Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0014s0070 Marchantia polymorpha HOM05D007345 ORTHO05D009277 2.3e-168 595.5 305 100.0
Pp3c11_25980 Physcomitrium patens HOM05D007345 ORTHO05D009277 2.2e-62 243.4 206 58.3
AagrBONN_evm.TU.Sc2ySwM_117.2683 Anthoceros agrestis HOM05D007345 ORTHO05D009277 1.9e-61 240.4 155 73.5
SMO352G0035 Selaginella moellendorffii HOM05D007345 ORTHO05D009277 3.7e-57 226.1 217 53.0
CBR_g52222 Chara braunii HOM05D007345 ORTHO05D009277 7.6e-55 218.4 200 53.5
TAR629G0192 Trochodendron aralioides HOM05D007345 ORTHO05D009277 4.3e-50 202.6 206 47.6
TAR629G2718 Trochodendron aralioides HOM05D007345 ORTHO05D009277 7.4e-50 201.8 206 47.6
TAR485G0005 Trochodendron aralioides HOM05D007345 ORTHO05D009277 2.4e-48 196.8 206 46.6
Aqoxy3G04287 Aquilegia oxysepala HOM05D007345 ORTHO05D009277 5.3e-48 195.7 215 49.3
Sc10g0008500 Simmondsia chinensis HOM05D007345 ORTHO05D009277 1.5e-47 194.1 215 46.5
GSVIVG01029370001 Vitis vinifera HOM05D007345 ORTHO05D009277 5.9e-47 192.2 204 49.0
Thecc.03G072800 Theobroma cacao HOM05D007345 ORTHO05D009277 1.7e-46 190.7 213 45.1
COL.COLO4_05810 Corchorus olitorius HOM05D007345 ORTHO05D009277 2.2e-46 190.3 207 46.4
Cpa.g.sc111.41 Carica papaya HOM05D007345 ORTHO05D009277 2.9e-46 189.9 208 47.6
HanXRQChr13g0409411 Helianthus annuus HOM05D007345 ORTHO05D009277 8.5e-46 188.3 206 47.1
HPP92_025754 Vanilla planifolia HOM05D007345 ORTHO05D009277 1.4e-45 187.6 207 47.8
Dinv13291 Davidia involucrata HOM05D007345 ORTHO05D009277 1.9e-45 187.2 204 47.5
SEGI_13495 Sequoiadendron giganteum HOM05D007345 ORTHO05D009277 2.5e-45 186.8 180 53.3
HPP92_025712 Vanilla planifolia HOM05D007345 ORTHO05D009277 2.5e-45 186.8 207 47.8
Lsat_1_v5_gn_3_108980 Lactuca sativa HOM05D007345 ORTHO05D009277 3.2e-45 186.4 215 46.0
Migut.D02059 Erythranthe guttata HOM05D007345 ORTHO05D009277 5.5e-45 185.7 216 47.2
PSO782G0509 Papaver somniferum HOM05D007345 ORTHO05D009277 5.5e-45 185.7 206 47.1
Cfa017791 Carpinus fangiana HOM05D007345 ORTHO05D009277 1.2e-44 184.5 212 45.3
Glyma.05G249000 Glycine max HOM05D007345 ORTHO05D009277 1.2e-44 184.5 209 47.4
Ciclev10021617m.g Citrus clementina HOM05D007345 ORTHO05D009277 2.1e-44 183.7 205 44.4
RcHm_v2.0_Chr7g0177311 Rosa chinensis HOM05D007345 ORTHO05D009277 2.7e-44 183.3 207 47.3
CiPaw.16G072000 Carya illinoinensis HOM05D007345 ORTHO05D009277 3.6e-44 183.0 214 46.3
FAN08G2921 Fragaria x ananassa HOM05D007345 ORTHO05D009277 6.1e-44 182.2 206 46.1
arahy.Tifrunner.gnm1.ann1.TRXD5D Arachis hypogaea HOM05D007345 ORTHO05D009277 7.9e-44 181.8 213 44.1
arahy.Tifrunner.gnm1.ann1.X12NHK Arachis hypogaea HOM05D007345 ORTHO05D009277 7.9e-44 181.8 213 44.1
Sp3g15810 Schrenkiella parvula HOM05D007345 ORTHO05D009277 7.9e-44 181.8 227 42.7
FAN18G3356 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.3e-43 181.0 206 46.1
Sed0020487 Sechium edule HOM05D007345 ORTHO05D009277 1.3e-43 181.0 210 43.8
CDE05G0430 Ceratophyllum demersum HOM05D007345 ORTHO05D009277 2.3e-43 180.3 213 43.7
