Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0029s0104 Marchantia polymorpha HOM05D006951 ORTHO05D008594 9.5e-77 290.0 140 100.0
SEGI_23238 Sequoiadendron giganteum HOM05D006951 ORTHO05D008594 4.8e-36 154.8 134 53.7
Pp3c1_27510 Physcomitrium patens HOM05D006951 ORTHO05D008594 9.9e-34 147.1 132 49.2
Nitab4.5_0024714g0010 Nicotiana tabacum HOM05D006951 ORTHO05D008594 1.7e-33 146.4 132 56.1
Dinv37325 Davidia involucrata HOM05D006951 ORTHO05D008594 2.2e-33 146.0 113 61.9
Solyc01g097140.4 Solanum lycopersicum HOM05D006951 ORTHO05D008594 2.9e-33 145.6 118 58.5
Sopen01g040820 Solanum pennellii HOM05D006951 ORTHO05D008594 2.9e-33 145.6 118 58.5
PGSC0003DMG400027515 Solanum tuberosum HOM05D006951 ORTHO05D008594 2.9e-33 145.6 118 58.5
Lalb_Chr25g0288931 Lupinus albus HOM05D006951 ORTHO05D008594 3.8e-33 145.2 133 53.4
Nitab4.5_0002247g0030 Nicotiana tabacum HOM05D006951 ORTHO05D008594 4.9e-33 144.8 129 56.6
Hma1.2p1_0828F.1_g225170 Hydrangea macrophylla HOM05D006951 ORTHO05D008594 6.4e-33 144.4 118 56.8
Peaxi162Scf00282g00715 Petunia axillaris HOM05D006951 ORTHO05D008594 6.4e-33 144.4 129 55.8
Potri.006G122700 Populus trichocarpa HOM05D006951 ORTHO05D008594 6.4e-33 144.4 114 57.9
Sabra06G0096900 Salix brachista HOM05D006951 ORTHO05D008594 8.4e-33 144.1 114 57.0
CDE08G0062 Ceratophyllum demersum HOM05D006951 ORTHO05D008594 1.1e-32 143.7 115 56.5
MBI07_g19430_MAGBIO Magnolia biondii HOM05D006951 ORTHO05D008594 1.1e-32 143.7 122 55.7
arahy.Tifrunner.gnm1.ann1.GEWQ29 Arachis hypogaea HOM05D006951 ORTHO05D008594 1.4e-32 143.3 115 58.3
arahy.Tifrunner.gnm1.ann1.U3DP0D Arachis hypogaea HOM05D006951 ORTHO05D008594 1.4e-32 143.3 115 58.3
CAN.G134.74 Capsicum annuum HOM05D006951 ORTHO05D008594 1.9e-32 142.9 118 56.8
THA.LOC104816356 Tarenaya hassleriana HOM05D006951 ORTHO05D008594 1.9e-32 142.9 107 62.6
Actinidia26657 Actinidia chinensis HOM05D006951 ORTHO05D008594 3.2e-32 142.1 114 59.6
AagrBONN_evm.TU.Sc2ySwM_368.1351 Anthoceros agrestis HOM05D006951 ORTHO05D008594 3.2e-32 142.1 123 49.6
COL.COLO4_26935 Corchorus olitorius HOM05D006951 ORTHO05D008594 3.2e-32 142.1 108 59.3
Medtr7g102310 Medicago truncatula HOM05D006951 ORTHO05D008594 4.2e-32 141.7 114 58.8
Cc06_g04390 Coffea canephora HOM05D006951 ORTHO05D008594 5.4e-32 141.4 114 57.9
VMungo1383G2370 Vigna mungo HOM05D006951 ORTHO05D008594 5.4e-32 141.4 125 54.4
Aqoxy2G01713 Aquilegia oxysepala HOM05D006951 ORTHO05D008594 7.1e-32 141.0 114 57.0
Ca_08913_v3 Cicer arietinum L. HOM05D006951 ORTHO05D008594 7.1e-32 141.0 121 56.2
