Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0028s0060 Marchantia polymorpha HOM05D024012 ORTHO05D252990 0.0e+00 1675.6 941 100.0
Mapoly0028s0058 Marchantia polymorpha HOM05D000567 ORTHO05D020869 5.5e-19 100.9 196 32.7
Pp3c25_13850 Physcomitrium patens HOM05D024145 ORTHO05D022909 1.4e-14 86.3 166 29.5
Mapoly0028s0062 Marchantia polymorpha HOM05D024145 ORTHO05D022909 1.3e-12 79.7 201 34.3
Peaxi162Scf00338g00912 Petunia axillaris HOM05D001604 ORTHO05D001432 5.0e-12 77.8 301 24.9
Pp3c11_23740 Physcomitrium patens HOM05D024145 ORTHO05D020869 5.0e-12 77.8 157 32.5
Nitab4.5_0010448g0010 Nicotiana tabacum HOM05D001604 ORTHO05D001432 4.2e-11 74.7 252 25.4
Eucgr.H01487 Eucalyptus grandis HOM05D001604 ORTHO05D001432 1.6e-10 72.8 395 23.8
MELO3C021212.2 Cucumis melo HOM05D001604 ORTHO05D001432 7.9e-10 70.5 254 25.2
SMO115G0143 Selaginella moellendorffii HOM05D024012 ORTHO05D020869 7.9e-10 70.5 192 27.6
SMO115G0056 Selaginella moellendorffii HOM05D024012 ORTHO05D020869 1.8e-09 69.3 139 33.1
Glyma.10G026000 Glycine max HOM05D001604 ORTHO05D001432 3.0e-09 68.6 310 24.8
Eucgr.D01841 Eucalyptus grandis HOM05D001604 ORTHO05D001432 6.7e-09 67.4 209 24.9
Glyma.02G147800 Glycine max HOM05D001604 ORTHO05D001432 6.7e-09 67.4 215 27.0
CDE12G0719 Ceratophyllum demersum HOM05D001604 ORTHO05D001432 1.5e-08 66.2 203 28.1
Medtr1g072320 Medicago truncatula HOM05D001604 ORTHO05D001432 1.5e-08 66.2 204 25.5
SMO115G0245 Selaginella moellendorffii HOM05D024012 ORTHO05D020869 1.5e-08 66.2 127 32.3
CsaV3_6G000530 Cucumis sativus L. HOM05D001604 ORTHO05D001432 2.0e-08 65.9 253 24.5
MSTRG.21566 Avicennia marina HOM05D001604 ORTHO05D001432 2.6e-08 65.5 224 24.6
Nn4g26227 Nelumbo nucifera HOM05D001604 ORTHO05D001432 2.6e-08 65.5 227 29.1
ClCG06G003710 Citrullus lanatus HOM05D001604 ORTHO05D001432 3.3e-08 65.1 254 23.6
Cc01_g19570 Coffea canephora HOM05D001604 ORTHO05D001432 3.3e-08 65.1 206 26.7
Manes.01G208400 Manihot esculenta HOM05D001604 ORTHO05D001432 4.3e-08 64.7 227 26.9
VMungo0720G2502 Vigna mungo HOM05D001604 ORTHO05D001432 4.3e-08 64.7 222 26.1
Lj5g0022580 Lotus japonicus HOM05D001604 ORTHO05D001432 5.7e-08 64.3 201 25.4
Sabra05G0158700 Salix brachista HOM05D001604 ORTHO05D001432 5.7e-08 64.3 297 25.9
Nitab4.5_0001028g0030 Nicotiana tabacum HOM05D001604 ORTHO05D001432 7.4e-08 63.9 275 24.7
Sabra02G0044000 Salix brachista HOM05D001604 ORTHO05D001432 7.4e-08 63.9 231 28.1
SMO166G0045 Selaginella moellendorffii HOM05D024012 ORTHO05D020869 7.4e-08 63.9 88 37.5
