.5e-45 185.3 221 46.2
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 7.2e-45 184.9 222 47.3
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 7.2e-45 184.9 223 48.0
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 9.4e-45 184.5 223 48.0
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 9.4e-45 184.5 223 48.0
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 9.4e-45 184.5 216 46.8
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 1.2e-44 184.1 226 46.0
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 2.7e-44 183.0 216 46.3
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 3.6e-44 182.6 226 42.5
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 3.6e-44 182.6 188 50.0
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 8.0e-44 181.4 221 47.1
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 3.0e-43 179.5 218 43.1
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 4.0e-43 179.1 215 45.1
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 4.0e-43 179.1 222 44.1
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 6.8e-43 178.3 228 43.9
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 8.8e-43 177.9 229 44.5
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 8.8e-43 177.9 228 44.3
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 2.0e-42 176.8 227 44.5
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 3.4e-42 176.0 203 46.3
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 4.4e-42 175.6 232 42.7
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 5.7e-42 175.3 219 45.2
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 7.5e-42 174.9 220 44.5
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.3e-41 174.1 221 43.4
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 2.2e-41 173.3 241 42.7
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 2.8e-41 172.9 215 43.7
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 8.3e-41 171.4 207 46.4
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 1.8e-40 170.2 177 53.1
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 1.8e-40 170.2 213 42.7
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 1.8e-40 170.2 203 44.3
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 2.4e-40 169.9 225 41.3
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 3.1e-40 169.5 221 44.3
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 3.1e-40 169.5 198 47.5
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 5.4e-40 168.7 205 47.8
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 7.0e-40 168.3 216 47.2
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 9.1e-40 167.9 222 43.7
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 1.6e-39 167.2 189 47.1
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 4.5e-39 165.6 177 49.2
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 4.5e-39 165.6 202 44.6
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 7.7e-39 164.9 249 39.0
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 1.0e-38 164.5 183 48.6
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.7e-38 163.7 177 50.3
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 6.6e-38 161.8 264 37.5
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 2.5e-37 159.8 303 35.0
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 5.6e-37 158.7 223 42.2
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 9.5e-37 157.9 177 47.5
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 4.7e-36 155.6 213 40.4
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 8.0e-36 154.8 232 40.5
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 4.0e-35 152.5 154 53.2
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 8.9e-35 151.4 204 43.1
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 1.5e-34 150.6 164 51.8
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.4e-32 143.3 189 43.4
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 4.1e-32 142.5 153 49.7
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 3.9e-30 136.0 210 39.0
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.9e-29 133.7 253 36.8
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 7.3e-29 131.7 184 42.9
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 4.7e-28 129.0 161 47.2
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 1.4e-27 127.5 148 48.0
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 5.2e-27 125.6 247 35.6
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 2.0e-26 123.6 104 58.7
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 5.8e-26 122.1 111 51.4
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 7.5e-26 121.7 164 42.7
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 4.9e-25 119.0 214 35.0
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 8.3e-25 118.2 247 34.8
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 8.3e-25 118.2 115 53.9
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 8.3e-25 118.2 132 44.7
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 9.2e-24 114.8 150 46.0
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 2.3e-22 110.2 227 33.5
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.8e-20 103.2 145 42.8
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 1.3e-17 94.4 166 38.6
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.3e-17 94.4 94 51.1
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 6.4e-17 92.0 212 31.1
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 8.6e-14 81.6 202 30.2
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.3e-13 79.7 92 47.8
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.6e-12 77.4 79 49.4
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 2.1e-12 77.0 68 54.4
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 1.4e-11 74.3 137 31.4
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 1.8e-11 73.9 87 49.4
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 5.2e-11 72.4 102 40.2
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 6.8e-11 72.0 207 28.5
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 3.7e-09 66.2 48 60.4
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 1.4e-08 64.3 219 26.0
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 9.2e-08 61.6 85 44.7
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 1.2e-07 61.2 85 44.7
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 4.6e-07 59.3 163 31.9
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 5.1e-06 55.8 45 48.9


User provided reference genes

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