Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 6.2e-188 661.0 428 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 1.1e-72 278.1 239 71.5
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 2.2e-68 263.8 337 55.5
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 6.1e-58 229.2 239 62.8
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 3.0e-57 226.9 240 61.7
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 5.7e-56 222.6 239 63.6
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 9.7e-56 221.9 239 60.3
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 4.8e-55 219.5 239 62.8
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 3.1e-54 216.9 252 59.9
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 9.1e-54 215.3 239 62.3
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 2.0e-53 214.2 315 51.7
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 2.0e-53 214.2 338 49.4
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 2.6e-53 213.8 330 51.5
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 4.5e-53 213.0 302 52.3
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 7.7e-53 212.2 333 50.5
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 7.7e-53 212.2 291 51.5
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 1.0e-52 211.8 324 51.2
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 1.3e-52 211.5 298 54.0
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 2.2e-52 210.7 239 59.0
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 2.9e-52 210.3 336 48.5
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 6.5e-52 209.1 338 48.2
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 8.5e-52 208.8 337 48.7
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 8.5e-52 208.8 329 50.8
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 1.1e-51 208.4 329 50.5
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 1.4e-51 208.0 330 50.3
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 2.5e-51 207.2 237 59.1
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 2.5e-51 207.2 297 52.5
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.2e-51 206.8 301 52.8
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 5.5e-51 206.1 279 53.4
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 5.5e-51 206.1 290 51.4
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 7.2e-51 205.7 342 49.4
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 9.4e-51 205.3 239 59.4
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 1.2e-50 204.9 302 51.0
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.2e-50 204.9 327 47.7
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 1.6e-50 204.5 320 50.3
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 3.6e-50 203.4 328 48.5
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 3.6e-50 203.4 326 50.0
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 6.1e-50 202.6 323 48.9
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 6.1e-50 202.6 239 57.3
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 6.1e-50 202.6 239 56.5
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 1.0e-49 201.8 325 50.5
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 1.8e-49 201.1 342 48.0
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 1.8e-49 201.1 340 46.8
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.0e-49 200.3 323 48.6
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 3.0e-49 200.3 288 50.3
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 3.9e-49 199.9 328 47.3
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 6.7e-49 199.1 278 51.8
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 8.8e-49 198.7 321 50.2
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 8.8e-49 198.7 334 48.8
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 1.1e-48 198.4 365 45.2
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 1.5e-48 198.0 320 49.4
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 2.6e-48 197.2 321 48.6
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 3.3e-48 196.8 239 55.2
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 4.4e-48 196.4 317 47.3
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 5.7e-48 196.1 299 47.8
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 5.7e-48 196.1 238 56.7
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 9.7e-48 195.3 235 57.0
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 9.7e-48 195.3 304 51.6
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 1.3e-47 194.9 278 51.1
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 3.7e-47 193.4 239 55.2
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 4.8e-47 193.0 281 51.2
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 8.2e-47 192.2 292 47.9
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 1.4e-46 191.4 280 51.4
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 3.1e-46 190.3 275 51.3
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 3.1e-46 190.3 309 47.2
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 5.3e-46 189.5 329 48.3
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 7.0e-46 189.1 236 55.5
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 9.1e-46 188.7 239 53.1
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 9.1e-46 188.7 237 54.9
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 2.0e-45 187.6 275 50.9
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 2.0e-45 187.6 332 48.5
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 2.6e-45 187.2 209 58.4
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 3.5e-45 186.8 304 48.7
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 4.5e-45 186.4 229 55.0
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 5.9e-45 186.0 309 48.2
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 7.7e-45 185.7 228 54.4
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 1.0e-44 185.3 240 53.3
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 1.3e-44 184.9 229 53.7
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 1.7e-44 184.5 318 48.4
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.8e-44 183.3 244 54.5
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 5.0e-44 183.0 239 51.9
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 6.5e-44 182.6 229 54.1
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 6.5e-44 182.6 229 52.8
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 6.5e-44 182.6 229 54.1
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 8.5e-44 182.2 285 51.6
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 1.1e-43 181.8 320 47.5
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.5e-43 180.6 334 46.7
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 3.2e-43 180.3 299 48.5
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 5.5e-43 179.5 239 55.2
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 5.5e-43 179.5 323 46.1
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 9.4e-43 178.7 252 51.2
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 2.7e-42 177.2 229 54.1
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 4.7e-42 176.4 214 55.6
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 4.7e-42 176.4 214 55.6
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 4.7e-42 176.4 214 55.6
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 8.0e-42 175.6 214 55.6
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 8.0e-42 175.6 169 63.3
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 8.0e-42 175.6 319 45.1
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 8.0e-42 175.6 227 53.7
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 1.0e-41 175.3 277 48.4
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 3.0e-41 173.7 226 57.1
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 5.2e-41 172.9 221 52.5
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 5.2e-41 172.9 221 52.5
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 1.5e-40 171.4 205 57.1
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.5e-40 171.4 299 47.5
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.0e-40 171.0 299 47.2
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 5.7e-40 169.5 214 53.7
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 1.7e-39 167.9 221 52.0
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 2.2e-39 167.5 239 52.7
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 3.7e-39 166.8 327 45.0
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 6.3e-39 166.0 213 52.1
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 4.1e-38 163.3 318 43.7
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 5.3e-38 162.9 299 46.5
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 5.3e-38 162.9 214 53.3
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.7e-36 157.9 215 53.0
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 6.5e-36 156.0 239 49.8
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 6.5e-36 156.0 239 49.0
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.9e-35 154.5 236 49.6
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 5.5e-35 152.9 323 40.6
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 1.2e-34 151.8 214 50.0
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 2.1e-34 151.0 229 50.7
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 2.7e-34 150.6 323 39.3
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 8.8e-33 145.6 238 47.1
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 3.4e-32 143.7 144 61.1
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 5.4e-30 136.3 211 46.0
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 3.5e-29 133.7 160 53.1
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 1.3e-28 131.7 134 59.0
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 3.8e-28 130.2 324 39.2
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.9e-27 127.9 180 51.1
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 3.4e-24 117.1 161 52.2
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 5.7e-24 116.3 158 50.0
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 2.7e-21 107.5 174 47.1
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 7.2e-19 99.4 174 44.3
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 8.9e-17 92.4 145 49.7
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.1e-14 85.5 69 69.6
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 3.9e-12 77.0 109 52.3
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 8.0e-10 69.3 172 34.3
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 1.4e-09 68.6 119 42.0
Cre10.g452600 Chlamydomonas reinhardtii HOM05D004913 ORTHO05D006150 2.6e-08 64.3 223 31.4
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 3.4e-08 63.9 87 49.4


User provided reference genes

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