Sopen09g026820 Solanum pennellii HOM05D001604 ORTHO05D001432 7.4e-08 63.9 206 27.7
PGSC0003DMG400012891 Solanum tuberosum HOM05D001604 ORTHO05D001432 7.4e-08 63.9 201 27.4
MBI19_g42513_MAGBIO Magnolia biondii HOM05D001604 ORTHO05D001432 9.7e-08 63.5 72 45.8
Nn1g02196 Nelumbo nucifera HOM05D001604 ORTHO05D001432 9.7e-08 63.5 207 29.0
Rhsim05G0054200 Rhododendron simsii HOM05D001601 ORTHO05D002628 9.7e-08 63.5 237 24.5
Sabra14G0060900 Salix brachista HOM05D001604 ORTHO05D001432 9.7e-08 63.5 208 24.5
SHI14547 Sapria himalayana HOM05D001604 ORTHO05D001432 9.7e-08 63.5 208 26.4
BcaC04g21675 Brassica carinata HOM05D000567 ORTHO05D000767 1.3e-07 63.2 199 28.1
Ciclev10019118m.g Citrus clementina HOM05D001604 ORTHO05D001432 1.3e-07 63.2 201 25.9
Pp3c16_21680 Physcomitrium patens HOM05D000567 ORTHO05D022909 1.3e-07 63.2 89 36.0
TPR.G9117 Trifolium pratense HOM05D001604 ORTHO05D001432 1.3e-07 63.2 202 25.2
GSVIVG01011123001 Vitis vinifera HOM05D001604 ORTHO05D001432 1.3e-07 63.2 202 27.7
CSS0011589 Camellia sinensis var. sinensis HOM05D002130 ORTHO05D002157 1.7e-07 62.8 211 25.1
Duzib138G0897 Durio zibethinus HOM05D001604 ORTHO05D001432 1.7e-07 62.8 208 24.5
Actinidia09144 Actinidia chinensis HOM05D001604 ORTHO05D001432 2.2e-07 62.4 201 25.9
EL10Ac7g17227 Beta vulgaris HOM05D001604 ORTHO05D001432 2.2e-07 62.4 84 41.7
CSS0039244 Camellia sinensis var. sinensis HOM05D001604 ORTHO05D001432 2.2e-07 62.4 122 32.8
Lalb_Chr21g0306491 Lupinus albus HOM05D001604 ORTHO05D001432 2.2e-07 62.4 313 23.0
Phvul.007G171333 Phaseolus vulgaris HOM05D001604 ORTHO05D001432 2.2e-07 62.4 201 28.4
Potri.005G208600 Populus trichocarpa HOM05D001604 ORTHO05D001432 2.2e-07 62.4 227 25.6
Solyc09g065100.3 Solanum lycopersicum HOM05D001604 ORTHO05D001432 2.2e-07 62.4 206 27.7
Glyma.03G152800 Glycine max HOM05D001604 ORTHO05D001432 2.8e-07 62.0 189 25.4
Gohir.A08G185800 Gossypium hirsutum HOM05D001604 ORTHO05D001432 3.7e-07 61.6 215 24.7
Lj1C46T5 Lonicera japonica HOM05D001604 ORTHO05D001432 3.7e-07 61.6 64 51.6
PSO675G5090 Papaver somniferum HOM05D000652 ORTHO05D000486 3.7e-07 61.6 78 44.9
Potri.002G054100 Populus trichocarpa HOM05D001604 ORTHO05D001432 3.7e-07 61.6 232 28.4
CANSAT25G1330 Cannabis sativa HOM05D001604 ORTHO05D001432 4.8e-07 61.2 341 21.7
Migut.D00287 Erythranthe guttata HOM05D001604 ORTHO05D001432 4.8e-07 61.2 65 49.2
Pp3c9_18600 Physcomitrium patens HOM05D000469 ORTHO05D000323 4.8e-07 61.2 246 26.8
QL11p050977 Quercus lobata HOM05D001601 ORTHO05D002628 4.8e-07 61.2 232 23.7
TWI81G0152 Tripterygium wilfordii HOM05D001604 ORTHO05D001432 4.8e-07 61.2 196 24.0
