Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0015s0130 Marchantia polymorpha HOM05D009562 ORTHO05D010783 6.5e-300 1034.2 1020 100.0
Mapoly0363s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 9.8e-147 525.4 1090 65.4
Mapoly0122s0002 Marchantia polymorpha HOM05D009562 ORTHO05D010783 3.1e-145 520.4 1047 67.4
Mapoly1649s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 3.8e-135 486.9 1030 70.4
Mapoly0122s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 6.1e-133 479.6 1042 65.8
Mapoly0023s0113 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.8e-132 478.0 1015 68.0
Mapoly0268s0002 Marchantia polymorpha HOM05D009562 ORTHO05D010783 8.3e-122 442.6 1037 67.3
Mapoly0137s0035 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.2e-115 422.2 1074 52.4
Mapoly1037s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 4.6e-112 410.2 970 69.8
Mapoly2524s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 3.5e-104 384.0 946 67.5
Mapoly0090s0013 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.6e-101 375.2 562 67.3
Mapoly0160s0033 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.3e-93 349.0 1068 64.7
Mapoly0129s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 2.6e-91 341.3 999 67.6
Mapoly0115s0072 Marchantia polymorpha HOM05D009562 ORTHO05D010783 3.8e-90 337.4 559 66.0
Mapoly0023s0110 Marchantia polymorpha HOM05D009562 ORTHO05D010783 5.3e-84 317.0 996 62.2
Mapoly2608s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 4.5e-75 287.3 1030 44.3
Mapoly1594s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 5.7e-70 270.4 448 77.2
Mapoly1470s0002 Marchantia polymorpha HOM05D009562 ORTHO05D010783 8.2e-53 213.4 252 58.3
Mapoly0647s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 5.3e-52 210.7 245 67.8
Mapoly2877s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.2e-51 209.5 245 67.8
Mapoly3096s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 1.0e-50 206.5 245 66.5
Mapoly1470s0001 Marchantia polymorpha HOM05D009562 ORTHO05D010783 3.2e-49 201.4 437 70.0
Mapoly0211s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 2.2e-34 152.1 974 56.1
Mapoly0118s0002 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.7e-29 136.0 498 54.2
Mapoly0327s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.2e-27 129.8 475 54.7
Mapoly0066s0077 Marchantia polymorpha HOM05D009352 ORTHO05D010783 2.0e-27 129.0 340 52.9
Mapoly0048s0054 Marchantia polymorpha HOM05D009352 ORTHO05D010783 2.3e-26 125.6 346 56.6
Mapoly0049s0035 Marchantia polymorpha HOM05D009352 ORTHO05D010783 3.8e-26 124.8 346 56.9
Mapoly0083s0098 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.4e-23 116.3 334 54.2
Mapoly0056s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 5.2e-23 114.4 357 44.8
Mapoly0006s0310 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.2e-22 113.2 225 52.4
Mapoly3765s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.5e-22 112.8 371 54.7
Mapoly0158s0040 Marchantia polymorpha HOM05D009352 ORTHO05D010783 2.5e-17 95.5 912 55.7
Mapoly0009s0035 Marchantia polymorpha HOM05D009352 ORTHO05D010783 5.6e-17 94.4 97 50.5
Mapoly0158s0041 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.2e-16 93.2 311 40.2
Mapoly0006s0272 Marchantia polymorpha HOM05D009352 ORTHO05D010783 4.7e-16 91.3 116 44.0
