Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 3.2e-273 944.5 479 100.0
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 1.9e-156 556.6 479 57.4
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 2.6e-150 536.2 480 58.5
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 9.0e-135 484.6 478 50.6
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 2.9e-133 479.6 478 50.2
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 5.1e-130 468.8 477 49.3
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 1.6e-128 463.8 477 49.1
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 3.6e-128 462.6 484 48.1
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 3.6e-128 462.6 483 48.7
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 3.6e-128 462.6 477 48.8
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 3.6e-128 462.6 478 48.3
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 1.4e-127 460.7 478 48.3
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 1.8e-127 460.3 477 48.6
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 3.1e-127 459.5 478 47.1
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 3.1e-127 459.5 478 48.5
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 6.9e-127 458.4 492 47.4
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 1.2e-126 457.6 484 47.5
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 1.5e-126 457.2 490 48.4
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 1.5e-126 457.2 490 48.4
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 2.6e-126 456.4 490 48.2
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 1.3e-125 454.1 476 48.1
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 1.3e-125 454.1 479 48.2
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 4.9e-125 452.2 477 48.6
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 8.4e-125 451.4 484 47.7
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 2.4e-124 449.9 484 47.5
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 3.2e-124 449.5 478 47.3
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 4.2e-124 449.1 481 46.6
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 2.1e-123 446.8 479 47.6
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 2.1e-123 446.8 485 46.0
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 1.0e-122 444.5 482 46.9
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 1.3e-122 444.1 480 46.5
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 1.8e-122 443.7 476 47.9
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 2.3e-122 443.4 481 47.2
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 3.9e-122 442.6 527 45.2
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 5.1e-122 442.2 480 47.7
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 1.5e-121 440.7 478 46.2
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 1.5e-121 440.7 482 47.5
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 1.9e-121 440.3 482 46.5
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 3.3e-121 439.5 478 46.7
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 9.6e-121 438.0 478 46.7
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 1.6e-120 437.2 484 45.9
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 4.8e-120 435.6 478 46.2
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 6.2e-120 435.3 478 45.6
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 8.1e-120 434.9 478 45.8
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 1.1e-119 434.5 500 44.0
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 1.4e-119 434.1 480 46.0
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 1.8e-119 433.7 497 44.5
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 3.1e-119 433.0 478 47.1
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 3.1e-119 433.0 490 45.3
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 4.0e-119 432.6 490 45.1
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 9.0e-119 431.4 480 45.6
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 1.2e-118 431.0 478 46.0
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 1.5e-118 430.6 478 46.7
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 3.4e-118 429.5 478 44.8
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 3.4e-118 429.5 477 48.0
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 7.6e-118 428.3 489 45.8
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 7.6e-118 428.3 478 45.4
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 1.0e-117 427.9 478 45.4
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 1.3e-117 427.6 478 45.6
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 1.7e-117 427.2 478 44.8
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 1.7e-117 427.2 515 44.7
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 1.7e-117 427.2 478 45.6
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 1.6e-115 420.6 520 42.5
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 2.1e-115 420.2 478 45.6
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 5.1e-114 415.6 554 40.1
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 1.1e-113 414.5 478 45.2
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 1.5e-113 414.1 370 53.2
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 1.6e-112 410.6 477 45.5
