Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 3.0e-290 1001.1 502 100.0
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 1.5e-209 733.0 496 74.6
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 6.4e-208 727.6 493 73.0
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 6.4e-208 727.6 493 73.2
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 6.4e-208 727.6 491 72.3
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 6.4e-208 727.6 489 74.0
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 1.1e-207 726.9 488 73.4
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 1.4e-207 726.5 491 72.9
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.4e-207 726.5 488 73.8
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 1.9e-207 726.1 488 73.8
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 4.1e-207 724.9 489 73.2
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 5.4e-207 724.5 488 72.3
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 7.0e-207 724.2 488 73.4
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 9.2e-207 723.8 490 72.7
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 1.2e-206 723.4 488 72.3
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 1.2e-206 723.4 490 73.3
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 2.0e-206 722.6 488 72.3
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 2.7e-206 722.2 489 72.4
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 2.7e-206 722.2 489 73.0
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 4.6e-206 721.5 488 73.4
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 4.6e-206 721.5 488 72.7
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.0e-205 720.3 488 73.2
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 1.7e-205 719.5 488 73.4
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 2.3e-205 719.2 491 72.5
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 2.3e-205 719.2 499 71.7
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 3.0e-205 718.8 488 73.4
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 3.9e-205 718.4 493 71.6
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 5.0e-205 718.0 486 72.4
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 5.0e-205 718.0 492 72.4
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 6.6e-205 717.6 490 72.4
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 8.6e-205 717.2 489 72.6
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 8.6e-205 717.2 492 71.7
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 1.1e-204 716.8 489 71.6
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 1.1e-204 716.8 488 72.3
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 1.1e-204 716.8 489 72.8
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 1.1e-204 716.8 488 71.7
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 1.5e-204 716.5 489 71.8
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 1.5e-204 716.5 488 72.5
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 1.5e-204 716.5 488 72.5
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.5e-204 716.5 488 73.4
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 1.9e-204 716.1 492 72.4
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 1.9e-204 716.1 489 71.6
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 1.9e-204 716.1 490 72.0
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.5e-204 715.7 492 71.7
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 2.5e-204 715.7 488 72.1
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 3.3e-204 715.3 489 72.4
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 3.3e-204 715.3 488 72.1
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 3.3e-204 715.3 490 72.7
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 4.3e-204 714.9 493 72.0
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 4.3e-204 714.9 488 73.0
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 4.3e-204 714.9 488 73.0
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 4.3e-204 714.9 488 73.0
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 5.6e-204 714.5 488 73.4
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.6e-204 714.5 488 73.2
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.2e-203 713.4 492 71.5
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 1.2e-203 713.4 488 72.7
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 1.6e-203 713.0 490 72.0
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.6e-203 713.0 492 71.7
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 2.1e-203 712.6 491 71.9
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.8e-203 712.2 490 73.1
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 3.6e-203 711.8 489 71.6
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 4.7e-203 711.4 491 72.5
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 4.7e-203 711.4 489 72.0
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 6.2e-203 711.1 488 72.5
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 6.2e-203 711.1 492 71.3
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 8.1e-203 710.7 488 71.1
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 1.1e-202 710.3 491 71.7
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.4e-202 709.9 490 73.3
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 1.4e-202 709.9 488 72.5
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.4e-202 709.9 489 72.2
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 1.8e-202 709.5 490 71.4
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 2.3e-202 709.1 490 71.2
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 3.1e-202 708.8 488 71.1
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 3.1e-202 708.8 490 72.0
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 5.2e-202 708.0 491 71.1
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 5.2e-202 708.0 488 71.9
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 6.8e-202 707.6 490 70.8
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 6.8e-202 707.6 484 71.7
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 8.9e-202 707.2 504 70.2
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 8.9e-202 707.2 498 70.1
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 1.2e-201 706.8 492 70.7
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 1.5e-201 706.4 493 70.8
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 1.5e-201 706.4 488 72.1