Haze_20517 Corylus avellana HOM05D006951 ORTHO05D008594 7.1e-32 141.0 121 53.7
Glyma.19G185200 Glycine max HOM05D006951 ORTHO05D008594 7.1e-32 141.0 114 57.0
CiPaw.09G171000 Carya illinoinensis HOM05D006951 ORTHO05D008594 9.3e-32 140.6 114 55.3
Manes.16G055400 Manihot esculenta HOM05D006951 ORTHO05D008594 9.3e-32 140.6 116 55.2
AagrBONN_evm.TU.Sc2ySwM_340.899 Anthoceros agrestis HOM05D006951 ORTHO05D008594 1.6e-31 139.8 123 48.8
CANSAT80G0954 Cannabis sativa HOM05D006951 ORTHO05D008594 1.6e-31 139.8 120 55.0
Cfa017635 Carpinus fangiana HOM05D006951 ORTHO05D008594 1.6e-31 139.8 114 56.1
AUR62042061 Chenopodium quinoa HOM05D006951 ORTHO05D008594 1.6e-31 139.8 115 55.7
Lj1g0019165 Lotus japonicus HOM05D006951 ORTHO05D008594 1.6e-31 139.8 120 56.7
Phvul.001G180100 Phaseolus vulgaris HOM05D006951 ORTHO05D008594 1.6e-31 139.8 124 54.8
Sed0009232 Sechium edule HOM05D006951 ORTHO05D008594 1.6e-31 139.8 125 54.4
Actinidia28914 Actinidia chinensis HOM05D006951 ORTHO05D008594 2.1e-31 139.4 114 58.8
Duzib106G1710 Durio zibethinus HOM05D006951 ORTHO05D008594 2.1e-31 139.4 122 54.1
EL10Ac7g16659 Beta vulgaris HOM05D006951 ORTHO05D008594 2.7e-31 139.0 114 54.4
AUR62026921 Chenopodium quinoa HOM05D006951 ORTHO05D008594 2.7e-31 139.0 115 54.8
Psat3g041600 Pisum sativum HOM05D006951 ORTHO05D008594 2.7e-31 139.0 120 55.8
ClCG04G009460 Citrullus lanatus HOM05D006951 ORTHO05D008594 3.5e-31 138.7 125 56.0
MELO3C024481.2 Cucumis melo HOM05D006951 ORTHO05D008594 3.5e-31 138.7 125 53.6
Eucgr.A01658 Eucalyptus grandis HOM05D006951 ORTHO05D008594 3.5e-31 138.7 114 56.1
FAN05G0469 Fragaria x ananassa HOM05D006951 ORTHO05D008594 6.0e-31 137.9 121 50.4
SGA_v2.0_scaffold35G14116 Striga asiatica HOM05D006951 ORTHO05D008594 6.0e-31 137.9 114 57.0
Cpa.g.sc456.2 Carica papaya HOM05D006951 ORTHO05D008594 7.9e-31 137.5 113 57.5
DCAR_017669 Daucus carota HOM05D006951 ORTHO05D008594 7.9e-31 137.5 125 52.8
FvH4_6g16580 Fragaria vesca HOM05D006951 ORTHO05D008594 7.9e-31 137.5 121 50.4
FAN14G1959 Fragaria x ananassa HOM05D006951 ORTHO05D008594 7.9e-31 137.5 121 50.4
PSO339G4731 Papaver somniferum HOM05D006951 ORTHO05D008594 7.9e-31 137.5 107 59.8
ATR0723G063 Amborella trichopoda HOM05D006951 ORTHO05D008594 1.0e-30 137.1 112 55.4
CsaV3_6G040080 Cucumis sativus L. HOM05D006951 ORTHO05D008594 1.0e-30 137.1 125 53.6
FAN05G0824 Fragaria x ananassa HOM05D006951 ORTHO05D008594 1.0e-30 137.1 121 50.4
