Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 4.6e-170 601.3 338 100.0
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 2.1e-66 256.9 221 63.8
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 5.5e-62 242.3 270 52.6
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 9.0e-57 224.9 211 56.9
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 1.9e-54 217.2 203 58.1
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 3.6e-53 213.0 213 53.1
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 1.0e-52 211.5 215 52.6
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 1.0e-52 211.5 215 52.6
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 1.3e-52 211.1 194 54.6
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 2.3e-52 210.3 236 49.2
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 2.3e-52 210.3 183 57.4
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 3.0e-52 209.9 195 54.9
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 3.0e-52 209.9 183 58.5
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 3.9e-52 209.5 188 57.4
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 3.9e-52 209.5 195 56.4
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 5.1e-52 209.1 213 51.6
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 6.7e-52 208.8 188 56.4
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 6.7e-52 208.8 189 57.1
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 8.7e-52 208.4 227 49.3
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 8.7e-52 208.4 189 56.1
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 8.7e-52 208.4 207 52.7
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 1.1e-51 208.0 264 45.8
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 1.5e-51 207.6 206 51.9
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 1.9e-51 207.2 212 52.8
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 1.9e-51 207.2 213 53.5
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 2.5e-51 206.8 213 51.6
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 2.5e-51 206.8 188 56.4
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 2.5e-51 206.8 182 56.6
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 4.3e-51 206.1 195 54.9
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 4.3e-51 206.1 195 54.9
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 4.3e-51 206.1 210 52.4
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 4.3e-51 206.1 289 43.3
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 4.3e-51 206.1 189 56.6
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 4.3e-51 206.1 231 49.8
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 4.3e-51 206.1 183 56.3
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 5.7e-51 205.7 195 54.9
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 5.7e-51 205.7 188 56.4
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 7.4e-51 205.3 195 53.3
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 7.4e-51 205.3 182 56.6
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 7.4e-51 205.3 183 56.3
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 7.4e-51 205.3 281 44.8
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 7.4e-51 205.3 281 44.5
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 7.4e-51 205.3 183 56.8
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 7.4e-51 205.3 219 59.8
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 9.7e-51 204.9 207 52.2
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 9.7e-51 204.9 193 53.9
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 9.7e-51 204.9 207 52.2
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 9.7e-51 204.9 214 52.8
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 1.3e-50 204.5 195 52.3
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 1.3e-50 204.5 210 52.4
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 1.7e-50 204.1 237 48.9
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 2.8e-50 203.4 218 49.5
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 2.8e-50 203.4 196 54.6
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 2.8e-50 203.4 225 49.8
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 3.7e-50 203.0 210 52.4
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 3.7e-50 203.0 186 56.5
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 3.7e-50 203.0 261 46.0
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 4.8e-50 202.6 209 52.2
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 4.8e-50 202.6 193 53.4
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 4.8e-50 202.6 183 55.7
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 4.8e-50 202.6 185 56.2
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 4.8e-50 202.6 227 50.7
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 6.3e-50 202.2 210 51.9
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 6.3e-50 202.2 210 51.9
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 6.3e-50 202.2 182 57.1
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 8.2e-50 201.8 212 52.8
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 8.2e-50 201.8 194 55.2
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 8.2e-50 201.8 204 52.5
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 1.1e-49 201.4 186 56.5
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 1.4e-49 201.1 182 55.5
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 1.4e-49 201.1 214 50.9
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 1.4e-49 201.1 195 52.3
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 1.4e-49 201.1 186 55.9
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 1.8e-49 200.7 210 51.9
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 1.8e-49 200.7 196 58.2
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 1.8e-49 200.7 212 53.3
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 1.8e-49 200.7 299 45.2
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 1.8e-49 200.7 186 55.9
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 2.4e-49 200.3 193 52.3
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 2.4e-49 200.3 186 55.4
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 3.1e-49 199.9 194 54.6
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 4.1e-49 199.5 226 50.0
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 4.1e-49 199.5 207 50.7
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 5.3e-49 199.1 233 48.5
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 5.3e-49 199.1 182 56.0
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 6.9e-49 198.7 183 54.1
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 6.9e-49 198.7 195 51.3
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 9.1e-49 198.4 194 53.1
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 9.1e-49 198.4 207 50.7
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 9.1e-49 198.4 231 48.5
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 1.5e-48 197.6 239 49.0
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.0e-48 197.2 183 55.2
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 2.0e-48 197.2 183 55.2
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.6e-48 196.8 201 52.2
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 2.6e-48 196.8 185 54.6
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 4.5e-48 196.1 183 54.6
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 4.5e-48 196.1 183 54.6
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 4.5e-48 196.1 294 41.2
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 4.5e-48 196.1 220 50.0
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 5.9e-48 195.7 205 52.2
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 1.0e-47 194.9 212 57.5
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 1.0e-47 194.9 201 51.7
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 1.3e-47 194.5 237 48.5
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 1.7e-47 194.1 227 47.6
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 2.2e-47 193.7 164 60.4
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 3.8e-47 193.0 198 52.0
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 1.9e-46 190.7 198 51.5
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 4.2e-46 189.5 206 58.3
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 2.1e-45 187.2 201 49.8
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 7.9e-45 185.3 214 48.1
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 1.0e-44 184.9 235 44.7
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 6.7e-44 182.2 158 55.1
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 2.6e-43 180.3 180 50.6
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 2.2e-39 167.2 348 34.5
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 3.2e-38 163.3 176 46.6
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 5.2e-36 156.0 213 44.1
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 2.2e-34 150.6 148 52.0
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 7.7e-32 142.1 194 43.8
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 4.0e-28 129.8 141 58.9
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.7e-26 124.4 126 53.2
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 5.4e-17 92.8 76 61.8
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 3.5e-16 90.1 129 41.9
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 4.0e-12 76.6 53 67.9
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 1.7e-10 71.2 144 36.1
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 9.5e-06 55.5 47 61.7


User provided reference genes

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