Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0010s0010 Marchantia polymorpha HOM05D005952 ORTHO05D007262 1.7e-224 782.7 500 100.0
Pp3c10_15930 Physcomitrium patens HOM05D005952 ORTHO05D007262 2.2e-107 393.7 492 54.9
Pp3c10_15937 Physcomitrium patens HOM05D005952 ORTHO05D007262 2.2e-107 393.7 492 54.9
SEGI_29251 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 9.8e-100 368.2 264 69.7
Peaxi162Scf00518g00512 Petunia axillaris HOM05D005952 ORTHO05D007262 2.1e-94 350.5 268 65.3
Solyc12g035650.2 Solanum lycopersicum HOM05D005952 ORTHO05D007262 3.6e-94 349.7 268 64.9
Sopen12g015910 Solanum pennellii HOM05D005952 ORTHO05D007262 3.6e-94 349.7 268 64.9
Nn3g16502 Nelumbo nucifera HOM05D005952 ORTHO05D007262 4.7e-94 349.4 278 64.7
MBI11_g07451_MAGBIO Magnolia biondii HOM05D005952 ORTHO05D007262 6.1e-94 349.0 268 66.4
PGR102G2583 Punica granatum HOM05D005952 ORTHO05D007262 8.0e-94 348.6 268 65.3
Aqoxy5G03416 Aquilegia oxysepala HOM05D005952 ORTHO05D007262 1.0e-93 348.2 276 64.9
CiPaw.06G101100 Carya illinoinensis HOM05D005952 ORTHO05D007262 1.4e-93 347.8 266 66.2
Eucgr.B03481 Eucalyptus grandis HOM05D005952 ORTHO05D007262 1.4e-93 347.8 272 65.4
Manes.13G018200 Manihot esculenta HOM05D005952 ORTHO05D007262 3.0e-93 346.7 273 64.8
TAR622G0739 Trochodendron aralioides HOM05D005952 ORTHO05D007262 4.0e-93 346.3 272 65.1
Cfa009332 Carpinus fangiana HOM05D005952 ORTHO05D007262 1.2e-92 344.7 266 65.8
CDE02G4251 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 1.5e-92 344.4 271 65.7
Prupe.1G228700 Prunus persica HOM05D005952 ORTHO05D007262 2.0e-92 344.0 268 64.2
QL03p053757 Quercus lobata HOM05D005952 ORTHO05D007262 2.0e-92 344.0 269 64.7
Cc00_g13550 Coffea canephora HOM05D005952 ORTHO05D007262 2.6e-92 343.6 271 64.9
Dinv14825 Davidia involucrata HOM05D005952 ORTHO05D007262 2.6e-92 343.6 268 64.2
TWI75G1563 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 4.4e-92 342.8 271 63.5
ATR0561G264 Amborella trichopoda HOM05D005952 ORTHO05D007262 5.7e-92 342.4 278 63.3
CAN.G34.9 Capsicum annuum HOM05D005952 ORTHO05D007262 5.7e-92 342.4 382 52.6
Duzib251G0036 Durio zibethinus HOM05D005952 ORTHO05D007262 7.5e-92 342.0 269 64.7
GSVIVG01010442001 Vitis vinifera HOM05D005952 ORTHO05D007262 9.8e-92 341.7 265 64.9
CSS0022532 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 1.3e-91 341.3 263 65.8
CSS0029993 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 1.3e-91 341.3 263 65.8
Potri.010G059100 Populus trichocarpa HOM05D005952 ORTHO05D007262 1.7e-91 340.9 262 66.0
Actinidia20698 Actinidia chinensis HOM05D005952 ORTHO05D007262 2.2e-91 340.5 272 62.9
MD16G1117500 Malus domestica HOM05D005952 ORTHO05D007262 2.2e-91 340.5 273 63.0
Ciclev10031923m.g Citrus clementina HOM05D005952 ORTHO05D007262 6.3e-91 339.0 273 63.7
