Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 0.0e+00 1255.4 635 100.0
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 2.3e-295 1018.5 631 80.0
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 4.3e-294 1014.2 635 80.0
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 5.6e-294 1013.8 632 79.1
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 1.6e-293 1012.3 635 78.7
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 4.8e-293 1010.7 631 78.8
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 1.8e-292 1008.8 632 78.2
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 5.3e-292 1007.3 635 78.4
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 1.5e-291 1005.7 631 78.4
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 2.0e-291 1005.4 632 78.3
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 2.6e-291 1005.0 631 78.3
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 3.4e-291 1004.6 631 78.3
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 4.5e-291 1004.2 631 78.6
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 4.5e-291 1004.2 633 78.2
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 4.5e-291 1004.2 632 78.0
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 4.5e-291 1004.2 632 78.3
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 5.8e-291 1003.8 631 78.4
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 5.8e-291 1003.8 635 77.2
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 7.6e-291 1003.4 635 77.8
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 7.6e-291 1003.4 631 78.1
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 7.6e-291 1003.4 635 77.6
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 1.3e-290 1002.7 632 77.7
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 1.3e-290 1002.7 627 78.1
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 1.7e-290 1002.3 631 78.4
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 1.7e-290 1002.3 632 78.5
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 1.7e-290 1002.3 632 77.8
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 1.7e-290 1002.3 635 77.6
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 2.2e-290 1001.9 631 78.1
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 2.2e-290 1001.9 631 78.1
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 2.9e-290 1001.5 632 77.5
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 3.8e-290 1001.1 632 78.2
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 3.8e-290 1001.1 635 77.5
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 4.9e-290 1000.7 632 77.8
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 6.4e-290 1000.3 632 77.4
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 6.4e-290 1000.3 630 78.3
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 8.4e-290 1000.0 632 78.0
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 8.4e-290 1000.0 635 77.0
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 8.4e-290 1000.0 635 77.3
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 1.1e-289 999.6 635 77.0
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 1.1e-289 999.6 632 77.7
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 1.1e-289 999.6 632 77.5
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 1.1e-289 999.6 631 77.3
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 1.4e-289 999.2 632 77.5
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 1.4e-289 999.2 632 78.2
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 1.4e-289 999.2 632 77.4
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 1.9e-289 998.8 635 77.0
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 1.9e-289 998.8 635 77.2
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 2.4e-289 998.4 633 77.7
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 2.4e-289 998.4 631 77.7
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 2.4e-289 998.4 635 77.2
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 2.4e-289 998.4 635 77.2
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 2.4e-289 998.4 635 77.2
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 2.4e-289 998.4 635 77.0
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 2.4e-289 998.4 642 76.9
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 4.2e-289 997.7 635 77.6
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 4.2e-289 997.7 631 78.3
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 4.2e-289 997.7 631 78.4
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 5.5e-289 997.3 631 77.8
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 5.5e-289 997.3 631 77.7
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 9.3e-289 996.5 635 77.0
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 1.2e-288 996.1 631 77.7
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 1.6e-288 995.7 635 77.8
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 2.1e-288 995.3 635 76.9
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 2.1e-288 995.3 627 77.2
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 2.7e-288 995.0 631 78.3
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 2.7e-288 995.0 632 77.5
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 3.5e-288 994.6 632 76.7
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 3.5e-288 994.6 631 78.0
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 4.6e-288 994.2 626 78.3
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 6.0e-288 993.8 632 77.5
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 1.0e-287 993.0 632 78.0
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 1.3e-287 992.6 631 77.8
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 1.3e-287 992.6 632 77.4
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 1.8e-287 992.3 632 77.4
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 1.8e-287 992.3 632 77.8
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 1.8e-287 992.3 633 76.9
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 2.3e-287 991.9 632 76.7
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 3.0e-287 991.5 633 76.5
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 3.0e-287 991.5 632 76.9
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 6.7e-287 990.3 625 78.7
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 6.7e-287 990.3 631 77.0
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 1.1e-286 989.6 622 78.3
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 1.1e-286 989.6 626 78.3
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 1.1e-286 989.6 631 77.5
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 1.1e-286 989.6 632 77.2
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 1.9e-286 988.8 632 77.1
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 4.3e-286 987.6 633 76.1
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 1.8e-284 982.2 632 77.1
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 2.4e-284 981.9 626 77.3
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 4.0e-284 981.1 630 75.7
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 1.5e-283 979.2 632 76.7
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 1.5e-283 979.2 626 76.4
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 2.0e-283 978.8 632 76.3
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 5.8e-283 977.2 658 74.3
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 5.8e-283 977.2 631 76.4
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 1.0e-282 976.5 632 76.9
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 6.5e-282 973.8 626 76.7
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 9.3e-281 969.9 635 76.2
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 9.3e-281 969.9 627 76.6
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 6.0e-280 967.2 627 75.9
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 7.9e-280 966.8 632 75.5
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 3.4e-275 951.4 626 74.3
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 5.1e-271 937.6 582 78.5
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 2.2e-266 922.2 637 73.0
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 4.2e-265 917.9 642 72.4
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 4.8e-253 877.9 624 70.2
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 2.2e-250 869.0 534 79.6
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 2.5e-249 865.5 645 68.4
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 2.7e-248 862.1 534 78.7
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 2.4e-244 849.0 537 78.8
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 5.7e-238 827.8 499 83.2
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 1.3e-237 826.6 635 65.5
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 2.7e-227 792.3 494 80.2
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 1.7e-226 789.6 627 64.1
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.8e-220 769.6 636 60.8
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 1.1e-217 760.4 503 74.4
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 8.3e-213 744.2 503 73.4
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 8.3e-205 717.6 635 61.6
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 1.9e-201 706.4 632 60.3
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 4.3e-177 625.5 444 69.6
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.0e-174 616.7 533 62.1
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 1.8e-170 603.6 642 50.5
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.4e-159 566.6 445 66.3
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 4.5e-158 562.4 354 77.7
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 7.2e-140 501.9 406 66.5
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 1.5e-129 467.6 309 76.4
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 3.7e-120 436.4 276 79.3
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 6.3e-120 435.6 291 74.2
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 4.9e-112 409.5 526 43.0
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 2.3e-77 294.3 196 75.0
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 1.2e-73 282.0 231 60.2
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 3.9e-69 266.9 179 76.0
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 4.8e-67 260.0 235 60.0
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 2.9e-64 250.8 159 76.7
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 1.1e-60 238.8 163 73.0
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 1.9e-55 221.5 141 68.8
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 7.9e-46 189.5 273 41.4
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 1.0e-40 172.6 223 47.5
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 4.3e-36 157.1 104 71.2
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 9.1e-34 149.4 90 83.3
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 5.9e-33 146.7 99 72.7
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 2.9e-32 144.4 84 70.2
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 9.4e-31 139.4 99 72.7
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 9.7e-28 129.4 91 63.7
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 2.2e-27 128.3 172 41.9
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 3.7e-27 127.5 99 65.7
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 5.3e-26 123.6 73 69.9
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 2.6e-25 121.3 155 48.4
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 5.9e-25 120.2 149 47.7
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 4.1e-18 97.4 53 88.7
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 4.1e-18 97.4 121 47.1
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 4.5e-17 94.0 55 80.0
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 7.2e-15 86.7 50 76.0
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 3.6e-14 84.3 47 80.9
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 5.2e-13 80.5 61 55.7
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 4.5e-09 67.4 56 53.6
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 1.0e-08 66.2 72 48.6
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 1.7e-08 65.5 43 65.1


User provided reference genes

Program Settings