Mapoly0118s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 3.0e-15 88.6 71 59.2
Mapoly0263s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 9.2e-12 77.0 246 45.1
Mapoly0693s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 4.6e-11 74.7 244 46.3
Mapoly0580s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 2.3e-10 72.4 237 46.4
Mapoly0633s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 6.6e-10 70.9 226 47.8
CARHR175480 Cardamine hirsuta HOM05D000021 ORTHO05D000010 1.1e-09 70.1 79 43.0
Aa31sc309G10 Aethionema arabicum HOM05D000021 ORTHO05D000010 3.3e-09 68.6 79 44.3
Thhalv10000746m.g Eutrema salsugineum HOM05D000021 ORTHO05D000010 4.3e-09 68.2 79 43.0
Mapoly0015s0098 Marchantia polymorpha HOM05D009562 ORTHO05D048722 4.3e-09 68.2 43 79.1
Mapoly2142s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 5.6e-09 67.8 226 47.3
BcaB07g30842 Brassica carinata HOM05D000021 ORTHO05D000010 9.5e-09 67.0 84 40.5
BcaC04g21710 Brassica carinata HOM05D000021 ORTHO05D000010 9.5e-09 67.0 70 41.4
C09p28410 Brassica napus HOM05D000021 ORTHO05D000010 9.5e-09 67.0 70 41.4
BolC9t55719H Brassica oleracea HOM05D000021 ORTHO05D000010 9.5e-09 67.0 70 41.4
A09p22240 Brassica napus HOM05D000021 ORTHO05D000010 1.2e-08 66.6 70 41.4
MELO3C007675.2 Cucumis melo HOM05D000029 ORTHO05D000854 1.2e-08 66.6 69 43.5
CsaV3_6G044530 Cucumis sativus L. HOM05D000029 ORTHO05D000854 1.2e-08 66.6 69 43.5
Rhsim10G0084900 Rhododendron simsii HOM05D000029 ORTHO05D008832 1.6e-08 66.2 69 46.4
Prupe.6G212200 Prunus persica HOM05D000029 ORTHO05D000854 2.1e-08 65.9 82 41.5
AT5G46330 Arabidopsis thaliana HOM05D000021 ORTHO05D000010 2.8e-08 65.5 80 40.0
BraA09t37828Z Brassica rapa HOM05D000021 ORTHO05D000010 3.6e-08 65.1 70 40.0
BcaC03g16847 Brassica carinata HOM05D000021 ORTHO05D000010 4.7e-08 64.7 85 38.8
Sed0014573 Sechium edule HOM05D000029 ORTHO05D000854 8.0e-08 63.9 69 43.5
BolC2t10770H Brassica oleracea HOM05D000021 ORTHO05D000010 1.1e-07 63.5 70 41.4
Mapoly1150s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 1.4e-07 63.2 212 48.1
Aa31LG9G6570 Aethionema arabicum HOM05D000021 ORTHO05D000010 1.8e-07 62.8 79 40.5
A02p29860 Brassica napus HOM05D000021 ORTHO05D000010 1.8e-07 62.8 70 41.4
BraA02t08007Z Brassica rapa HOM05D000021 ORTHO05D000010 1.8e-07 62.8 70 41.4
HanXRQChr02g0057581 Helianthus annuus HOM05D000071 ORTHO05D000029 1.8e-07 62.8 74 45.9
SMO147G0088 Selaginella moellendorffii HOM05D025607 ORTHO05D008832 1.8e-07 62.8 74 44.6
AL8G12090 Arabidopsis lyrata HOM05D000021 ORTHO05D000010 2.3e-07 62.4 70 40.0
DCAR_010771 Daucus carota HOM05D000029 ORTHO05D000854 2.3e-07 62.4 83 34.9
Mapoly0125s0050 Marchantia polymorpha HOM05D009562 ORTHO05D048722 2.3e-07 62.4 50 64.0
Nitab4.5_0004219g0010 Nicotiana tabacum HOM05D000029 ORTHO05D000854 2.3e-07 62.4 64 40.6
SpUn0734_0010 Schrenkiella parvula HOM05D000021 ORTHO05D018350 2.3e-07 62.4 79 39.2
TPR.G22419 Trifolium pratense HOM05D000029 ORTHO05D000854 2.3e-07 62.4 81 42.0
Medtr4g097880 Medicago truncatula HOM05D000029 ORTHO05D000854 3.1e-07 62.0 69 46.4
Potri.013G020900 Populus trichocarpa HOM05D000021 ORTHO05D000010 3.1e-07 62.0 84 41.7
RcHm_v2.0_Chr2g0109581 Rosa chinensis HOM05D000029 ORTHO05D000854 3.1e-07 62.0 91 36.3
Eucgr.L01229 Eucalyptus grandis HOM05D000021 ORTHO05D000010 4.0e-07 61.6 68 48.5