Gohir.A03G127000 Gossypium hirsutum HOM05D005952 ORTHO05D007262 6.3e-91 339.0 269 63.9
Gohir.D02G150400 Gossypium hirsutum HOM05D005952 ORTHO05D007262 6.3e-91 339.0 269 63.9
Sabra10G0046500 Salix brachista HOM05D005952 ORTHO05D007262 6.3e-91 339.0 265 64.5
Lj1g0012703 Lotus japonicus HOM05D005952 ORTHO05D007262 1.8e-90 337.4 275 62.2
Thecc.02G212400 Theobroma cacao HOM05D005952 ORTHO05D007262 1.8e-90 337.4 271 64.9
TWI36G0663 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 2.4e-90 337.0 271 63.1
CANSAT01G2967 Cannabis sativa HOM05D005952 ORTHO05D007262 4.1e-90 336.3 272 62.5
RcHm_v2.0_Chr4g0430621 Rosa chinensis HOM05D005952 ORTHO05D007262 5.4e-90 335.9 265 64.5
Gorai.005G168700 Gossypium raimondii HOM05D005952 ORTHO05D007262 1.2e-89 334.7 269 63.6
Glyma.18G008100 Glycine max HOM05D005952 ORTHO05D007262 1.6e-89 334.3 275 62.2
MSTRG.7992 Avicennia marina HOM05D005952 ORTHO05D007262 2.0e-89 334.0 266 63.2
ClCG11G013770 Citrullus lanatus HOM05D005952 ORTHO05D007262 2.7e-89 333.6 272 62.9
Nitab4.5_0000492g0130 Nicotiana tabacum HOM05D005952 ORTHO05D007262 4.6e-89 332.8 268 63.1
MELO3C011875.2 Cucumis melo HOM05D005952 ORTHO05D007262 5.9e-89 332.4 272 62.5
Medtr3g085590 Medicago truncatula HOM05D005952 ORTHO05D007262 7.8e-89 332.0 273 62.3
Hund06080 Selenicereus undatus HOM05D005952 ORTHO05D007262 7.8e-89 332.0 269 62.8
Atru.chr11.2304 Acer truncatum HOM05D005952 ORTHO05D007262 1.0e-88 331.6 272 62.1
EL10Ac6g13481 Beta vulgaris HOM05D005952 ORTHO05D007262 1.0e-88 331.6 269 62.1
AUR62024128 Chenopodium quinoa HOM05D005952 ORTHO05D007262 1.0e-88 331.6 271 62.7
Lalb_Chr12g0206321 Lupinus albus HOM05D005952 ORTHO05D007262 1.0e-88 331.6 276 61.2
Haze_12392 Corylus avellana HOM05D005952 ORTHO05D007262 1.3e-88 331.3 306 58.2
Lj3A1066G68 Lonicera japonica HOM05D005952 ORTHO05D007262 1.3e-88 331.3 271 61.6
VMungo1383G3287 Vigna mungo HOM05D005952 ORTHO05D007262 1.3e-88 331.3 271 61.6
AagrBONN_evm.TU.Sc2ySwM_362.1552 Anthoceros agrestis HOM05D005952 ORTHO05D007262 1.7e-88 330.9 265 62.6
Psat5g094800 Pisum sativum HOM05D005952 ORTHO05D007262 1.7e-88 330.9 274 61.3
Sed0028059 Sechium edule HOM05D005952 ORTHO05D007262 1.7e-88 330.9 272 61.4
Phvul.001G260500 Phaseolus vulgaris HOM05D005952 ORTHO05D007262 2.3e-88 330.5 270 61.9
CsaV3_5G030360 Cucumis sativus L. HOM05D005952 ORTHO05D007262 3.9e-88 329.7 272 62.1
FAN07G2304 Fragaria x ananassa HOM05D005952 ORTHO05D007262 3.9e-88 329.7 272 63.6
COL.COLO4_20379 Corchorus olitorius HOM05D005952 ORTHO05D007262 5.0e-88 329.3 298 59.1
MD13G1116800 Malus domestica HOM05D005952 ORTHO05D007262 5.0e-88 329.3 264 63.3
FAN07G2604 Fragaria x ananassa HOM05D005952 ORTHO05D007262 8.6e-88 328.6 274 62.8
