Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 2.4e-72 275.4 141 100.0
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 7.4e-45 184.1 129 75.2
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 8.4e-41 170.6 122 70.5
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 4.2e-40 168.3 120 65.8
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 4.2e-40 168.3 118 72.0
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 4.2e-40 168.3 126 67.5
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 7.1e-40 167.5 123 69.1
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 7.1e-40 167.5 118 69.5
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 7.1e-40 167.5 122 69.7
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 7.1e-40 167.5 118 72.0
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 7.1e-40 167.5 119 68.9
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 9.3e-40 167.2 130 65.4
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 9.3e-40 167.2 123 64.2
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 9.3e-40 167.2 124 68.5
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.2e-39 166.8 118 71.2
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.2e-39 166.8 118 72.9
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 1.2e-39 166.8 118 71.2
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 1.2e-39 166.8 126 66.7
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 1.2e-39 166.8 122 63.9
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 1.2e-39 166.8 120 67.5
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.6e-39 166.4 118 72.0
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 1.6e-39 166.4 118 68.6
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 1.6e-39 166.4 118 69.5
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 2.1e-39 166.0 118 72.0
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 2.1e-39 166.0 118 68.6
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 2.1e-39 166.0 118 69.5
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 2.7e-39 165.6 118 70.3
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 2.7e-39 165.6 133 60.9
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 2.7e-39 165.6 118 69.5
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 3.5e-39 165.2 118 71.2
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 3.5e-39 165.2 118 69.5
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 3.5e-39 165.2 118 69.5
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 3.5e-39 165.2 118 69.5
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 3.5e-39 165.2 118 69.5
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 3.5e-39 165.2 133 62.4
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 4.6e-39 164.9 128 66.4
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 4.6e-39 164.9 125 66.4
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 4.6e-39 164.9 123 66.7
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 7.9e-39 164.1 118 69.5
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 7.9e-39 164.1 118 69.5
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 7.9e-39 164.1 127 66.9
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 7.9e-39 164.1 132 63.6
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 7.9e-39 164.1 132 63.6
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 7.9e-39 164.1 132 63.6
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 7.9e-39 164.1 125 64.8
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.0e-38 163.7 118 69.5
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.0e-38 163.7 118 69.5
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 1.0e-38 163.7 118 69.5
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 1.0e-38 163.7 118 67.8
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 1.0e-38 163.7 118 64.4
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 1.0e-38 163.7 124 67.7
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 1.3e-38 163.3 118 69.5
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 1.8e-38 162.9 118 68.6
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 1.8e-38 162.9 122 68.0
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 1.8e-38 162.9 118 70.3
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 2.3e-38 162.5 126 66.7
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 2.3e-38 162.5 126 67.5
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 2.3e-38 162.5 118 70.3
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 2.3e-38 162.5 126 65.1
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 5.1e-38 161.4 126 65.1
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 5.1e-38 161.4 118 70.3
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 8.7e-38 160.6 123 66.7
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 8.7e-38 160.6 123 65.0
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 1.1e-37 160.2 122 63.1
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.1e-37 160.2 118 72.0
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 1.1e-37 160.2 124 65.3
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 1.1e-37 160.2 116 69.8
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 1.1e-37 160.2 118 69.5
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 1.5e-37 159.8 125 63.2
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 1.5e-37 159.8 125 63.2
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 1.9e-37 159.5 125 62.4
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 1.9e-37 159.5 125 62.4
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 1.9e-37 159.5 125 62.4
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 1.9e-37 159.5 125 62.4
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 2.5e-37 159.1 116 69.0
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 2.5e-37 159.1 119 68.9
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 3.3e-37 158.7 123 65.0
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 3.3e-37 158.7 126 62.7