Carub.0008s0158 Capsella rubella HOM05D000021 ORTHO05D000010 5.2e-07 61.2 70 40.0
Os12g0620000 Oryza sativa ssp. japonica HOM05D000021 ORTHO05D000010 5.2e-07 61.2 93 41.9
MD02G1194600 Malus domestica HOM05D000029 ORTHO05D000854 6.8e-07 60.8 78 41.0
Mapoly0025s0062 Marchantia polymorpha HOM05D009562 ORTHO05D017073 6.8e-07 60.8 70 41.4
Cpa.g.sc129.40 Carica papaya HOM05D000029 ORTHO05D000854 8.9e-07 60.5 83 36.1
ClCG01G018010 Citrullus lanatus HOM05D000029 ORTHO05D000854 8.9e-07 60.5 69 42.0
Mapoly1854s0001 Marchantia polymorpha HOM05D009352 ORTHO05D010783 8.9e-07 60.5 191 50.3
Sed0019229 Sechium edule HOM05D009562 ORTHO05D008832 8.9e-07 60.5 72 43.1
HanXRQChr07g0200541 Helianthus annuus HOM05D000021 ORTHO05D000010 1.2e-06 60.1 68 47.1
Ciclev10013307m.g Citrus clementina HOM05D000021 ORTHO05D000010 1.5e-06 59.7 84 40.5
Ciclev10013815m.g Citrus clementina HOM05D000021 ORTHO05D000010 1.5e-06 59.7 84 40.5
PSO732G0269 Papaver somniferum HOM05D000021 ORTHO05D000010 1.5e-06 59.7 69 46.4
Potri.005G030800 Populus trichocarpa HOM05D000021 ORTHO05D000010 1.5e-06 59.7 84 39.3
PGSC0003DMG402005482 Solanum tuberosum HOM05D000021 ORTHO05D000010 1.5e-06 59.7 84 40.5
CARHR206210 Cardamine hirsuta HOM05D000029 ORTHO05D008567 2.0e-06 59.3 71 40.8
Ciclev10010969m.g Citrus clementina HOM05D000021 ORTHO05D000010 2.0e-06 59.3 73 42.5
Cc04_g12300 Coffea canephora HOM05D007589 ORTHO05D009610 2.0e-06 59.3 80 40.0
Migut.G01044 Erythranthe guttata HOM05D000021 ORTHO05D000010 2.0e-06 59.3 82 41.5
HanXRQChr02g0057651 Helianthus annuus HOM05D001705 ORTHO05D002725 2.0e-06 59.3 74 44.6
Manes.06G031500 Manihot esculenta HOM05D000021 ORTHO05D000010 2.0e-06 59.3 70 45.7
Potri.005G031300 Populus trichocarpa HOM05D000021 ORTHO05D000010 2.0e-06 59.3 84 39.3
Sabra16G0055300 Salix brachista HOM05D000029 ORTHO05D008567 2.0e-06 59.3 71 42.3
Ah.02g124560 Amaranthus hybridus HOM05D002919 ORTHO05D003327 2.6e-06 58.9 54 50.0
HanXRQChr02g0057531 Helianthus annuus HOM05D000071 ORTHO05D000029 2.6e-06 58.9 74 45.9
Lj4C171T2 Lonicera japonica HOM05D000029 ORTHO05D000854 2.6e-06 58.9 80 35.0
Os02g0609900 Oryza sativa ssp. japonica HOM05D000021 ORTHO05D000010 2.6e-06 58.9 67 50.7
PSO675G0241 Papaver somniferum HOM05D000021 ORTHO05D000010 2.6e-06 58.9 89 41.6
Hund19173 Selenicereus undatus HOM05D000029 ORTHO05D008567 2.6e-06 58.9 77 41.6
SEGI_31013 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 2.6e-06 58.9 73 37.0
HPP92_018942 Vanilla planifolia HOM05D000021 ORTHO05D000010 2.6e-06 58.9 69 49.3
CAN.G1061.9 Capsicum annuum HOM05D000029 ORTHO05D000854 3.4e-06 58.5 84 35.7
Cfa006806 Carpinus fangiana HOM05D000029 ORTHO05D000854 3.4e-06 58.5 85 41.2
Ciclev10013426m.g Citrus clementina HOM05D000021 ORTHO05D000010 3.4e-06 58.5 84 39.3
Eucgr.F04390 Eucalyptus grandis HOM05D000021 ORTHO05D000010 3.4e-06 58.5 68 47.1
LjContig00357g0014932 Lotus japonicus HOM05D000021 ORTHO05D000010 3.4e-06 58.5 66 47.0
Nn1g04224 Nelumbo nucifera HOM05D000021 ORTHO05D000010 3.4e-06 58.5 70 45.7
Rhsim08G0088900 Rhododendron simsii HOM05D000029 ORTHO05D000854 3.4e-06 58.5 82 35.4
vmacro08143 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 3.4e-06 58.5 68 45.6
arahy.Tifrunner.gnm1.ann1.QK0Y39 Arachis hypogaea HOM05D000021 ORTHO05D000010 4.4e-06 58.2 68 47.1