FAN24G3446 Fragaria x ananassa HOM05D005952 ORTHO05D007262 8.6e-88 328.6 274 62.8
FvH4_4g23970 Fragaria vesca HOM05D005952 ORTHO05D007262 1.1e-87 328.2 263 64.3
Cpa.g.sc43.12 Carica papaya HOM05D005952 ORTHO05D007262 1.5e-87 327.8 293 58.7
CBR_g21943 Chara braunii HOM05D005952 ORTHO05D007262 1.5e-87 327.8 267 61.8
Glyma.11G249200 Glycine max HOM05D005952 ORTHO05D007262 1.9e-87 327.4 266 62.8
Ah.02g130720 Amaranthus hybridus HOM05D005952 ORTHO05D007262 4.3e-87 326.2 268 61.2
THA.LOC104825515 Tarenaya hassleriana HOM05D005952 ORTHO05D007262 7.3e-87 325.5 272 61.8
arahy.Tifrunner.gnm1.ann1.19W7I6 Arachis hypogaea HOM05D005952 ORTHO05D007262 1.2e-86 324.7 267 62.5
AT1G24310 Arabidopsis thaliana HOM05D005952 ORTHO05D007262 1.6e-86 324.3 272 59.9
Oeu036880.1 Olea europaea HOM05D005952 ORTHO05D007262 2.1e-86 323.9 402 49.0
HanXRQChr08g0207671 Helianthus annuus HOM05D005952 ORTHO05D007262 3.6e-86 323.2 266 60.5
AL1G40610 Arabidopsis lyrata HOM05D005952 ORTHO05D007262 1.0e-85 321.6 272 59.9
Carub.0001s2576 Capsella rubella HOM05D005952 ORTHO05D007262 1.0e-85 321.6 270 60.0
Lsat_1_v5_gn_8_149221 Lactuca sativa HOM05D005952 ORTHO05D007262 1.0e-85 321.6 266 61.7
Sp1g23460 Schrenkiella parvula HOM05D005952 ORTHO05D007262 1.8e-85 320.9 272 59.9
BcaC01g01637 Brassica carinata HOM05D005952 ORTHO05D007262 3.1e-85 320.1 272 59.9
A08p26510 Brassica napus HOM05D005952 ORTHO05D007262 3.1e-85 320.1 272 59.9
BolC3t19647H Brassica oleracea HOM05D005952 ORTHO05D007262 3.1e-85 320.1 272 59.9
BraA08t34603Z Brassica rapa HOM05D005952 ORTHO05D007262 3.1e-85 320.1 272 59.9
CARHR026780 Cardamine hirsuta HOM05D005952 ORTHO05D007262 4.0e-85 319.7 272 59.2
SGA_v2.0_scaffold9G04762 Striga asiatica HOM05D005952 ORTHO05D007262 5.2e-85 319.3 271 59.4
C03p73530 Brassica napus HOM05D005952 ORTHO05D007262 8.9e-85 318.5 272 59.6
BcaB03g12064 Brassica carinata HOM05D005952 ORTHO05D007262 1.2e-84 318.2 272 59.9
HPP92_023193 Vanilla planifolia HOM05D005952 ORTHO05D007262 1.2e-84 318.2 271 57.9
ECA233G5976 Erigeron canadensis HOM05D005952 ORTHO05D007262 2.6e-84 317.0 264 60.6
Os07g0295400 Oryza sativa ssp. japonica HOM05D005952 ORTHO05D007262 9.8e-84 315.1 276 58.0
Sc04g0004640 Simmondsia chinensis HOM05D005952 ORTHO05D007262 9.8e-84 315.1 271 56.8
Migut.K00712 Erythranthe guttata HOM05D005952 ORTHO05D007262 4.9e-83 312.8 271 59.8
Nitab4.5_0002026g0100 Nicotiana tabacum HOM05D005952 ORTHO05D007262 1.4e-82 311.2 268 60.4
CBR_g39502 Chara braunii HOM05D005952 ORTHO05D007262 2.4e-82 310.5 388 48.5
FAN03G3372 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.4e-82 310.5 284 59.5
Potri.008G176100 Populus trichocarpa HOM05D005952 ORTHO05D007262 2.4e-82 310.5 265 61.1
Aa31LG7G9800 Aethionema arabicum HOM05D005952 ORTHO05D007262 9.2e-82 308.5 274 57.7