Cpa.g.sc52.26 Carica papaya HOM05D001604 ORTHO05D001432 6.3e-07 60.8 195 26.2
Ca_09761_v3 Cicer arietinum L. HOM05D001604 ORTHO05D001432 6.3e-07 60.8 80 46.2
COL.COLO4_09107 Corchorus olitorius HOM05D001604 ORTHO05D001432 6.3e-07 60.8 162 32.1
FAN06G2743 Fragaria x ananassa HOM05D000469 ORTHO05D000323 6.3e-07 60.8 204 28.4
Manes.01G257200 Manihot esculenta HOM05D001604 ORTHO05D001432 6.3e-07 60.8 205 24.9
PSO541G0265 Papaver somniferum HOM05D000652 ORTHO05D000486 6.3e-07 60.8 78 44.9
PGR031G3019 Punica granatum HOM05D001604 ORTHO05D001432 6.3e-07 60.8 196 26.0
Sc05g0004930 Simmondsia chinensis HOM05D001604 ORTHO05D001432 6.3e-07 60.8 60 50.0
THA.LOC104821964 Tarenaya hassleriana HOM05D000652 ORTHO05D000486 6.3e-07 60.8 77 41.6
FvH4_2g23700 Fragaria vesca HOM05D001604 ORTHO05D001432 8.2e-07 60.5 217 25.8
FAN20G2337 Fragaria x ananassa HOM05D001604 ORTHO05D001432 8.2e-07 60.5 217 24.9
FAN24G1029 Fragaria x ananassa HOM05D001604 ORTHO05D001432 8.2e-07 60.5 217 25.8
Lj2g0012973 Lotus japonicus HOM05D000652 ORTHO05D000486 8.2e-07 60.5 74 48.6
TWI59G0241 Tripterygium wilfordii HOM05D001604 ORTHO05D001432 8.2e-07 60.5 229 25.8
C09p29000 Brassica napus HOM05D000567 ORTHO05D000767 1.1e-06 60.1 213 26.3
CiPaw.01G060900 Carya illinoinensis HOM05D001604 ORTHO05D001432 1.1e-06 60.1 227 24.2
CDE01G0345 Ceratophyllum demersum HOM05D001604 ORTHO05D001432 1.1e-06 60.1 99 39.4
Lsat_1_v5_gn_4_71800 Lactuca sativa HOM05D001601 ORTHO05D002628 1.1e-06 60.1 225 22.7
MD07G1137500 Malus domestica HOM05D001604 ORTHO05D001432 1.1e-06 60.1 211 24.2
Os04g0557200 Oryza sativa ssp. japonica HOM05D001604 ORTHO05D001432 1.1e-06 60.1 210 22.9
Pp3c21_15150 Physcomitrium patens HOM05D001604 ORTHO05D001432 1.1e-06 60.1 98 38.8
THA.LOC104814104 Tarenaya hassleriana HOM05D001604 ORTHO05D001432 1.1e-06 60.1 235 23.4
arahy.Tifrunner.gnm1.ann1.26781N Arachis hypogaea HOM05D001604 ORTHO05D001432 1.4e-06 59.7 334 23.4
CAN.G346.13 Capsicum annuum HOM05D000567 ORTHO05D001432 1.4e-06 59.7 74 43.2
Glyma.19G155300 Glycine max HOM05D001604 ORTHO05D001432 1.4e-06 59.7 195 24.6
Manes.05G075400 Manihot esculenta HOM05D001604 ORTHO05D001432 1.4e-06 59.7 63 47.6
QL12p022039 Quercus lobata HOM05D001604 ORTHO05D001432 1.4e-06 59.7 63 47.6
Rhsim13G0024200 Rhododendron simsii HOM05D001604 ORTHO05D001432 1.4e-06 59.7 257 25.3
RcHm_v2.0_Chr1g0355211 Rosa chinensis HOM05D001604 ORTHO05D001432 1.4e-06 59.7 195 26.2
SEGI_18479 Sequoiadendron giganteum HOM05D001604 ORTHO05D001432 1.4e-06 59.7 220 25.5