arahy.Tifrunner.gnm1.ann1.RAB7YL Arachis hypogaea HOM05D000021 ORTHO05D000010 4.4e-06 58.2 68 47.1
Ciclev10024610m.g Citrus clementina HOM05D000021 ORTHO05D000010 4.4e-06 58.2 71 40.8
Haze_03953 Corylus avellana HOM05D000029 ORTHO05D000854 4.4e-06 58.2 85 41.2
Haze_19921 Corylus avellana HOM05D000029 ORTHO05D008567 4.4e-06 58.2 84 39.3
Eucgr.B02130 Eucalyptus grandis HOM05D000021 ORTHO05D000010 4.4e-06 58.2 68 47.1
MD15G1304900 Malus domestica HOM05D000029 ORTHO05D000854 4.4e-06 58.2 65 44.6
Os04g0122200 Oryza sativa ssp. japonica HOM05D000021 ORTHO05D000010 4.4e-06 58.2 73 41.1
Prupe.1G459200 Prunus persica HOM05D000021 ORTHO05D000010 4.4e-06 58.2 93 36.6
Solyc03g096190.2 Solanum lycopersicum HOM05D000021 ORTHO05D000010 4.4e-06 58.2 80 43.8
CSS0034441 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 5.8e-06 57.8 102 38.2
Cc10_g16350 Coffea canephora HOM05D001705 ORTHO05D002725 5.8e-06 57.8 72 44.4
Eucgr.B01137 Eucalyptus grandis HOM05D000021 ORTHO05D000010 5.8e-06 57.8 66 48.5
Eucgr.C00631 Eucalyptus grandis HOM05D000021 ORTHO05D000010 5.8e-06 57.8 83 37.3
Lsat_1_v5_gn_2_107620 Lactuca sativa HOM05D000021 ORTHO05D000010 5.8e-06 57.8 71 45.1
PSO210G6616 Papaver somniferum HOM05D000021 ORTHO05D000010 5.8e-06 57.8 69 44.9
Thecc.10G022300 Theobroma cacao HOM05D000021 ORTHO05D000010 5.8e-06 57.8 67 50.7
arahy.Tifrunner.gnm1.ann1.D6BAN0 Arachis hypogaea HOM05D000029 ORTHO05D000854 7.5e-06 57.4 89 40.4
CAN.G787.16 Capsicum annuum HOM05D000021 ORTHO05D000010 7.5e-06 57.4 84 39.3
ClCG01G018020 Citrullus lanatus HOM05D000029 ORTHO05D000854 7.5e-06 57.4 80 38.8
Eucgr.I00635 Eucalyptus grandis HOM05D000029 ORTHO05D000854 7.5e-06 57.4 71 42.3
FAN03G0659 Fragaria x ananassa HOM05D000021 ORTHO05D000010 7.5e-06 57.4 85 37.6
Prupe.4G064400 Prunus persica HOM05D000021 ORTHO05D000010 7.5e-06 57.4 68 47.1
SalBow1G0785 Salvia bowleyana HOM05D000021 ORTHO05D000010 7.5e-06 57.4 74 43.2
SEGI_20356 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 7.5e-06 57.4 73 38.4
TAR633G0591 Trochodendron aralioides HOM05D000021 ORTHO05D000010 7.5e-06 57.4 68 45.6
vmacro09201 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 7.5e-06 57.4 68 45.6
VMungo0251G3020 Vigna mungo HOM05D000029 ORTHO05D000854 7.5e-06 57.4 83 41.0
GSVIVG01000055001 Vitis vinifera HOM05D000021 ORTHO05D000010 7.5e-06 57.4 71 40.8
GSVIVG01000058001 Vitis vinifera HOM05D000052 ORTHO05D000046 7.5e-06 57.4 71 40.8
Atru.chr2.929 Acer truncatum HOM05D000021 ORTHO05D000010 9.8e-06 57.0 68 42.6
CARHR205990 Cardamine hirsuta HOM05D000761 ORTHO05D021521 9.8e-06 57.0 102 36.3
Eucgr.G00456 Eucalyptus grandis HOM05D000021 ORTHO05D000010 9.8e-06 57.0 68 47.1
Medtr5g025180 Medicago truncatula HOM05D000021 ORTHO05D000010 9.8e-06 57.0 84 38.1
PSO566G0053 Papaver somniferum HOM05D000021 ORTHO05D000010 9.8e-06 57.0 68 48.5
PSO566G0122 Papaver somniferum HOM05D000021 ORTHO05D000010 9.8e-06 57.0 68 48.5
PSO782G2414 Papaver somniferum HOM05D000021 ORTHO05D000010 9.8e-06 57.0 68 47.1
Potri.005G031700 Populus trichocarpa HOM05D000021 ORTHO05D000010 9.8e-06 57.0 84 36.9
Potri.016G051600 Populus trichocarpa HOM05D000029 ORTHO05D008567 9.8e-06 57.0 71 39.4


User provided reference genes

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