PGR083G0906 Punica granatum HOM05D007345 ORTHO05D009277 3.0e-43 179.9 205 46.8
Hma1.2p1_0403F.1_g145230 Hydrangea macrophylla HOM05D007345 ORTHO05D009277 6.7e-43 178.7 208 45.7
unitig_0.g26 Utricularia gibba HOM05D007345 ORTHO05D009277 6.7e-43 178.7 213 43.7
FAN04G1809 Fragaria x ananassa HOM05D007345 ORTHO05D009277 8.7e-43 178.3 209 45.0
CAN.G1909.2 Capsicum annuum HOM05D007345 ORTHO05D009277 1.1e-42 177.9 209 43.5
Eucgr.H00620 Eucalyptus grandis HOM05D007345 ORTHO05D009277 1.1e-42 177.9 207 44.9
AUR62033076 Chenopodium quinoa HOM05D007345 ORTHO05D009277 1.5e-42 177.6 209 43.5
Actinidia35146 Actinidia chinensis HOM05D007345 ORTHO05D009277 2.5e-42 176.8 208 44.2
FvH4_5g18270 Fragaria vesca HOM05D007345 ORTHO05D009277 3.3e-42 176.4 198 47.0
Atru.chr9.353 Acer truncatum HOM05D007345 ORTHO05D009277 4.3e-42 176.0 209 43.5
Haze_18424 Corylus avellana HOM05D007345 ORTHO05D009277 4.3e-42 176.0 202 46.0
Potri.015G029700 Populus trichocarpa HOM05D007345 ORTHO05D009277 4.3e-42 176.0 234 41.5
CANSAT01G1136 Cannabis sativa HOM05D007345 ORTHO05D009277 5.7e-42 175.6 210 43.8
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 7.4e-42 175.3 219 42.0
Ca_17167_v3 Cicer arietinum L. HOM05D007345 ORTHO05D009277 9.7e-42 174.9 236 41.5
EL10Ac8g19438 Beta vulgaris HOM05D007345 ORTHO05D009277 1.3e-41 174.5 209 43.5
CsaV3_1G005120 Cucumis sativus L. HOM05D007345 ORTHO05D009277 1.3e-41 174.5 213 42.7
AT3G17670 Arabidopsis thaliana HOM05D007345 ORTHO05D009277 1.7e-41 174.1 221 41.2
SalBow1G0799 Salvia bowleyana HOM05D007345 ORTHO05D009277 2.2e-41 173.7 232 42.2
Prupe.5G242200 Prunus persica HOM05D007345 ORTHO05D009277 2.8e-41 173.3 224 44.2
SGA_v2.0_scaffold164G38118 Striga asiatica HOM05D007345 ORTHO05D009277 2.8e-41 173.3 208 47.1
TWI60G0762 Tripterygium wilfordii HOM05D007345 ORTHO05D009277 2.8e-41 173.3 208 45.2
Lalb_Chr09g0330151 Lupinus albus HOM05D007345 ORTHO05D009277 3.7e-41 172.9 208 43.8
Phvul.002G333600 Phaseolus vulgaris HOM05D007345 ORTHO05D009277 4.8e-41 172.6 206 44.7
Cc00_g18760 Coffea canephora HOM05D007345 ORTHO05D009277 6.3e-41 172.2 213 45.5
Sabra15G0024900 Salix brachista HOM05D007345 ORTHO05D009277 6.3e-41 172.2 231 42.0
BraA05t22048Z Brassica rapa HOM05D007345 ORTHO05D009277 1.1e-40 171.4 218 41.3
CSS0049327 Camellia sinensis var. sinensis HOM05D007345 ORTHO05D009277 1.1e-40 171.4 222 43.2
Nitab4.5_0000782g0230 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.1e-40 171.4 207 44.9
Medtr3g015440 Medicago truncatula HOM05D007345 ORTHO05D009277 1.4e-40 171.0 204 44.6
AL3G30780 Arabidopsis lyrata HOM05D007345 ORTHO05D009277 1.8e-40 170.6 221 40.3
Nitab4.5_0004612g0070 Nicotiana tabacum HOM05D000066 ORTHO05D000003 1.8e-40 170.6 202 45.5
Oeu061194.1 Olea europaea HOM05D007345 ORTHO05D009277 1.8e-40 170.6 210 43.3
Sopen03g029180 Solanum pennellii HOM05D007345 ORTHO05D009277 2.4e-40 170.2 211 44.1
C05p48720 Brassica napus HOM05D007345 ORTHO05D009277 3.1e-40 169.9 209 42.1
BolC5t33608H Brassica oleracea HOM05D007345 ORTHO05D009277 3.1e-40 169.9 209 42.1