SEGI_32346 Sequoiadendron giganteum HOM05D000652 ORTHO05D000486 1.4e-06 59.7 77 42.9
THA.LOC104801584 Tarenaya hassleriana HOM05D001604 ORTHO05D001432 1.4e-06 59.7 198 23.2
vmacro10525 Vaccinium macrocarpon HOM05D000652 ORTHO05D000486 1.4e-06 59.7 76 42.1
Atru.chr3.1271 Acer truncatum HOM05D000652 ORTHO05D000486 1.8e-06 59.3 79 45.6
Atru.chr5.1424 Acer truncatum HOM05D001604 ORTHO05D001432 1.8e-06 59.3 328 23.5
CiPaw.01G045900 Carya illinoinensis HOM05D000652 ORTHO05D000486 1.8e-06 59.3 82 47.6
FvH4_7g14230 Fragaria vesca HOM05D001604 ORTHO05D001432 1.8e-06 59.3 253 24.9
FAN27G3083 Fragaria x ananassa HOM05D001604 ORTHO05D001432 1.8e-06 59.3 220 25.9
Glyma.01G023833 Glycine max HOM05D000652 ORTHO05D000486 1.8e-06 59.3 106 38.7
Lj1g0021883 Lotus japonicus HOM05D000652 ORTHO05D000486 1.8e-06 59.3 136 38.2
MBI08_g34004_MAGBIO Magnolia biondii HOM05D001601 ORTHO05D002628 1.8e-06 59.3 228 25.0
PSO170G2885 Papaver somniferum HOM05D001604 ORTHO05D001432 1.8e-06 59.3 226 26.1
PSO302G0086 Papaver somniferum HOM05D001604 ORTHO05D001432 1.8e-06 59.3 215 26.0
Rhsim05G0054400 Rhododendron simsii HOM05D001601 ORTHO05D002628 1.8e-06 59.3 230 25.2
Sc01g0003410 Simmondsia chinensis HOM05D001604 ORTHO05D001432 1.8e-06 59.3 194 25.8
THA.LOC104801758 Tarenaya hassleriana HOM05D000652 ORTHO05D000486 1.8e-06 59.3 76 40.8
TWI14G0890 Tripterygium wilfordii HOM05D000469 ORTHO05D000323 1.8e-06 59.3 213 27.2
TWI14G1132 Tripterygium wilfordii HOM05D001604 ORTHO05D001432 1.8e-06 59.3 227 27.3
VMungo0720G1541 Vigna mungo HOM05D001601 ORTHO05D002628 1.8e-06 59.3 216 22.7
Ah.08g212140 Amaranthus hybridus HOM05D001604 ORTHO05D001432 2.4e-06 58.9 77 40.3
Aqoxy3G03904 Aquilegia oxysepala HOM05D000652 ORTHO05D000486 2.4e-06 58.9 75 41.3
AUR62036822 Chenopodium quinoa HOM05D001604 ORTHO05D001432 2.4e-06 58.9 82 40.2
DCAR_004707 Daucus carota HOM05D001601 ORTHO05D002628 2.4e-06 58.9 218 25.2
DCAR_004708 Daucus carota HOM05D001601 ORTHO05D002628 2.4e-06 58.9 218 25.2
Dinv32944 Davidia involucrata HOM05D001604 ORTHO05D001432 2.4e-06 58.9 60 48.3
Glyma.02G041000 Glycine max HOM05D000652 ORTHO05D000486 2.4e-06 58.9 93 41.9
Glyma.10G281800 Glycine max HOM05D001601 ORTHO05D002628 2.4e-06 58.9 212 21.2
MD03G1266300 Malus domestica HOM05D001604 ORTHO05D001432 2.4e-06 58.9 214 25.2
SMO165G0062 Selaginella moellendorffii HOM05D000652 ORTHO05D000486 2.4e-06 58.9 79 40.5
TAR365G0648 Trochodendron aralioides HOM05D001604 ORTHO05D001432 2.4e-06 58.9 80 42.5
Zm00001eb303250 Zea mays HOM05D001604 ORTHO05D001432 2.4e-06 58.9 211 27.5
