Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0009s0193 Marchantia polymorpha HOM05D014854 ORTHO05D017299 1.5e-244 849.0 404 100.0
AagrBONN_evm.TU.Sc2ySwM_344.2532 Anthoceros agrestis HOM05D014854 ORTHO05D017299 3.4e-196 688.3 399 78.7
SMO174G0146 Selaginella moellendorffii HOM05D014854 ORTHO05D017299 1.9e-146 523.1 401 62.6
PRCOL_00001781 Prasinoderma coloniale HOM05D014854 ORTHO05D017299 2.3e-144 516.2 409 58.9
Pp3c12_25770 Physcomitrium patens HOM05D014854 ORTHO05D017299 1.4e-141 506.9 402 62.9
MCO15G125 Micromonas commoda HOM05D014854 ORTHO05D017299 3.0e-139 499.2 402 56.0
Cre01.g065822 Chlamydomonas reinhardtii HOM05D014854 ORTHO05D017299 1.2e-137 493.8 401 55.4
CBR_g968 Chara braunii HOM05D014854 ORTHO05D043921 7.0e-32 142.5 118 50.8
CBR_g966 Chara braunii HOM05D014854 ORTHO05D017299 5.1e-22 109.8 89 58.4
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 4.7e-12 76.6 298 25.5
AUR62024845 Chenopodium quinoa HOM05D003913 ORTHO05D004803 1.2e-10 72.0 272 22.8
TPR.G30584 Trifolium pratense HOM05D003913 ORTHO05D004803 4.4e-10 70.1 171 29.8
Sopen12g030520 Solanum pennellii HOM05D002634 ORTHO05D003100 7.6e-10 69.3 195 27.2
Aa31LG7G6630 Aethionema arabicum HOM05D003913 ORTHO05D004803 9.9e-10 68.9 298 25.8
Cre12.g559850 Chlamydomonas reinhardtii HOM05D005961 ORTHO05D007391 9.9e-10 68.9 263 25.5
SalBow7G0942 Salvia bowleyana HOM05D001610 ORTHO05D001585 9.9e-10 68.9 310 23.2
EL10Ac9g21859 Beta vulgaris HOM05D003913 ORTHO05D004803 1.3e-09 68.6 288 21.9
Sopen12g002260 Solanum pennellii HOM05D001610 ORTHO05D001585 3.8e-09 67.0 222 26.6
Nitab4.5_0004406g0050 Nicotiana tabacum HOM05D001610 ORTHO05D001585 1.9e-08 64.7 225 25.8
Lsat_1_v5_gn_1_16041 Lactuca sativa HOM05D001610 ORTHO05D001585 4.2e-08 63.5 207 24.2
vmacro16690 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 9.3e-08 62.4 157 33.1
HanXRQChr14g0449681 Helianthus annuus HOM05D002634 ORTHO05D003100 2.7e-07 60.8 85 37.6
CARHR124080 Cardamine hirsuta HOM05D003913 ORTHO05D004803 3.5e-07 60.5 232 26.3
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 3.5e-07 60.5 128 31.2
Glyma.11G051700 Glycine max HOM05D002634 ORTHO05D003100 3.5e-07 60.5 66 43.9
Medtr4g104380 Medicago truncatula HOM05D000464 ORTHO05D006292 3.5e-07 60.5 159 30.8
Glyma.18G114800 Glycine max HOM05D001610 ORTHO05D001585 6.0e-07 59.7 250 23.2
Sabra08G0000700 Salix brachista HOM05D001610 ORTHO05D001585 6.0e-07 59.7 211 26.1
Sed0021790 Sechium edule HOM05D001610 ORTHO05D001585 7.8e-07 59.3 216 23.1
Sopen12g030530 Solanum pennellii HOM05D002634 ORTHO05D003100 7.8e-07 59.3 66 42.4
DCAR_023497 Daucus carota HOM05D001610 ORTHO05D001585 1.0e-06 58.9 139 29.5
Rhsim12G0170400 Rhododendron simsii HOM05D000464 ORTHO05D006292 1.0e-06 58.9 157 31.8
TPR.G22908 Trifolium pratense HOM05D000464 ORTHO05D006292 1.3e-06 58.5 159 28.3
TAR381G1718 Trochodendron aralioides HOM05D002634 ORTHO05D003100 1.3e-06 58.5 83 36.1
Hma1.2p1_0513F.1_g169660 Hydrangea macrophylla HOM05D001610 ORTHO05D001585 1.7e-06 58.2 127 28.3
Nitab4.5_0000569g0150 Nicotiana tabacum HOM05D002634 ORTHO05D003100 1.7e-06 58.2 66 42.4
Solyc12g088630.2 Solanum lycopersicum HOM05D002634 ORTHO05D003100 1.7e-06 58.2 66 42.4
AUR62033738 Chenopodium quinoa HOM05D002288 ORTHO05D002894 2.3e-06 57.8 135 32.6
DCAR_012802 Daucus carota HOM05D002634 ORTHO05D003100 2.3e-06 57.8 88 33.0
Lj4A762T8 Lonicera japonica HOM05D002634 ORTHO05D003100 2.3e-06 57.8 88 33.0
Lj4g0023649 Lotus japonicus HOM05D000464 ORTHO05D006292 2.3e-06 57.8 158 27.8
arahy.Tifrunner.gnm1.ann1.IR4XNQ Arachis hypogaea HOM05D000464 ORTHO05D006292 3.0e-06 57.4 159 29.6
Nitab4.5_0001158g0040 Nicotiana tabacum HOM05D002288 ORTHO05D002894 3.0e-06 57.4 132 31.1
SalBow7G2278 Salvia bowleyana HOM05D002634 ORTHO05D003100 3.0e-06 57.4 66 39.4
Phvul.006G027500 Phaseolus vulgaris HOM05D001610 ORTHO05D001585 3.9e-06 57.0 213 23.9
Solyc07g044850.3 Solanum lycopersicum HOM05D001610 ORTHO05D001585 3.9e-06 57.0 125 29.6
Sopen07g023410 Solanum pennellii HOM05D001610 ORTHO05D001585 3.9e-06 57.0 125 29.6
arahy.Tifrunner.gnm1.ann1.733L1L Arachis hypogaea HOM05D000464 ORTHO05D006292 5.1e-06 56.6 159 29.6
Lj4C56G20 Lonicera japonica HOM05D003913 ORTHO05D004803 6.6e-06 56.2 133 26.3
Nn5g30448 Nelumbo nucifera HOM05D002634 ORTHO05D003100 6.6e-06 56.2 88 33.0
Pp3c16_11580 Physcomitrium patens HOM05D022704 ORTHO05D021262 6.6e-06 56.2 68 35.3
Medtr1g107560 Medicago truncatula HOM05D003955 ORTHO05D004684 8.7e-06 55.8 214 24.8
Nitab4.5_0000934g0230 Nicotiana tabacum HOM05D002634 ORTHO05D003100 8.7e-06 55.8 66 40.9
Nitab4.5_0003633g0010 Nicotiana tabacum HOM05D002634 ORTHO05D003100 8.7e-06 55.8 66 40.9
SMO358G0389 Selaginella moellendorffii HOM05D015011 ORTHO05D017325 8.7e-06 55.8 127 30.7
unitig_8.g3367 Utricularia gibba HOM05D002634 ORTHO05D003100 8.7e-06 55.8 68 39.7


User provided reference genes

Program Settings