Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 0.0e+00 1136.3 575 100.0
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 1.6e-199 699.9 569 62.6
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 3.6e-191 672.2 568 61.8
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 3.6e-183 645.6 567 60.1
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 1.1e-182 644.0 563 60.9
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 3.4e-181 639.0 569 59.4
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 9.9e-181 637.5 568 58.8
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 3.5e-178 629.0 571 58.1
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 4.6e-178 628.6 567 57.7
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 7.9e-178 627.9 566 58.7
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 7.9e-178 627.9 569 58.9
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.3e-177 627.1 571 58.0
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 2.3e-177 626.3 568 57.6
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 8.7e-177 624.4 573 57.4
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 1.1e-176 624.0 568 58.8
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 2.5e-176 622.9 568 58.5
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 5.6e-176 621.7 568 56.5
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 5.6e-176 621.7 564 57.8
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 1.3e-175 620.5 560 57.5
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 2.1e-175 619.8 567 57.7
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 2.8e-175 619.4 563 58.6
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 4.8e-175 618.6 565 57.7
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 8.1e-175 617.8 568 57.2
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 1.1e-174 617.5 555 59.5
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 1.1e-174 617.5 573 56.9
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 2.4e-174 616.3 574 57.8
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 4.0e-174 615.5 572 56.8
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 6.9e-174 614.8 560 58.6
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 9.0e-174 614.4 571 57.3
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 2.6e-173 612.8 567 56.3
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 3.4e-173 612.5 572 57.2
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 4.5e-173 612.1 567 56.8
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 5.8e-173 611.7 572 57.2
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 1.3e-172 610.5 572 56.5
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 1.3e-172 610.5 572 56.3
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 1.7e-172 610.1 567 56.1
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 1.7e-172 610.1 561 58.1
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 2.9e-172 609.4 569 57.5
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 2.9e-172 609.4 567 57.7
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 6.5e-172 608.2 572 56.1
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 6.5e-172 608.2 567 55.9
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 8.4e-172 607.8 575 56.0
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 1.1e-171 607.4 572 56.1
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 1.9e-171 606.7 567 56.3
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 2.5e-171 606.3 582 56.2
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 3.2e-171 605.9 563 57.0
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 4.2e-171 605.5 565 56.6
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 5.5e-171 605.1 570 57.2
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 7.1e-171 604.7 569 55.5
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 9.3e-171 604.4 569 55.5
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 2.1e-170 603.2 579 54.7
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 2.1e-170 603.2 554 58.5
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 7.9e-170 601.3 567 55.6
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 1.8e-169 600.1 569 55.5
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 2.3e-169 599.7 554 57.6
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 5.1e-169 598.6 577 56.2
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 6.7e-169 598.2 561 56.5
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 2.5e-168 596.3 573 56.2
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 7.4e-168 594.7 568 56.3
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 9.6e-168 594.3 577 55.6
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 9.6e-168 594.3 577 56.2
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 2.8e-167 592.8 599 54.1
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 4.8e-167 592.0 567 55.4
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 6.9e-166 588.2 588 54.4
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 1.2e-165 587.4 554 56.1
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 1.5e-165 587.0 571 54.3
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 3.4e-165 585.9 564 56.4
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 2.2e-164 583.2 568 55.1
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 3.8e-164 582.4 570 53.7
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 6.5e-164 581.6 562 56.2
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 5.5e-163 578.6 556 56.7
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 6.1e-162 575.1 562 55.0
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 7.9e-162 574.7 561 56.3
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 1.3e-161 573.9 563 55.1
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 6.7e-161 571.6 632 50.9
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 5.7e-160 568.5 555 55.1
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 7.4e-160 568.2 561 55.1
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 4.8e-159 565.5 550 55.3
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 1.8e-158 563.5 566 53.4
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 1.2e-157 560.8 569 53.8
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 4.5e-157 558.9 577 52.9
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 7.7e-157 558.1 573 53.9
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 2.7e-154 549.7 614 51.3
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 1.0e-153 547.7 539 56.0
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 1.5e-152 543.9 570 53.2
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 6.9e-150 535.0 565 51.0
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 1.4e-147 527.3 585 50.6
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 1.4e-147 527.3 582 52.2
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 3.2e-147 526.2 610 50.8
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 1.8e-145 520.4 520 53.8
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 3.7e-143 512.7 555 53.0
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 8.5e-140 501.5 587 48.7
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 1.2e-133 481.1 428 59.3
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 2.7e-130 469.9 431 57.8
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 3.2e-110 403.3 689 37.0
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 3.5e-85 320.1 324 53.4
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 2.5e-83 313.9 281 59.8
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 3.3e-75 287.0 275 54.5
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 1.6e-66 258.1 303 46.5
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 5.1e-60 236.5 240 51.7
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 1.3e-55 221.9 219 53.9
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 1.4e-54 218.4 167 65.9
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 1.2e-45 188.7 189 52.9
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 3.4e-32 144.1 118 57.6
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 4.5e-32 143.7 185 45.4
SMO228G0126 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 3.2e-30 137.5 187 46.0
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 1.0e-28 132.5 128 54.7
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 6.7e-28 129.8 143 51.0
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 3.3e-27 127.5 128 53.9
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 3.1e-25 120.9 113 56.6
SMO111G0176 Selaginella moellendorffii HOM05D013632 ORTHO05D008295 9.4e-22 109.4 197 37.1
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 2.3e-20 104.8 293 33.1
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 2.6e-19 101.3 108 52.8
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 3.3e-19 100.9 120 51.7
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 3.7e-18 97.4 94 54.3
SMO014G0021 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 4.8e-18 97.1 223 36.3
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.8e-17 95.1 146 43.2
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 3.1e-17 94.4 164 37.8
SMO118G0508 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.7e-16 91.3 222 32.4
SMO009G0006 Selaginella moellendorffii HOM05D013632 ORTHO05D379378 1.0e-15 89.4 159 42.1
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 3.8e-15 87.4 82 53.7
SMO122G0015 Selaginella moellendorffii HOM05D006362 ORTHO05D374567 4.2e-14 84.0 97 46.4
SMO144G0005 Selaginella moellendorffii HOM05D013632 ORTHO05D378182 5.7e-11 73.6 96 42.7
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 7.7e-08 63.2 45 60.0


User provided reference genes

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