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 3.3e-37 158.7 126 62.7
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 3.3e-37 158.7 122 68.0
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 3.3e-37 158.7 127 63.0
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 4.3e-37 158.3 122 64.8
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 4.3e-37 158.3 125 61.6
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 4.3e-37 158.3 125 63.2
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 4.3e-37 158.3 125 61.6
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 4.3e-37 158.3 122 64.8
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 4.3e-37 158.3 125 61.6
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 4.3e-37 158.3 118 66.1
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 5.7e-37 157.9 125 62.4
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 5.7e-37 157.9 125 61.6
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 1.3e-36 156.8 125 60.8
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 1.3e-36 156.8 126 65.9
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 1.6e-36 156.4 125 60.8
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 1.6e-36 156.4 126 61.9
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 2.1e-36 156.0 122 63.9
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 2.8e-36 155.6 116 66.4
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 3.7e-36 155.2 127 59.8
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 1.1e-35 153.7 118 64.4
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 1.1e-35 153.7 118 64.4
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 1.4e-35 153.3 125 61.6
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 1.8e-35 152.9 125 62.4
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 6.9e-35 151.0 118 64.4
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 6.9e-35 151.0 146 57.5
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 6.9e-35 151.0 142 54.2
CBR_g30254 Chara braunii HOM05D005002 ORTHO05D006016 4.2e-32 141.7 110 63.6
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 4.6e-31 138.3 115 62.6
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 3.9e-30 135.2 123 56.1
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 3.9e-30 135.2 100 70.0
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 3.9e-30 135.2 102 64.7
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 8.7e-30 134.0 99 70.7
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 1.5e-29 133.3 100 67.0
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 1.5e-29 133.3 100 67.0
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 1.5e-29 133.3 119 56.3
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 2.5e-29 132.5 100 67.0
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 2.5e-29 132.5 109 66.1
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 3.3e-29 132.1 100 69.0
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 5.7e-29 131.3 100 67.0
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 1.3e-28 130.2 118 56.8
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 2.2e-28 129.4 107 60.7
SMO356G0735 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 2.8e-28 129.0 116 53.4
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 6.3e-28 127.9 102 63.7
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 1.9e-24 116.3 124 55.6
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 9.4e-24 114.0 99 59.6
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 2.1e-23 112.8 111 55.0
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 6.7e-22 107.8 118 55.1
PRCOL_00006189 Prasinoderma coloniale HOM05D005002 ORTHO05D006016 4.4e-21 105.1 134 41.8
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 4.8e-20 101.7 70 62.9
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 1.8e-19 99.8 63 68.3
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 4.1e-19 98.6 175 37.7
MCO01G145 Micromonas commoda HOM05D005002 ORTHO05D006016 4.1e-19 98.6 112 48.2
Duzib168G1591 Durio zibethinus HOM05D005002 ORTHO05D006016 5.3e-19 98.2 81 67.9
COL.COLO4_19003 Corchorus olitorius HOM05D005002 ORTHO05D006016 7.7e-18 94.4 76 65.8
RcHm_v2.0_Chr2g0161711 Rosa chinensis HOM05D005002 ORTHO05D006016 1.7e-17 93.2 76 69.7
CARHR239610 Cardamine hirsuta HOM05D005002 ORTHO05D006016 2.2e-17 92.8 81 64.2
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 6.5e-17 91.3 85 55.3
MSTRG.9875 Avicennia marina HOM05D005002 ORTHO05D006016 8.5e-17 90.9 76 68.4
Duzib187G1493 Durio zibethinus HOM05D005002 ORTHO05D006016 4.2e-16 88.6 79 63.3
MBI15_g18374_MAGBIO Magnolia biondii HOM05D005002 ORTHO05D006016 3.9e-14 82.0 127 40.2
Cre16.g657000 Chlamydomonas reinhardtii HOM05D005002 ORTHO05D006016 3.7e-12 75.5 120 35.0
SEGI_02469 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 4.8e-12 75.1 65 60.0
FAN27G2219 Fragaria x ananassa HOM05D005002 ORTHO05D006016 8.2e-12 74.3 45 68.9
Lalb_Chr08g0233961 Lupinus albus HOM05D005002 ORTHO05D006016 8.2e-12 74.3 66 51.5
CiPaw.15G092700 Carya illinoinensis HOM05D005002 ORTHO05D006016 1.8e-11 73.2 47 70.2
Lalb_Chr08g0233981 Lupinus albus HOM05D005002 ORTHO05D006016 1.8e-11 73.2 58 67.2
FAN20G1660 Fragaria x ananassa HOM05D005002 ORTHO05D006016 3.1e-11 72.4 41 73.2
COL.COLO4_27723 Corchorus olitorius HOM05D005002 ORTHO05D006016 1.6e-10 70.1 41 68.3
QL12p013723 Quercus lobata HOM05D005002 ORTHO05D006016 1.6e-10 70.1 62 66.1
Nitab4.5_0000668g0030 Nicotiana tabacum HOM05D005002 ORTHO05D006016 4.5e-10 68.6 55 67.3
Phvul.009G222000 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 1.7e-09 66.6 73 50.7
EL10Ac5g10893 Beta vulgaris HOM05D005002 ORTHO05D006016 3.8e-09 65.5 41 65.9
Actinidia25736 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.4e-06 57.0 80 38.8
HanXRQChr14g0435251 Helianthus annuus HOM05D005002 ORTHO05D006016 2.3e-06 56.2 65 46.2


User provided reference genes

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