Atru.chr5.489 Acer truncatum HOM05D001604 ORTHO05D001432 3.1e-06 58.5 209 25.4
ATR0626G179 Amborella trichopoda HOM05D001604 ORTHO05D001432 3.1e-06 58.5 205 24.9
AagrBONN_evm.TU.Sc2ySwM_228.602 Anthoceros agrestis HOM05D000567 ORTHO05D000767 3.1e-06 58.5 225 24.9
Cpa.g.sc7.53 Carica papaya HOM05D000652 ORTHO05D000486 3.1e-06 58.5 80 43.8
CiPaw.08G104800 Carya illinoinensis HOM05D001604 ORTHO05D001432 3.1e-06 58.5 63 46.0
CiPaw.16G002900 Carya illinoinensis HOM05D000652 ORTHO05D000486 3.1e-06 58.5 81 43.2
AUR62038620 Chenopodium quinoa HOM05D001604 ORTHO05D001432 3.1e-06 58.5 200 26.0
ECA234G0339 Erigeron canadensis HOM05D001601 ORTHO05D002628 3.1e-06 58.5 240 22.9
Glyma.20G107466 Glycine max HOM05D001601 ORTHO05D002628 3.1e-06 58.5 212 22.6
Lalb_Chr04g0255001 Lupinus albus HOM05D000652 ORTHO05D000486 3.1e-06 58.5 76 40.8
Sed0010464 Sechium edule HOM05D000652 ORTHO05D000486 3.1e-06 58.5 96 38.5
TWI59G0203 Tripterygium wilfordii HOM05D000469 ORTHO05D000323 3.1e-06 58.5 204 26.0
HPP92_008507 Vanilla planifolia HOM05D001604 ORTHO05D001432 3.1e-06 58.5 85 42.4
Ciclev10016289m.g Citrus clementina HOM05D000652 ORTHO05D000486 4.1e-06 58.2 57 52.6
Cc05_g08220 Coffea canephora HOM05D000652 ORTHO05D000486 4.1e-06 58.2 57 56.1
DCAR_002739 Daucus carota HOM05D001604 ORTHO05D001432 4.1e-06 58.2 60 46.7
ECA248G1176 Erigeron canadensis HOM05D001604 ORTHO05D001432 4.1e-06 58.2 122 32.0
HanXRQChr17g0555871 Helianthus annuus HOM05D001604 ORTHO05D001432 4.1e-06 58.2 109 31.2
Pp3c6_3190 Physcomitrium patens HOM05D000567 ORTHO05D001432 4.1e-06 58.2 157 29.3
Psat6g060480 Pisum sativum HOM05D001604 ORTHO05D001432 4.1e-06 58.2 201 25.9
Potri.014G083900 Populus trichocarpa HOM05D001604 ORTHO05D001432 4.1e-06 58.2 208 24.0
SEGI_21409 Sequoiadendron giganteum HOM05D000652 ORTHO05D000486 4.1e-06 58.2 59 50.8
TAR381G1205 Trochodendron aralioides HOM05D001601 ORTHO05D002628 4.1e-06 58.2 225 24.4
VMungo1215G1897 Vigna mungo HOM05D000652 ORTHO05D000486 4.1e-06 58.2 93 40.9
ATR0680G139 Amborella trichopoda HOM05D001604 ORTHO05D001432 5.3e-06 57.8 194 25.3
Ciclev10019219m.g Citrus clementina HOM05D001604 ORTHO05D001432 5.3e-06 57.8 209 25.4
Dinv14116 Davidia involucrata HOM05D001601 ORTHO05D002628 5.3e-06 57.8 248 24.2
Eucgr.D02287 Eucalyptus grandis HOM05D001604 ORTHO05D001432 5.3e-06 57.8 195 25.1
Eucgr.G02351 Eucalyptus grandis HOM05D000652 ORTHO05D000486 5.3e-06 57.8 79 40.5
FAN13G1186 Fragaria x ananassa HOM05D000652 ORTHO05D000486 5.3e-06 57.8 64 50.0