CARHR093010 Cardamine hirsuta HOM05D007345 ORTHO05D009277 4.1e-40 169.5 221 40.3
Peaxi162Scf00171g00331 Petunia axillaris HOM05D007345 ORTHO05D009277 4.1e-40 169.5 201 45.3
Solyc03g098440.4 Solanum lycopersicum HOM05D007345 ORTHO05D009277 4.1e-40 169.5 211 43.6
Nn4g24918 Nelumbo nucifera HOM05D007345 ORTHO05D009277 5.3e-40 169.1 155 53.5
Rhsim12G0136700 Rhododendron simsii HOM05D007345 ORTHO05D009277 5.3e-40 169.1 196 45.4
LjContig00484g0026271 Lotus japonicus HOM05D007345 ORTHO05D009277 9.1e-40 168.3 210 45.2
Lj5A166T75 Lonicera japonica HOM05D007345 ORTHO05D009277 1.2e-39 167.9 198 43.9
MD06G1238300 Malus domestica HOM05D007345 ORTHO05D009277 1.5e-39 167.5 217 43.8
BcaB06g25825 Brassica carinata HOM05D007345 ORTHO05D009277 2.0e-39 167.2 218 40.8
A05p32180 Brassica napus HOM05D007345 ORTHO05D009277 2.0e-39 167.2 218 40.4
Carub.0003s1739 Capsella rubella HOM05D007345 ORTHO05D009277 5.9e-39 165.6 221 39.4
Manes.02G214200 Manihot esculenta HOM05D007345 ORTHO05D009277 1.0e-38 164.9 208 42.3
Thhalv10021436m.g Eutrema salsugineum HOM05D007345 ORTHO05D009277 2.9e-38 163.3 221 38.9
AUR62034041 Chenopodium quinoa HOM05D007345 ORTHO05D009277 9.4e-37 158.3 219 42.5
ATR0618G142 Amborella trichopoda HOM05D007345 ORTHO05D009277 1.2e-36 157.9 204 39.7
Os04g0674100 Oryza sativa ssp. japonica HOM05D007345 ORTHO05D009277 2.7e-36 156.8 220 40.9
ClCG04G012580 Citrullus lanatus HOM05D007345 ORTHO05D009277 7.9e-36 155.2 242 37.2
Zm00001eb066530 Zea mays HOM05D007345 ORTHO05D009277 3.9e-35 152.9 227 39.2
VMungo0251G1758 Vigna mungo HOM05D007345 ORTHO05D009277 1.5e-34 151.0 218 41.3
DCAR_023255 Daucus carota HOM05D007345 ORTHO05D009277 8.2e-33 145.2 184 44.6
Ah.09g231730 Amaranthus hybridus HOM05D007345 ORTHO05D009277 1.6e-28 131.0 196 40.3
PGSC0003DMG400010180 Solanum tuberosum HOM05D007345 ORTHO05D009277 2.1e-28 130.6 306 30.7
ECA240G0690 Erigeron canadensis HOM05D007345 ORTHO05D009277 3.6e-28 129.8 169 42.0
Cre16.g674534 Chlamydomonas reinhardtii HOM05D007345 ORTHO05D009277 8.0e-28 128.6 196 35.7
vmacro16392 Vaccinium macrocarpon HOM05D007345 ORTHO05D009277 1.3e-25 121.3 125 48.8
PSO063G1698 Papaver somniferum HOM05D007345 ORTHO05D009277 1.1e-24 118.2 206 35.0
Psat7g000360 Pisum sativum HOM05D007345 ORTHO05D009277 1.4e-24 117.9 124 49.2
Lj9C350T12 Lonicera japonica HOM05D000001 ORTHO05D009373 3.1e-24 116.7 150 44.0
CAN.G1635.20 Capsicum annuum HOM05D007345 ORTHO05D009277 4.5e-23 112.8 210 33.8
MELO3C001950.2 Cucumis melo HOM05D007345 ORTHO05D009277 7.7e-23 112.1 138 40.6
Zm00001eb184330 Zea mays HOM05D007345 ORTHO05D009277 1.0e-19 101.7 158 39.2
FAN13G2172 Fragaria x ananassa HOM05D007345 ORTHO05D009277 6.7e-19 99.0 144 41.0
MSTRG.9709 Avicennia marina HOM05D007345 ORTHO05D009277 8.8e-19 98.6 143 39.9
Eucgr.H00622 Eucalyptus grandis HOM05D007345 ORTHO05D009277 1.4e-11 74.7 92 39.1
PRCOL_00001636 Prasinoderma coloniale HOM05D007345 ORTHO05D009277 8.8e-11 72.0 51 58.8
PRCOL_00005247 Prasinoderma coloniale HOM05D006451 ORTHO05D001755 1.7e-09 67.8 88 42.0
