Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 1.4e-90 336.3 167 100.0
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 3.5e-46 188.7 160 56.9
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 2.9e-40 169.1 163 50.9
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 2.4e-26 122.9 159 44.0
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 3.1e-26 122.5 148 43.2
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 1.1e-20 104.0 158 41.1
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 1.1e-20 104.0 140 41.4
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 2.6e-20 102.8 158 40.5
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 2.6e-20 102.8 173 39.9
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 3.3e-20 102.4 166 38.0
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 7.4e-20 101.3 156 39.1
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 9.7e-20 100.9 158 39.2
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 9.7e-20 100.9 160 37.5
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 9.7e-20 100.9 138 40.6
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 1.3e-19 100.5 158 39.2
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 1.3e-19 100.5 158 39.2
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 1.3e-19 100.5 142 40.1
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 2.2e-19 99.8 158 39.2
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 2.2e-19 99.8 158 39.2
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 2.2e-19 99.8 158 39.2
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 2.2e-19 99.8 158 39.2
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 2.2e-19 99.8 158 40.5
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 2.2e-19 99.8 168 36.9
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 4.8e-19 98.6 159 39.6
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 4.8e-19 98.6 158 39.2
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 6.3e-19 98.2 158 39.2
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 8.2e-19 97.8 165 37.6
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 8.2e-19 97.8 153 37.3
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 1.1e-18 97.4 144 41.0
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 1.1e-18 97.4 144 41.0
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 1.1e-18 97.4 168 39.9
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 1.1e-18 97.4 161 38.5
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 1.4e-18 97.1 158 37.3
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 1.4e-18 97.1 161 37.9
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 1.8e-18 96.7 161 38.5
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 1.8e-18 96.7 161 38.5
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 1.8e-18 96.7 161 38.5
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 1.8e-18 96.7 138 39.1
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 2.4e-18 96.3 162 38.3
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 3.1e-18 95.9 137 36.5
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 3.1e-18 95.9 158 38.0
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 4.1e-18 95.5 156 37.8
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 4.1e-18 95.5 158 37.3
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 4.1e-18 95.5 152 36.8
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 9.1e-18 94.4 139 40.3
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 9.1e-18 94.4 144 39.6
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 1.2e-17 94.0 138 39.1
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 1.2e-17 94.0 138 39.9
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 1.2e-17 94.0 139 38.1
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 1.6e-17 93.6 139 37.4
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 2.0e-17 93.2 138 39.9
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 2.0e-17 93.2 138 39.9
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 2.0e-17 93.2 147 38.8
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 3.5e-17 92.4 152 34.9
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 4.5e-17 92.0 157 37.6
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 4.5e-17 92.0 156 35.9
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 7.7e-17 91.3 138 39.1
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 1.0e-16 90.9 158 35.4
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 1.3e-16 90.5 163 34.4
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 1.3e-16 90.5 163 34.4
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 1.3e-16 90.5 153 35.9
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 1.7e-16 90.1 172 34.9
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 1.7e-16 90.1 138 37.0
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 2.2e-16 89.7 152 36.2
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 2.9e-16 89.4 156 36.5
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 5.0e-16 88.6 135 40.0
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 5.0e-16 88.6 135 40.0
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 6.5e-16 88.2 139 39.6
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 6.5e-16 88.2 152 34.2
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 6.5e-16 88.2 156 35.3
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 6.5e-16 88.2 156 36.5
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 6.5e-16 88.2 141 39.0
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 8.5e-16 87.8 141 39.7
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 8.5e-16 87.8 159 34.6
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 8.5e-16 87.8 172 34.9
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 1.1e-15 87.4 137 36.5
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 1.1e-15 87.4 141 39.0
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.5e-15 87.0 159 36.5
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 1.9e-15 86.7 156 34.0
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 2.5e-15 86.3 156 35.9
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 3.2e-15 85.9 139 37.4
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 3.2e-15 85.9 138 34.8
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 4.2e-15 85.5 138 37.7
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 4.2e-15 85.5 156 35.9
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 4.2e-15 85.5 158 36.1
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 4.2e-15 85.5 140 37.9
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 5.5e-15 85.1 159 35.2
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 2.1e-14 83.2 152 34.9
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 4.7e-14 82.0 144 34.7
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 6.1e-14 81.6 143 36.4
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 3.0e-13 79.3 152 35.5
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 8.8e-13 77.8 169 30.2
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 8.8e-13 77.8 158 32.9
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 1.2e-12 77.4 123 39.0
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 1.2e-12 77.4 137 36.5
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 1.5e-12 77.0 156 34.0
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 2.0e-12 76.6 173 31.2
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 2.6e-12 76.3 156 34.0
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 7.5e-12 74.7 158 27.2
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 7.5e-12 74.7 138 35.5
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 7.5e-12 74.7 136 36.0
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 1.7e-11 73.6 157 31.8
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 4.8e-11 72.0 157 31.2
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 3.1e-10 69.3 91 40.7
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 4.1e-10 68.9 116 34.5
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 7.0e-10 68.2 94 41.5
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-09 67.0 159 30.8
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 3.5e-09 65.9 148 27.7
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 4.5e-09 65.5 159 30.8
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 5.9e-09 65.1 149 30.9
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 1.5e-07 60.5 102 39.2
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 5.5e-07 58.5 147 29.3
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 7.2e-07 58.2 126 30.2


User provided reference genes

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