Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 1.3e-176 623.2 384 100.0
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 3.6e-70 269.6 279 54.1
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 3.9e-64 249.6 284 47.9
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 5.1e-64 249.2 279 54.8
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 8.7e-64 248.4 288 49.7
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 8.7e-64 248.4 272 54.4
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 1.5e-63 247.7 284 48.9
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 2.5e-63 246.9 284 51.8
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 4.3e-63 246.1 287 49.8
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 5.6e-63 245.7 308 50.3
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 7.3e-63 245.4 242 52.9
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 9.6e-63 245.0 291 50.9
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 1.6e-62 244.2 284 51.4
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 1.6e-62 244.2 285 50.5
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 2.1e-62 243.8 285 52.3
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 3.6e-62 243.0 284 49.3
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 6.2e-62 242.3 308 47.7
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 6.2e-62 242.3 287 49.1
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 6.2e-62 242.3 283 45.9
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 8.1e-62 241.9 293 46.1
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 1.8e-61 240.7 312 47.8
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 1.8e-61 240.7 267 51.3
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 2.4e-61 240.4 283 53.0
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 2.4e-61 240.4 283 50.5
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 2.4e-61 240.4 284 48.9
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 2.4e-61 240.4 279 46.6
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 4.0e-61 239.6 280 55.4
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 4.0e-61 239.6 283 50.5
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 4.0e-61 239.6 321 45.2
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 4.0e-61 239.6 287 48.4
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 6.9e-61 238.8 286 48.3
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 9.0e-61 238.4 297 49.2
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.2e-60 238.0 274 47.8
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 1.2e-60 238.0 293 47.4
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 1.2e-60 238.0 199 58.8
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 1.2e-60 238.0 284 51.8
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 1.5e-60 237.7 280 50.0
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 2.0e-60 237.3 276 52.5
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 2.0e-60 237.3 284 48.9
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 2.6e-60 236.9 248 49.2
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 7.6e-60 235.3 283 49.5
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 7.6e-60 235.3 315 45.4
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 7.6e-60 235.3 279 47.0
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 1.7e-59 234.2 286 55.6
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 2.2e-59 233.8 310 44.8
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 2.9e-59 233.4 323 49.8
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 4.9e-59 232.6 281 45.6
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 4.9e-59 232.6 283 51.6
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 6.4e-59 232.3 292 48.6
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 1.1e-58 231.5 248 48.8
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 1.4e-58 231.1 208 54.8
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 1.9e-58 230.7 283 49.5
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 1.9e-58 230.7 317 43.8
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 2.4e-58 230.3 285 52.6
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 2.4e-58 230.3 206 54.9
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 2.4e-58 230.3 285 50.5
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 2.4e-58 230.3 279 50.5
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 3.2e-58 229.9 289 44.3
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 3.2e-58 229.9 280 56.1
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 5.4e-58 229.2 286 50.0
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 5.4e-58 229.2 199 53.3
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 7.1e-58 228.8 203 56.2
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 9.3e-58 228.4 209 56.0
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 9.3e-58 228.4 280 55.7
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 9.3e-58 228.4 286 43.7
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 9.3e-58 228.4 279 55.9
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 1.6e-57 227.6 199 54.8
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 1.6e-57 227.6 283 53.4
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 1.6e-57 227.6 244 49.6
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 2.1e-57 227.3 202 54.0
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 2.7e-57 226.9 242 52.9
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 3.5e-57 226.5 203 55.7
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 1.0e-56 224.9 266 52.6
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 1.0e-56 224.9 289 52.6
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 1.0e-56 224.9 289 49.5
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 1.3e-56 224.6 283 53.4
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 1.8e-56 224.2 282 44.7
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 1.8e-56 224.2 215 51.6
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 3.0e-56 223.4 202 53.5
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 5.1e-56 222.6 283 52.7
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 5.1e-56 222.6 196 54.6
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 5.1e-56 222.6 203 54.7
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 5.1e-56 222.6 203 54.7
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 6.7e-56 222.2 186 56.5
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 1.1e-55 221.5 201 54.7
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 1.9e-55 220.7 283 53.4
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.5e-55 220.3 199 55.3
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 4.3e-55 219.5 267 56.9
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 4.3e-55 219.5 267 56.9
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 7.4e-55 218.8 289 55.0
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 7.4e-55 218.8 289 55.0
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 9.6e-55 218.4 267 56.6
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 1.3e-54 218.0 267 55.8
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 2.1e-54 217.2 203 52.7
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 2.8e-54 216.9 264 52.3
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 6.2e-54 215.7 208 51.4
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 1.4e-53 214.5 305 50.8
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 3.1e-53 213.4 201 51.2
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 3.1e-53 213.4 246 50.8
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 6.9e-53 212.2 285 42.5
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 2.0e-52 210.7 346 42.2
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 2.6e-52 210.3 202 52.0
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 7.6e-52 208.8 283 45.9
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 9.9e-52 208.4 257 44.0
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 9.9e-52 208.4 239 50.2
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 9.9e-52 208.4 231 48.5
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 2.9e-51 206.8 202 48.5
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 1.1e-50 204.9 202 48.5
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 1.1e-50 204.9 236 49.6
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 5.5e-50 202.6 250 42.4
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 7.9e-49 198.7 215 47.0
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 1.5e-47 194.5 283 47.7
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 7.4e-47 192.2 240 56.2
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 3.7e-46 189.9 233 44.2
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 3.1e-45 186.8 164 54.9
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 1.3e-43 181.4 308 40.3
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 3.3e-39 166.8 124 62.9
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 1.1e-37 161.8 176 46.0
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.2e-36 158.3 310 33.2
Mapoly0177s0002 Marchantia polymorpha HOM05D005493 ORTHO05D007154 8.5e-35 152.1 88 95.5
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 1.9e-34 151.0 111 64.9
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 7.9e-33 145.6 124 54.8
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 2.0e-28 131.0 237 41.8
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-27 127.5 205 37.6
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 5.5e-26 122.9 97 61.9
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 5.5e-26 122.9 99 60.6
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 1.4e-24 118.2 196 33.7
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 6.3e-14 82.8 152 50.7
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 8.2e-14 82.4 181 29.3
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 1.1e-13 82.0 72 56.9
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 4.1e-13 80.1 251 24.3
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.6e-12 78.2 147 32.0
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.0e-11 75.5 183 31.1
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 3.6e-09 67.0 205 29.8
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 8.8e-08 62.4 96 32.3
AagrBONN_evm.TU.Sc2ySwM_344.1611 Anthoceros agrestis HOM05D005493 ORTHO05D076168 8.2e-06 55.8 42 57.1
PRCOL_00005492 Prasinoderma coloniale HOM05D005493 ORTHO05D333432 8.2e-06 55.8 191 23.6


User provided reference genes

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