Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 0.0e+00 1601.6 835 100.0
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 8.5e-274 947.2 841 57.6
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 2.2e-237 826.2 844 53.6
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 5.4e-236 821.6 835 52.1
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 8.6e-234 814.3 830 50.2
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 1.2e-222 777.3 840 51.7
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 2.2e-213 746.5 879 48.6
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 1.1e-212 744.2 830 47.1
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 1.3e-208 730.7 829 46.7
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 4.8e-208 728.8 834 45.7
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 1.3e-205 720.7 830 46.4
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 6.4e-205 718.4 827 45.1
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 8.4e-205 718.0 830 44.6
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 3.5e-203 712.6 832 46.4
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 1.8e-202 710.3 832 44.6
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 5.1e-202 708.8 833 45.3
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 1.5e-201 707.2 830 44.1
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 1.3e-200 704.1 842 45.8
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 4.8e-200 702.2 833 44.4
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 3.4e-198 696.0 832 43.9
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 7.6e-198 694.9 832 45.1
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 8.4e-197 691.4 804 45.3
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 8.4e-197 691.4 771 46.4
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 3.5e-195 686.0 832 44.5
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 1.3e-194 684.1 828 45.5
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 3.0e-194 682.9 832 44.5
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 5.1e-194 682.2 850 43.8
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 6.7e-194 681.8 838 44.2
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 1.5e-193 680.6 837 44.0
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 5.6e-193 678.7 797 44.0
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 1.6e-192 677.2 829 43.3
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 1.1e-191 674.5 839 43.7
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 2.4e-191 673.3 836 43.5
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 4.0e-191 672.5 846 43.3
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 6.9e-191 671.8 833 44.4
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 2.0e-190 670.2 836 44.0
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 4.2e-188 662.5 820 43.9
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 4.2e-188 662.5 836 42.9
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 9.3e-188 661.4 834 43.0
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.1e-187 660.2 830 42.9
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 2.1e-187 660.2 834 42.2
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 2.1e-187 660.2 832 42.5
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.0e-187 658.7 830 42.8
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 8.7e-186 654.8 792 43.9
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.5e-185 654.1 830 41.8
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 1.9e-185 653.7 830 41.8
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 3.3e-185 652.9 832 42.3
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.6e-184 650.6 836 42.6
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.2e-184 650.2 850 40.7
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 2.2e-184 650.2 834 41.8
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 4.8e-184 649.0 798 44.1
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 3.1e-183 646.4 832 43.4
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 1.2e-182 644.4 825 43.2
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 8.5e-181 638.3 837 41.8
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 9.3e-180 634.8 864 42.1
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 1.6e-179 634.0 855 41.6
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 7.9e-179 631.7 838 42.4
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 1.3e-178 630.9 798 41.7
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 3.3e-177 626.3 830 42.3
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 5.7e-177 625.5 828 39.9
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 7.4e-177 625.2 865 40.7
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 6.3e-176 622.1 833 41.1
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 3.1e-175 619.8 869 41.1
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 9.1e-175 618.2 830 41.9
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 8.5e-173 611.7 798 42.4
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 8.5e-173 611.7 857 40.6
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 1.9e-172 610.5 836 40.1
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 2.5e-172 610.1 829 40.5
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 1.8e-170 604.0 836 40.2
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 2.3e-170 603.6 837 39.7
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 4.4e-169 599.4 834 40.4
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 6.3e-168 595.5 830 39.5
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 4.1e-167 592.8 824 41.7
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 4.5e-166 589.3 830 38.1
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 6.5e-165 585.5 779 43.1
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 5.5e-164 582.4 902 37.9
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.6e-163 579.7 836 37.6
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 2.4e-159 567.0 1069 36.3
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 2.4e-159 567.0 832 39.8
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 1.0e-154 551.6 839 36.7
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 6.3e-152 542.3 784 39.2
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.8e-151 540.8 851 37.6
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.6e-150 537.7 851 37.5
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 2.1e-147 527.3 738 39.2
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.4e-143 512.7 846 36.8
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 1.0e-141 508.4 834 36.0
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.3e-141 507.3 850 35.4
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 1.1e-140 505.0 769 39.8
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 1.5e-140 504.6 835 36.3