TWI74G0247 Tripterygium wilfordii HOM05D006951 ORTHO05D008594 1.0e-30 137.1 114 55.3
vmacro07304 Vaccinium macrocarpon HOM05D006951 ORTHO05D008594 1.0e-30 137.1 107 59.8
TAR633G0596 Trochodendron aralioides HOM05D006951 ORTHO05D008594 1.3e-30 136.7 114 53.5
Aa31LG1G21700 Aethionema arabicum HOM05D006951 ORTHO05D008594 1.8e-30 136.3 125 51.2
BcaB01g05838 Brassica carinata HOM05D006951 ORTHO05D008594 1.8e-30 136.3 111 56.8
A03p01180 Brassica napus HOM05D006951 ORTHO05D008594 1.8e-30 136.3 111 56.8
C03p01520 Brassica napus HOM05D006951 ORTHO05D008594 1.8e-30 136.3 111 56.8
BolC3t12706H Brassica oleracea HOM05D006951 ORTHO05D008594 1.8e-30 136.3 111 56.8
BraA03t09500Z Brassica rapa HOM05D006951 ORTHO05D008594 1.8e-30 136.3 111 56.8
Thecc.05G069400 Theobroma cacao HOM05D006951 ORTHO05D008594 1.8e-30 136.3 107 57.9
unitig_8.g4717 Utricularia gibba HOM05D006951 ORTHO05D008594 1.8e-30 136.3 118 54.2
GSVIVG01033661001 Vitis vinifera HOM05D006951 ORTHO05D008594 1.8e-30 136.3 112 58.0
Ciclev10013072m.g Citrus clementina HOM05D006951 ORTHO05D008594 2.3e-30 136.0 112 55.4
ECA233G5925 Erigeron canadensis HOM05D006951 ORTHO05D008594 2.3e-30 136.0 114 57.0
Migut.L01713 Erythranthe guttata HOM05D006951 ORTHO05D008594 2.3e-30 136.0 125 53.6
Gohir.D09G141300 Gossypium hirsutum HOM05D006951 ORTHO05D008594 2.3e-30 136.0 112 54.5
Gorai.006G162200 Gossypium raimondii HOM05D006951 ORTHO05D008594 2.3e-30 136.0 112 54.5
HanXRQChr13g0400861 Helianthus annuus HOM05D006951 ORTHO05D008594 2.3e-30 136.0 114 56.1
PGR004G1868 Punica granatum HOM05D006951 ORTHO05D008594 2.3e-30 136.0 117 53.0
RcHm_v2.0_Chr3g0470511 Rosa chinensis HOM05D006951 ORTHO05D008594 2.3e-30 136.0 113 52.2
Thhalv10014956m.g Eutrema salsugineum HOM05D006951 ORTHO05D008594 3.0e-30 135.6 111 56.8
Sp6g39280 Schrenkiella parvula HOM05D006951 ORTHO05D008594 3.0e-30 135.6 111 55.9
BcaB01g05820 Brassica carinata HOM05D006951 ORTHO05D008594 3.9e-30 135.2 111 56.8
Nitab4.5_0009274g0040 Nicotiana tabacum HOM05D006951 ORTHO05D008594 3.9e-30 135.2 122 56.6
Nn6g35256 Nelumbo nucifera HOM05D006951 ORTHO05D008594 5.1e-30 134.8 114 57.9
PSO801G0767 Papaver somniferum HOM05D006951 ORTHO05D008594 5.1e-30 134.8 107 58.9
AL6G12830 Arabidopsis lyrata HOM05D006951 ORTHO05D008594 6.7e-30 134.4 111 55.9
MSTRG.10329 Avicennia marina HOM05D006951 ORTHO05D008594 6.7e-30 134.4 114 57.0
Carub.0006s0227 Capsella rubella HOM05D006951 ORTHO05D008594 6.7e-30 134.4 111 55.9
SalBow5G4376 Salvia bowleyana HOM05D006951 ORTHO05D008594 6.7e-30 134.4 111 55.9
