Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 0.0e+00 1528.1 781 100.0
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.6e-136 491.1 712 41.7
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 1.9e-105 387.9 753 35.1
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 5.1e-95 353.2 661 36.0
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 5.5e-81 306.6 590 34.1
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 1.1e-70 272.3 716 30.7
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 6.1e-56 223.4 735 27.2
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 7.9e-56 223.0 762 29.4
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 6.3e-53 213.4 715 26.2
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 1.1e-52 212.6 763 27.7
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 1.8e-52 211.8 772 26.3
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 2.4e-52 211.5 739 27.3
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 5.3e-52 210.3 752 28.2
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 5.3e-52 210.3 790 26.3
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 6.9e-52 209.9 734 27.0
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 1.2e-51 209.1 746 27.5
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 2.0e-51 208.4 717 27.6
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 4.5e-51 207.2 732 28.7
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 5.9e-51 206.8 739 26.4
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 7.7e-51 206.5 717 27.2
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 7.7e-51 206.5 749 26.6
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 1.3e-50 205.7 736 27.6
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 1.7e-50 205.3 722 26.7
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 2.2e-50 204.9 736 27.6
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 2.2e-50 204.9 728 26.5
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 6.5e-50 203.4 737 26.2
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 1.1e-49 202.6 748 26.6
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 1.1e-49 202.6 758 26.4
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 1.4e-49 202.2 720 27.2
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 1.9e-49 201.8 740 25.5
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 3.2e-49 201.1 976 24.9
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 4.2e-49 200.7 734 25.7
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 4.2e-49 200.7 699 28.0
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 4.2e-49 200.7 732 27.7
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 9.4e-49 199.5 767 25.9
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 1.2e-48 199.1 706 25.5
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 1.2e-48 199.1 741 26.3
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 1.6e-48 198.7 735 26.5
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 1.6e-48 198.7 726 26.0
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 1.6e-48 198.7 738 26.4
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 2.1e-48 198.4 735 26.4
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 2.1e-48 198.4 719 26.1
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 3.6e-48 197.6 695 26.5
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 3.6e-48 197.6 774 25.3
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 4.7e-48 197.2 740 26.1
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 6.1e-48 196.8 718 27.2
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.0e-47 196.1 748 25.8
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.0e-47 196.1 708 25.7
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 1.8e-47 195.3 770 26.2
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 1.8e-47 195.3 729 26.5
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 1.8e-47 195.3 737 26.1
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 1.8e-47 195.3 770 26.4
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 3.0e-47 194.5 729 25.4
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 3.0e-47 194.5 717 25.5
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 5.2e-47 193.7 697 26.1
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 5.2e-47 193.7 741 26.6
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 5.2e-47 193.7 739 26.3
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 5.2e-47 193.7 683 26.9
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 8.8e-47 193.0 744 26.1
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 8.8e-47 193.0 765 26.9
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 1.1e-46 192.6 734 25.6
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.1e-46 192.6 678 26.7
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.5e-46 192.2 748 25.9
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 2.0e-46 191.8 722 26.5
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.6e-46 191.4 742 25.9
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 3.3e-46 191.0 733 26.2
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 5.7e-46 190.3 698 26.6
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 5.7e-46 190.3 734 26.3
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 7.4e-46 189.9 739 26.4
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 9.7e-46 189.5 723 26.0
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 1.3e-45 189.1 752 25.9
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 1.3e-45 189.1 699 27.6
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 2.2e-45 188.3 733 25.9
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 4.8e-45 187.2 723 25.2
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 8.2e-45 186.4 650 26.6
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 8.2e-45 186.4 735 26.0
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 8.2e-45 186.4 736 26.4
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 1.4e-44 185.7 720 26.0
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 1.4e-44 185.7 730 26.2
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 3.1e-44 184.5 720 26.2
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 3.1e-44 184.5 791 25.9
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 4.1e-44 184.1 717 25.7
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 1.2e-43 182.6 681 25.8
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 1.2e-43 182.6 748 26.1
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 1.6e-43 182.2 678 27.3
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 8.5e-42 176.4 693 26.0
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 1.9e-41 175.3 730 24.5
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 9.4e-41 172.9 457 28.9
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 2.1e-40 171.8 667 26.4
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 4.7e-40 170.6 681 26.4
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 4.0e-39 167.5 878 24.4
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 4.0e-39 167.5 688 24.7
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 2.8e-37 161.4 720 24.0
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 8.2e-37 159.8 732 24.0
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 2.4e-36 158.3 729 23.7
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 2.4e-36 158.3 677 26.7
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 3.1e-36 157.9 720 23.9
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.2e-35 156.0 773 24.2
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 1.5e-33 149.1 521 25.5
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 1.9e-33 148.7 713 24.1
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 2.1e-32 145.2 522 26.1
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 1.8e-31 142.1 792 24.2
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 4.4e-30 137.5 358 28.8
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 1.1e-28 132.9 636 24.7
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 1.1e-28 132.9 513 24.4
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 4.1e-28 131.0 479 26.5
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 5.4e-28 130.6 478 26.2
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 1.0e-26 126.3 446 27.1
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 1.0e-26 126.3 477 24.5
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 3.7e-21 107.8 504 25.6
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 6.3e-21 107.1 400 26.2
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 1.4e-20 105.9 277 29.6
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 1.4e-20 105.9 655 25.0
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.4e-20 105.9 707 24.0
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.1e-20 104.4 307 30.3
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 4.1e-20 104.4 301 29.9
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.2e-19 102.8 388 26.3
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 5.6e-17 94.0 94 52.1
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 1.2e-16 92.8 131 41.2
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 4.7e-16 90.9 304 26.0
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 4.0e-15 87.8 232 28.4
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 2.2e-13 82.0 262 27.1
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 3.7e-13 81.3 109 41.3
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 8.3e-13 80.1 382 23.6
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 1.6e-11 75.9 427 23.4
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.7e-11 75.1 97 41.2
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 6.0e-11 73.9 96 38.5
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.3e-10 72.0 159 34.0
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.3e-10 72.0 159 34.0
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 3.9e-10 71.2 111 38.7
SMO119G0278 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.9e-09 68.9 123 36.6
Cre07.g312150 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 2.5e-09 68.6 84 44.0
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 7.3e-09 67.0 457 23.2
Pp3s70_20 Physcomitrium patens HOM05D002705 ORTHO05D313936 2.1e-08 65.5 328 24.7
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 2.8e-08 65.1 135 32.6
SEGI_17474 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 3.1e-07 61.6 113 36.3
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 8.9e-07 60.1 193 29.0
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 1.5e-06 59.3 122 32.0
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 7.5e-06 57.0 95 35.8
SEGI_14932 Sequoiadendron giganteum HOM05D016114 ORTHO05D017362 9.8e-06 56.6 44 54.5


User provided reference genes

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