HanXRQChr17g0552271 Helianthus annuus HOM05D000652 ORTHO05D000486 5.3e-06 57.8 128 34.4
MD05G1122900 Malus domestica HOM05D001601 ORTHO05D002628 5.3e-06 57.8 230 24.3
Medtr1g112680 Medicago truncatula HOM05D001601 ORTHO05D002628 5.3e-06 57.8 215 23.3
Oeu034957.1 Olea europaea HOM05D000652 ORTHO05D000486 5.3e-06 57.8 80 45.0
SalBow4G2550 Salvia bowleyana HOM05D001604 ORTHO05D001432 5.3e-06 57.8 60 46.7
TAR636G3424 Trochodendron aralioides HOM05D001604 ORTHO05D001432 5.3e-06 57.8 60 46.7
CARHR260810 Cardamine hirsuta HOM05D001604 ORTHO05D001432 6.9e-06 57.4 57 47.4
CsaV3_2G030310 Cucumis sativus L. HOM05D000652 ORTHO05D000486 6.9e-06 57.4 101 39.6
Duzib133G0668 Durio zibethinus HOM05D001604 ORTHO05D001432 6.9e-06 57.4 344 23.0
Duzib251G0872 Durio zibethinus HOM05D000652 ORTHO05D000486 6.9e-06 57.4 75 41.3
Lj3g0022326 Lotus japonicus HOM05D001604 ORTHO05D001432 6.9e-06 57.4 248 22.6
Lalb_Chr09g0328021 Lupinus albus HOM05D000652 ORTHO05D000486 6.9e-06 57.4 57 50.9
Lalb_Chr10g0099691 Lupinus albus HOM05D000652 ORTHO05D000486 6.9e-06 57.4 76 40.8
MD13G1047100 Malus domestica HOM05D000652 ORTHO05D000486 6.9e-06 57.4 130 35.4
Phvul.007G019000 Phaseolus vulgaris HOM05D001601 ORTHO05D002628 6.9e-06 57.4 221 22.2
Potri.002G159400 Populus trichocarpa HOM05D001604 ORTHO05D001432 6.9e-06 57.4 247 23.1
Prupe.5G100700 Prunus persica HOM05D001604 ORTHO05D001432 6.9e-06 57.4 212 23.6
Hund05769 Selenicereus undatus HOM05D000652 ORTHO05D000486 6.9e-06 57.4 79 40.5
VMungo0251G0627 Vigna mungo HOM05D000652 ORTHO05D000486 6.9e-06 57.4 59 52.5
Actinidia00747 Actinidia chinensis HOM05D001604 ORTHO05D001432 9.1e-06 57.0 206 25.7
Aqoxy2G03301 Aquilegia oxysepala HOM05D001604 ORTHO05D001432 9.1e-06 57.0 206 26.2
Gohir.A11G088700 Gossypium hirsutum HOM05D001604 ORTHO05D001432 9.1e-06 57.0 208 23.6
Gohir.D13G069400 Gossypium hirsutum HOM05D000652 ORTHO05D000486 9.1e-06 57.0 74 43.2
MBI12_g24826_MAGBIO Magnolia biondii HOM05D000652 ORTHO05D000486 9.1e-06 57.0 75 38.7
Oeu058984.1 Olea europaea HOM05D000652 ORTHO05D000486 9.1e-06 57.0 57 56.1
PGR119G0019 Punica granatum HOM05D001604 ORTHO05D001432 9.1e-06 57.0 342 23.4
RcHm_v2.0_Chr2g0111351 Rosa chinensis HOM05D000652 ORTHO05D000486 9.1e-06 57.0 86 43.0
Sed0005250 Sechium edule HOM05D000652 ORTHO05D000486 9.1e-06 57.0 82 39.0
Sopen04g002080 Solanum pennellii HOM05D000652 ORTHO05D000486 9.1e-06 57.0 60 48.3
TAR371G0987 Trochodendron aralioides HOM05D000652 ORTHO05D000486 9.1e-06 57.0 124 37.1


User provided reference genes

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