SalBow5G4485 Salvia bowleyana HOM05D006951 ORTHO05D008594 6.7e-30 134.4 111 55.9
Atru.chr8.1776 Acer truncatum HOM05D006951 ORTHO05D008594 8.7e-30 134.0 119 51.3
Prupe.7G127500 Prunus persica HOM05D006951 ORTHO05D008594 8.7e-30 134.0 121 51.2
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 8.7e-30 134.0 121 53.7
FAN02G4365 Fragaria x ananassa HOM05D006951 ORTHO05D008594 1.1e-29 133.7 121 48.8
TAR369G1149 Trochodendron aralioides HOM05D006951 ORTHO05D008594 1.1e-29 133.7 111 55.9
CARHR209870 Cardamine hirsuta HOM05D006951 ORTHO05D008594 1.5e-29 133.3 111 55.0
Gohir.A09G145200 Gossypium hirsutum HOM05D006951 ORTHO05D008594 2.5e-29 132.5 112 53.6
Os03g0108000 Oryza sativa ssp. japonica HOM05D006951 ORTHO05D008594 4.3e-29 131.7 111 55.0
HanXRQChr02g0051701 Helianthus annuus HOM05D006951 ORTHO05D008594 5.6e-29 131.3 126 53.2
MD12G1109000 Malus domestica HOM05D006951 ORTHO05D008594 2.8e-28 129.0 114 50.0
CDE02G4226 Ceratophyllum demersum HOM05D006951 ORTHO05D008594 8.1e-28 127.5 115 53.9
Sc20g0005620 Simmondsia chinensis HOM05D006951 ORTHO05D008594 1.4e-27 126.7 102 58.8
Lsat_1_v5_gn_6_24461 Lactuca sativa HOM05D006951 ORTHO05D008594 4.0e-27 125.2 122 53.3
Zm00001eb394010 Zea mays HOM05D006951 ORTHO05D008594 5.3e-27 124.8 107 52.3
SMO118G0389 Selaginella moellendorffii HOM05D006951 ORTHO05D008594 2.0e-26 122.9 129 48.1
QL07p042869 Quercus lobata HOM05D006951 ORTHO05D008594 6.4e-25 117.9 143 43.4
Dinv35800 Davidia involucrata HOM05D006951 ORTHO05D008594 5.6e-21 104.8 67 68.7
TPR.G32820 Trifolium pratense HOM05D006951 ORTHO05D008594 4.2e-16 88.6 67 58.2
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 5.5e-16 88.2 147 38.8
CSS0013835 Camellia sinensis var. sinensis HOM05D006951 ORTHO05D008594 2.7e-15 85.9 60 61.7
AT5G03455 Arabidopsis thaliana HOM05D006951 ORTHO05D008594 3.0e-14 82.4 58 62.1
TPR.G15158 Trifolium pratense HOM05D006951 ORTHO05D008594 1.0e-09 67.4 68 50.0
PGR004G2181 Punica granatum HOM05D006951 ORTHO05D008594 1.7e-09 66.6 53 54.7
Cre01.g024850 Chlamydomonas reinhardtii HOM05D027504 ORTHO05D028778 7.2e-08 61.2 94 41.5
Cre07.g352550 Chlamydomonas reinhardtii HOM05D027504 ORTHO05D028778 3.6e-07 58.9 106 33.0
Os10g0545700 Oryza sativa ssp. japonica HOM05D006951 ORTHO05D008594 7.9e-07 57.8 59 45.8
CSS0008283 Camellia sinensis var. sinensis HOM05D006951 ORTHO05D008594 1.0e-06 57.4 54 50.0
BcaC06g32064 Brassica carinata HOM05D006951 ORTHO05D008594 6.7e-06 54.7 54 48.1


User provided reference genes

Program Settings