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 3.7e-112 409.5 461 47.3
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 3.4e-110 402.9 488 43.9
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 2.5e-108 396.7 479 44.9
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 3.2e-108 396.4 582 38.1
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 3.9e-106 389.4 474 42.4
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 2.2e-104 383.6 499 43.5
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 4.1e-103 379.4 468 44.0
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 1.5e-102 377.5 478 43.5
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 3.8e-101 372.9 324 55.6
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 3.8e-101 372.9 578 38.4
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 6.1e-99 365.5 463 42.8
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 7.9e-99 365.2 461 43.2
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 5.7e-97 359.0 436 44.5
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 2.4e-95 353.6 432 42.8
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 1.2e-94 351.3 367 49.6
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 8.2e-88 328.6 496 39.5
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 2.7e-83 313.5 305 49.2
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 2.7e-83 313.5 491 38.1
SMO069G0001 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 1.1e-79 301.6 229 58.1
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 4.5e-78 296.2 385 41.0
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 4.2e-76 289.7 386 43.0
GSVIVG01025850001 Vitis vinifera HOM05D006173 ORTHO05D007685 2.7e-75 287.0 209 62.7
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 1.5e-68 264.6 433 37.4
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 1.8e-66 257.7 247 48.2
MD14G1101100 Malus domestica HOM05D006173 ORTHO05D007685 5.2e-66 256.1 203 59.1
Lalb_Chr22g0358001 Lupinus albus HOM05D006173 ORTHO05D007685 5.7e-65 252.7 197 57.4
ATR0307G134 Amborella trichopoda HOM05D006173 ORTHO05D007685 7.5e-65 252.3 199 57.3
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 7.5e-65 252.3 432 36.1
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 8.3e-64 248.8 281 45.6
RcHm_v2.0_Chr1g0329271 Rosa chinensis HOM05D006173 ORTHO05D007685 1.1e-63 248.4 202 57.4
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 4.1e-63 246.5 367 36.8
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 9.2e-63 245.4 245 47.8
QL07p014498 Quercus lobata HOM05D006173 ORTHO05D007685 5.0e-61 239.6 185 57.8
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 7.5e-57 225.7 465 35.7
ATR0307G100 Amborella trichopoda HOM05D006173 ORTHO05D007685 3.3e-52 210.3 260 43.5
RcHm_v2.0_Chr1g0329281 Rosa chinensis HOM05D006173 ORTHO05D007685 2.9e-48 197.2 260 40.0
HPP92_002170 Vanilla planifolia HOM05D006173 ORTHO05D007685 2.9e-48 197.2 211 46.4
FAN03G1994 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.6e-46 191.4 268 39.6
Lalb_Chr22g0357991 Lupinus albus HOM05D006173 ORTHO05D007685 2.7e-46 190.7 260 39.6
Lj1A24G66 Lonicera japonica HOM05D006173 ORTHO05D007685 8.1e-43 179.1 152 56.6
unitig_46.g18486 Utricularia gibba HOM05D006173 ORTHO05D007685 8.1e-43 179.1 202 46.5
CANSAT64G0701 Cannabis sativa HOM05D006173 ORTHO05D007685 1.1e-42 178.7 134 59.0
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 4.6e-38 163.3 243 39.9
Solyc08g036600.3 Solanum lycopersicum HOM05D006173 ORTHO05D007685 1.3e-37 161.8 241 39.0
MD14G1101000 Malus domestica HOM05D006173 ORTHO05D007685 2.3e-37 161.0 278 35.6
Lj1A24G67 Lonicera japonica HOM05D006173 ORTHO05D007685 8.1e-35 152.5 283 35.3
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 4.4e-33 146.7 181 44.2
PRCOL_00002577 Prasinoderma coloniale HOM05D006173 ORTHO05D007685 4.9e-32 143.3 276 30.8
Nitab4.5_0000275g0010 Nicotiana tabacum HOM05D006173 ORTHO05D007685 8.6e-29 132.5 87 66.7
TAR623G0990 Trochodendron aralioides HOM05D006173 ORTHO05D007685 7.3e-28 129.4 97 61.9
QL07p014493 Quercus lobata HOM05D006173 ORTHO05D007685 1.1e-26 125.6 210 33.8
GSVIVG01025851001 Vitis vinifera HOM05D006173 ORTHO05D007685 3.4e-25 120.6 206 35.4
SGA_v2.0_scaffold106G30559 Striga asiatica HOM05D000268 ORTHO05D000261 1.7e-24 118.2 264 32.2
MCO12G281 Micromonas commoda HOM05D006173 ORTHO05D007685 6.0e-22 109.8 406 24.1
Nitab4.5_0000211g0140 Nicotiana tabacum HOM05D006173 ORTHO05D007685 5.1e-21 106.7 84 61.9
Nitab4.5_0003840g0030 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.4e-18 98.6 70 64.3
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 2.3e-13 81.3 218 29.4
Lj2A730T35 Lonicera japonica HOM05D006173 ORTHO05D007685 1.9e-07 61.6 51 51.0
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 2.4e-07 61.2 48 54.2
Glyma.17G165900 Glycine max HOM05D002634 ORTHO05D003100 9.3e-07 59.3 119 27.7
Glyma.05G100500 Glycine max HOM05D002634 ORTHO05D003100 1.6e-06 58.5 119 27.7
MD15G1290400 Malus domestica HOM05D002634 ORTHO05D003100 2.1e-06 58.2 237 23.6
Cre10.g466300 Chlamydomonas reinhardtii HOM05D006173 ORTHO05D007685 6.0e-06 56.6 119 32.8
Os12g0131300 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 7.9e-06 56.2 48 52.1


User provided reference genes

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