Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 2.5e-247 858.2 405 100.0
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 5.4e-157 558.1 372 67.7
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 9.2e-157 557.4 370 68.1
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 9.2e-157 557.4 370 68.1
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 1.2e-156 557.0 368 67.7
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 4.6e-156 555.1 373 67.8
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 1.0e-155 553.9 368 67.7
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 1.3e-155 553.5 372 67.5
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 2.3e-155 552.7 368 67.7
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 2.3e-155 552.7 373 66.0
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 3.0e-155 552.4 370 67.0
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 5.0e-155 551.6 372 66.7
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 6.6e-155 551.2 374 67.1
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 6.6e-155 551.2 366 68.0
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 6.6e-155 551.2 373 65.7
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 6.6e-155 551.2 373 66.5
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 1.9e-154 549.7 372 65.3
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 3.3e-154 548.9 372 65.1
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 5.6e-154 548.1 368 67.4
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 1.6e-153 546.6 374 65.5
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 3.6e-153 545.4 367 67.3
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 3.6e-153 545.4 373 66.2
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 4.7e-153 545.0 370 66.8
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 4.7e-153 545.0 372 65.6
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 4.7e-153 545.0 373 66.2
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 6.2e-153 544.7 368 67.1
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 6.2e-153 544.7 372 65.6
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 8.1e-153 544.3 376 64.6
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 8.1e-153 544.3 374 65.2
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 1.1e-152 543.9 374 64.2
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 1.4e-152 543.5 371 65.8
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 2.3e-152 542.7 376 66.0
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 3.1e-152 542.3 381 65.1
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 4.0e-152 542.0 382 63.9
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 5.2e-152 541.6 375 64.0
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 6.8e-152 541.2 373 66.2
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 8.9e-152 540.8 373 65.4
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 8.9e-152 540.8 374 65.0
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 8.9e-152 540.8 378 64.3
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 1.5e-151 540.0 368 67.1
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 4.4e-151 538.5 376 65.2
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 5.8e-151 538.1 375 65.3
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 5.8e-151 538.1 373 65.1
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 5.8e-151 538.1 369 64.5
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 5.8e-151 538.1 376 64.1
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 7.5e-151 537.7 374 66.3
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 7.5e-151 537.7 373 64.9
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 7.5e-151 537.7 372 63.7
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 7.5e-151 537.7 373 64.6
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 9.9e-151 537.3 373 65.1
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 1.3e-150 537.0 374 65.2
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 1.3e-150 537.0 374 64.4
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 1.7e-150 536.6 373 64.9
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 1.7e-150 536.6 373 65.7
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 2.2e-150 536.2 373 64.9
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 2.2e-150 536.2 373 64.6
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 2.9e-150 535.8 374 63.6
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 2.9e-150 535.8 377 65.5
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 2.9e-150 535.8 370 65.4
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 3.7e-150 535.4 372 64.5
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 4.9e-150 535.0 374 64.7
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 6.4e-150 534.6 373 65.7
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 6.4e-150 534.6 376 65.2
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 8.3e-150 534.3 369 64.8
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 8.3e-150 534.3 375 64.3
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 1.1e-149 533.9 374 65.2
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 1.4e-149 533.5 371 64.4
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 1.4e-149 533.5 373 63.8
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 1.9e-149 533.1 373 64.9
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 1.9e-149 533.1 373 64.3
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 2.4e-149 532.7 374 65.2
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 4.1e-149 531.9 373 64.1
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 5.4e-149 531.6 373 64.3
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 5.4e-149 531.6 382 62.6
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 5.4e-149 531.6 374 65.5
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 7.1e-149 531.2 382 62.3
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 9.2e-149 530.8 376 63.0
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 9.2e-149 530.8 373 64.6
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.2e-148 530.4 374 61.5
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.1e-148 529.6 374 61.5
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 2.1e-148 529.6 380 62.9
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 3.5e-148 528.9 374 65.5
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 3.5e-148 528.9 373 63.0
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 3.5e-148 528.9 373 63.3
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 3.5e-148 528.9 374 62.3
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 6.0e-148 528.1 401 60.1
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 6.0e-148 528.1 373 62.5
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 1.0e-147 527.3 374 63.9
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 1.3e-147 526.9 382 63.4
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 1.7e-147 526.6 374 62.6
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 3.0e-147 525.8 373 62.2
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 1.5e-146 523.5 367 65.1
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 1.9e-146 523.1 369 64.2
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 2.5e-146 522.7 368 65.2
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 3.3e-146 522.3 403 60.8
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 4.3e-146 521.9 371 63.3
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 2.1e-145 519.6 384 62.0
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 4.7e-145 518.5 373 61.4
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 4.7e-145 518.5 373 61.4
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 6.2e-145 518.1 398 60.3
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 8.1e-145 517.7 371 61.7
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.8e-144 516.5 379 62.3
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 2.0e-143 513.1 358 63.4
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 3.4e-143 512.3 349 65.9
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 4.4e-143 511.9 379 61.7
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 4.1e-141 505.4 427 57.1
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 1.0e-139 500.7 461 53.4
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 1.5e-138 496.9 372 62.9
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 3.4e-135 485.7 364 61.0
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.3e-134 483.8 375 58.4
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 3.5e-132 475.7 373 59.5
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 8.7e-131 471.1 372 56.5
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 1.6e-129 466.8 327 63.9
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 2.8e-129 466.1 376 58.8
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 6.2e-129 464.9 384 58.1
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 8.1e-129 464.5 424 54.0
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 2.9e-126 456.1 411 54.5
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 8.4e-118 427.9 309 62.8
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 3.2e-117 426.0 291 63.6
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 2.1e-113 413.3 374 54.5
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 1.2e-108 397.5 267 68.5
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 2.6e-90 336.7 382 46.3
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 7.4e-90 335.1 382 44.8
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 2.0e-87 327.0 388 44.8
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 3.4e-87 326.2 402 44.5
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 2.1e-84 317.0 216 67.1
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 1.5e-82 310.8 344 47.1
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.4e-75 287.7 251 51.8
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 3.0e-75 286.6 224 56.2
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.2e-73 280.4 219 56.6
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 7.5e-66 255.4 373 37.8
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.3e-65 254.6 194 55.7
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 8.3e-65 251.9 162 63.6
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 8.0e-60 235.3 168 60.1
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 1.7e-49 201.1 473 30.7
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 2.2e-49 200.7 173 55.5
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 6.2e-36 156.0 91 71.4
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 1.1e-32 145.2 91 69.2
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 3.2e-32 143.7 91 68.1
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.4e-27 127.5 137 51.1
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 3.2e-24 117.1 78 70.5
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 8.7e-22 109.0 85 58.8
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 1.4e-16 91.7 93 51.6
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 1.5e-13 81.6 43 81.4
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 5.6e-13 79.7 71 54.9
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 5.6e-13 79.7 164 31.1
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 9.6e-13 79.0 47 72.3
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 4.0e-11 73.6 46 71.7
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 1.9e-08 64.7 40 72.5
BraA01t02993Z Brassica rapa HOM05D004692 ORTHO05D006291 3.9e-06 57.0 33 66.7
BraA09t36800Z Brassica rapa HOM05D004692 ORTHO05D006291 3.9e-06 57.0 33 66.7


User provided reference genes

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