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 6.8e-138 495.7 806 36.6
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 8.9e-138 495.4 806 36.6
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 1.5e-137 494.6 806 36.6
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 2.0e-137 494.2 806 36.7
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 2.0e-137 494.2 806 36.7
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 2.6e-137 493.8 805 35.4
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 7.0e-135 485.7 797 35.9
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 2.0e-134 484.2 821 36.2
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 4.5e-134 483.0 801 35.7
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 5.9e-134 482.6 806 36.2
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 1.3e-133 481.5 851 35.0
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 8.9e-130 468.8 801 35.1
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 2.0e-129 467.6 803 35.1
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 7.5e-129 465.7 806 35.2
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 2.2e-128 464.2 814 34.8
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 4.9e-128 463.0 795 35.2
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 6.4e-128 462.6 684 40.8
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 4.3e-124 449.9 1139 29.1
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 3.1e-122 443.7 827 34.5
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 8.9e-122 442.2 828 34.1
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.5e-121 441.4 473 48.6
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 4.4e-113 413.3 536 42.7
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 1.3e-112 411.8 1327 26.7
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.0e-109 402.1 421 52.0
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 6.6e-109 399.4 698 35.0
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 1.2e-94 352.1 581 38.4
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 4.6e-94 350.1 361 48.2
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 4.5e-89 333.6 410 42.2
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 3.8e-88 330.5 650 33.8
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 9.3e-87 325.9 301 54.5
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 2.5e-84 317.8 304 52.3
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 6.9e-82 309.7 328 47.6
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 9.3e-79 299.3 305 51.1
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 7.9e-78 296.2 292 51.7
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 4.3e-76 290.4 359 39.8
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 1.4e-71 275.4 361 44.9
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 1.3e-69 268.9 820 26.6
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 5.1e-69 266.9 357 39.5
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 2.8e-67 261.2 371 39.9
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 3.7e-67 260.8 185 69.7
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 4.1e-66 257.3 289 48.8
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.0e-64 252.7 422 35.5
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.5e-60 238.8 341 39.3
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 6.3e-59 233.4 725 25.9
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 4.1e-58 230.7 352 38.4
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 3.2e-55 221.1 204 54.4
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 1.2e-54 219.2 641 27.5
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 3.0e-53 214.5 261 41.0
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 6.3e-51 206.8 240 42.5
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.0e-49 201.8 386 33.4
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 3.6e-46 191.0 401 29.7
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 3.6e-46 191.0 229 44.1
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 7.4e-44 183.3 163 55.8
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 9.4e-39 166.4 218 41.3
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 2.6e-36 158.3 126 62.7
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 7.0e-34 150.2 370 29.5
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.7e-33 148.3 281 31.3
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 4.2e-31 141.0 147 51.0
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 5.2e-29 134.0 98 65.3
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 5.7e-28 130.6 129 49.6
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 7.5e-28 130.2 98 59.2
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 3.1e-26 124.8 144 46.5
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 4.5e-25 120.9 129 47.3
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 5.5e-23 114.0 84 61.9
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 5.5e-23 114.0 905 22.2
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 9.5e-23 113.2 162 37.7
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 6.1e-22 110.5 305 30.8
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 8.0e-22 110.2 97 55.7
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 1.4e-21 109.4 242 30.2
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 2.3e-21 108.6 136 41.2
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 2.3e-21 108.6 127 46.5
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 3.4e-20 104.8 79 60.8
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 7.5e-20 103.6 876 19.1
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 3.7e-19 101.3 151 39.7
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 6.3e-19 100.5 110 49.1
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 8.3e-19 100.1 133 41.4
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 1.1e-18 99.8 98 52.0
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.8e-18 99.0 124 39.5
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.8e-14 85.1 112 37.5
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 8.0e-14 83.6 166 31.3
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.4e-13 82.8 102 48.0
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 7.5e-12 77.0 117 31.6
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 9.8e-12 76.6 87 43.7
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.9e-11 75.1 61 54.1
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 1.4e-10 72.8 90 36.7
QL01p054481 Quercus lobata HOM05D003469 ORTHO05D004084 1.5e-07 62.8 48 62.5
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 2.1e-06 58.9 176 25.0
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 4.7e-06 57.8 227 24.7


User provided reference genes

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