Ca_16474_v3 Cicer arietinum L. HOM05D005952 ORTHO05D007262 1.3e-80 304.7 250 62.0
Rhsim12G0102200 Rhododendron simsii HOM05D005952 ORTHO05D007262 3.9e-80 303.1 354 50.0
Zm00001eb305390 Zea mays HOM05D005952 ORTHO05D007262 1.5e-79 301.2 269 56.5
PSO063G3255 Papaver somniferum HOM05D005952 ORTHO05D007262 3.3e-79 300.1 264 58.7
PSO782G2816 Papaver somniferum HOM05D005952 ORTHO05D007262 1.2e-78 298.1 264 58.3
FAN27G1928 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.1e-78 297.4 272 58.1
DCAR_031192 Daucus carota HOM05D005952 ORTHO05D007262 4.7e-78 296.2 238 61.3
FAN21G1414 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.8e-77 294.3 270 57.4
Sed0012291 Sechium edule HOM05D005952 ORTHO05D007262 4.4e-76 289.7 274 55.8
AUR62005599 Chenopodium quinoa HOM05D005952 ORTHO05D007262 2.9e-75 287.0 235 63.0
SHI17953 Sapria himalayana HOM05D005952 ORTHO05D007262 1.0e-72 278.5 235 57.9
arahy.Tifrunner.gnm1.ann1.2251QZ Arachis hypogaea HOM05D005952 ORTHO05D007262 1.2e-65 255.0 267 52.4
FAN04G2616 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.6e-65 254.6 227 59.5
CDE06G2258 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 3.5e-65 253.4 271 53.1
Thhalv10008300m.g Eutrema salsugineum HOM05D005952 ORTHO05D007262 6.0e-65 252.7 187 64.2
Pp3c14_14130 Physcomitrium patens HOM05D005952 ORTHO05D007262 6.8e-61 239.2 273 53.1
SalBow2G2019 Salvia bowleyana HOM05D005952 ORTHO05D007262 1.3e-59 235.0 263 51.3
FAN04G0683 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.5e-55 221.5 156 69.2
Actinidia09658 Actinidia chinensis HOM05D005952 ORTHO05D007262 2.8e-54 217.2 217 53.5
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 2.2e-51 207.6 166 60.8
Hma1.2p1_0668F.1_g200020 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 5.1e-48 196.4 168 60.1
TWI36G1659 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 2.1e-41 174.5 291 39.5
FAN23G0106 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.1e-37 162.2 105 75.2
Hma1.2p1_0668F.1_g200040 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 1.1e-37 162.2 102 72.5
SEGI_23869 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 5.5e-26 123.2 96 59.4
HanXRQChr03g0071651 Helianthus annuus HOM05D005952 ORTHO05D007262 3.3e-23 114.0 76 67.1
Cre12.g542950 Chlamydomonas reinhardtii HOM05D005952 ORTHO05D007262 1.1e-18 99.0 235 28.5
MCO04G375 Micromonas commoda HOM05D005952 ORTHO05D007262 1.1e-18 99.0 343 25.4
Oeu029609.1 Olea europaea HOM05D005952 ORTHO05D007262 8.2e-14 82.8 62 58.1
SEGI_30692 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 5.3e-13 80.1 122 40.2
FAN04G0535 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.0e-11 75.9 111 45.0


User provided reference genes

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