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 2.6e-201 705.7 488 71.5
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 3.4e-201 705.3 490 71.8
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 4.4e-201 704.9 493 70.2
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.3e-200 703.4 493 70.2
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 2.2e-200 702.6 490 71.4
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.7e-200 701.8 490 70.8
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 1.1e-199 700.3 491 71.5
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 1.4e-199 699.9 475 72.2
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 1.9e-199 699.5 488 70.9
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 1.9e-199 699.5 487 70.8
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 2.4e-199 699.1 488 70.1
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 4.1e-199 698.4 501 70.7
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.6e-198 696.4 503 69.0
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.7e-197 693.0 489 71.4
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 5.1e-197 691.4 488 69.9
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 5.1e-197 691.4 503 69.6
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 1.1e-196 690.3 488 69.9
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 1.1e-196 690.3 522 66.9
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.1e-196 690.3 526 66.5
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 9.5e-196 687.2 520 67.3
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 3.6e-195 685.3 476 70.4
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.8e-194 682.9 486 69.3
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 3.1e-194 682.2 491 69.9
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.2e-193 680.2 486 68.7
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 7.6e-193 677.6 434 75.6
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 2.6e-185 652.5 443 72.9
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 1.9e-183 646.4 443 72.7
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 2.7e-182 642.5 445 71.7
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 3.9e-181 638.6 443 72.2
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.8e-178 629.8 443 71.8
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 1.2e-177 627.1 438 71.7
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 1.3e-173 613.6 385 76.9
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 9.6e-172 607.4 508 61.0
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 1.1e-159 567.4 407 68.6
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 6.0e-158 561.6 500 60.6
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 1.8e-154 550.1 381 72.7
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 3.1e-154 549.3 473 61.9
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 3.8e-152 542.3 488 58.2
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 1.7e-147 526.9 533 51.6
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.1e-146 521.2 385 70.4
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 1.0e-144 517.7 495 57.6
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 5.0e-144 515.4 381 69.6
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 2.4e-130 469.9 346 69.9
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 5.3e-130 468.8 465 57.0
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 3.5e-129 466.1 385 63.4
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 6.3e-123 445.3 604 44.0
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.1e-122 442.6 267 80.5
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.4e-109 401.0 434 53.9
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.2e-108 397.9 245 78.0
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 7.8e-105 385.2 241 74.7
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 3.8e-104 382.9 249 74.3
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 3.3e-95 353.2 302 61.3
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 5.4e-90 335.9 255 66.3
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.0e-89 332.4 225 74.7
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 3.1e-85 320.1 268 63.1
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 1.2e-84 318.2 311 56.6
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.2e-78 298.1 242 64.5
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 3.9e-72 276.6 238 60.9
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.6e-70 271.2 312 51.0
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 3.2e-66 256.9 247 56.3
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.6e-46 191.4 259 43.2
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 1.7e-43 181.4 160 60.6
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 1.3e-40 171.8 96 82.3
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 1.3e-38 165.2 96 77.1
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 8.2e-38 162.5 97 78.4
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.8e-37 161.4 155 56.8
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 5.3e-37 159.8 142 55.6
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 3.4e-36 157.1 147 54.4
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 2.1e-33 147.9 300 37.0
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 7.4e-31 139.4 100 69.0
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 3.8e-27 127.1 75 77.3
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 1.9e-26 124.8 124 51.6
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 5.1e-24 116.7 85 68.2
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 2.0e-23 114.8 79 68.4
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 2.1e-17 94.7 160 41.2
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 8.0e-17 92.8 93 54.8
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 3.5e-12 77.4 60 70.0
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 2.7e-09 67.8 33 87.9
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 1.2e-07 62.4 51 62.7
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 1.7e-06 58.5 74 44.6
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 1.7e-06 58.5 35 71.4
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 2.2e-06 58.2 30 80.0


User provided reference genes

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