PRCOL_00004533 Prasinoderma coloniale HOM05D001714 ORTHO05D044203 2.2e-09 67.4 127 39.4
CBR_g18988 Chara braunii HOM05D006451 ORTHO05D007680 4.1e-08 63.2 122 34.4
Os12g0636100 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 7.0e-08 62.4 107 32.7
Glyma.02G004400 Glycine max HOM05D006451 ORTHO05D007680 3.5e-07 60.1 118 33.1
MCO13G488 Micromonas commoda HOM05D000062 ORTHO05D000043 3.5e-07 60.1 133 30.1
CDE10G0543 Ceratophyllum demersum HOM05D006451 ORTHO05D007680 1.0e-06 58.5 143 33.6
PGR042G3651 Punica granatum HOM05D002462 ORTHO05D002893 1.0e-06 58.5 111 37.8
Sed0008444 Sechium edule HOM05D002462 ORTHO05D002893 1.0e-06 58.5 105 34.3
CBR_g6631 Chara braunii HOM05D002462 ORTHO05D002893 2.3e-06 57.4 117 33.3
CsaV3_2G013500 Cucumis sativus L. HOM05D006451 ORTHO05D007680 2.3e-06 57.4 116 31.9
Potri.008G156500 Populus trichocarpa HOM05D006451 ORTHO05D007680 2.3e-06 57.4 118 33.1
Thhalv10016164m.g Eutrema salsugineum HOM05D002345 ORTHO05D002391 2.9e-06 57.0 101 30.7
Gohir.A13G217200 Gossypium hirsutum HOM05D002345 ORTHO05D002391 2.9e-06 57.0 116 31.0
Lalb_Chr01g0020941 Lupinus albus HOM05D006451 ORTHO05D007680 2.9e-06 57.0 119 31.9
Os03g0680566 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 2.9e-06 57.0 117 34.2
CDE10G0598 Ceratophyllum demersum HOM05D006451 ORTHO05D007680 3.8e-06 56.6 129 33.3
Ca_12151_v3 Cicer arietinum L. HOM05D006451 ORTHO05D007680 3.8e-06 56.6 118 32.2
Glyma.10G003800 Glycine max HOM05D006451 ORTHO05D007680 3.8e-06 56.6 121 30.6
Lj6g0024617 Lotus japonicus HOM05D006451 ORTHO05D007680 3.8e-06 56.6 118 32.2
Nitab4.5_0011829g0020 Nicotiana tabacum HOM05D002345 ORTHO05D002391 3.8e-06 56.6 130 30.0
Peaxi162Scf00004g03717 Petunia axillaris HOM05D002345 ORTHO05D002391 3.8e-06 56.6 161 28.6
CARHR136650 Cardamine hirsuta HOM05D002345 ORTHO05D002391 5.0e-06 56.2 101 30.7
PGR031G0384 Punica granatum HOM05D002462 ORTHO05D002893 5.0e-06 56.2 105 34.3
TPR.G25159 Trifolium pratense HOM05D006451 ORTHO05D007680 5.0e-06 56.2 118 32.2
MSTRG.4055 Avicennia marina HOM05D006451 ORTHO05D007680 6.5e-06 55.8 118 31.4
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 6.5e-06 55.8 129 31.0
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 6.5e-06 55.8 129 31.0
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 6.5e-06 55.8 129 31.0
BraA08t35607Z Brassica rapa HOM05D006451 ORTHO05D007680 6.5e-06 55.8 129 31.0
CiPaw.01G196900 Carya illinoinensis HOM05D006451 ORTHO05D007680 6.5e-06 55.8 121 30.6
CiPaw.13G154100 Carya illinoinensis HOM05D002345 ORTHO05D002391 6.5e-06 55.8 157 29.9
HanXRQChr13g0401431 Helianthus annuus HOM05D002345 ORTHO05D002391 6.5e-06 55.8 125 31.2
Sabra08G0119100 Salix brachista HOM05D006451 ORTHO05D007680 6.5e-06 55.8 118 32.2
AUR62004900 Chenopodium quinoa HOM05D001789 ORTHO05D001755 8.6e-06 55.5 111 32.4
Os02g0494400 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 8.6e-06 55.5 109 33.0


User provided reference genes

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