Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 0.0e+00 1298.1 698 100.0
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 1.1e-240 837.0 716 62.6
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 9.0e-219 764.2 704 55.7
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 1.5e-218 763.5 696 56.5
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 7.6e-218 761.1 706 55.1
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 1.3e-217 760.4 690 58.1
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 1.3e-217 760.4 700 56.1
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 7.1e-216 754.6 699 55.2
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 9.3e-216 754.2 698 53.7
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 2.7e-215 752.7 697 54.9
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 2.7e-215 752.7 695 54.8
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 1.8e-214 750.0 701 54.4
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 8.7e-214 747.7 704 54.5
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 1.5e-213 746.9 687 58.5
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 1.5e-213 746.9 700 54.6
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 1.5e-213 746.9 713 53.7
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 2.5e-213 746.1 697 55.2
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 5.7e-213 745.0 713 53.9
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 5.3e-211 738.4 698 54.4
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 2.6e-210 736.1 702 53.4
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 3.8e-209 732.3 695 53.8
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 5.0e-209 731.9 707 52.5
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 5.0e-209 731.9 707 52.5
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 5.0e-209 731.9 706 53.1
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 5.0e-209 731.9 707 53.0
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 8.4e-209 731.1 699 54.2
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.2e-208 729.2 702 52.4
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 3.2e-208 729.2 702 52.4
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 5.5e-208 728.4 697 53.8
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 7.2e-208 728.0 701 53.2
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 2.1e-207 726.5 702 52.6
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 2.1e-207 726.5 715 53.4
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 3.5e-207 725.7 701 53.9
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 3.5e-207 725.7 707 55.0
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 6.1e-207 724.9 696 52.2
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 6.1e-207 724.9 756 54.4
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 1.8e-206 723.4 693 53.0
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 2.3e-206 723.0 697 52.7
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 6.7e-206 721.5 701 52.4
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 1.5e-205 720.3 701 54.2
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 9.7e-205 717.6 698 53.6
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 9.7e-205 717.6 695 52.9
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 1.1e-203 714.1 702 52.0
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 2.4e-203 713.0 710 51.8
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 6.9e-203 711.4 701 54.1
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 1.5e-202 710.3 703 54.2
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 1.5e-202 710.3 703 53.9
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 3.4e-202 709.1 704 52.0
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 4.5e-202 708.8 698 52.7
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.0e-201 707.6 653 54.1
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 1.7e-201 706.8 697 51.4
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 2.9e-201 706.1 698 51.6
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 8.5e-201 704.5 701 51.8
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 1.4e-200 703.7 699 51.8
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 4.2e-200 702.2 701 51.5
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 9.4e-200 701.0 677 53.0
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 9.4e-200 701.0 700 51.4
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 1.2e-199 700.7 699 50.4
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 1.2e-199 700.7 729 50.9
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 1.2e-199 700.7 704 50.9
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 3.6e-199 699.1 705 51.6
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 4.6e-199 698.7 729 50.8
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 2.0e-197 693.3 698 52.4
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 9.7e-197 691.0 712 50.0
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 2.2e-196 689.9 702 51.3
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 2.8e-196 689.5 698 50.6
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 8.2e-196 688.0 692 51.2
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 4.1e-195 685.6 697 50.4
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 5.3e-195 685.3 697 51.4
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 6.9e-195 684.9 697 50.9
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 4.5e-194 682.2 697 51.1
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 1.7e-193 680.2 698 49.7
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 1.7e-193 680.2 698 49.7
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 2.2e-193 679.9 698 49.7
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 3.8e-193 679.1 702 49.9
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 5.0e-193 678.7 702 49.9
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 1.9e-192 676.8 697 50.2
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 1.6e-191 673.7 702 50.1
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 4.7e-191 672.2 704 50.0
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 1.0e-190 671.0 702 51.4
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 1.0e-190 671.0 703 49.6
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 6.7e-190 668.3 550 57.8
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 8.8e-190 667.9 701 49.8
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 2.6e-189 666.4 703 49.9
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 7.0e-187 658.3 690 50.1
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 1.0e-185 654.4 702 49.3
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 2.9e-185 652.9 507 60.2
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 3.8e-185 652.5 703 46.9
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 1.4e-182 644.0 703 48.1
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 3.7e-180 636.0 705 47.9
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 3.7e-180 636.0 705 47.9
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 4.8e-180 635.6 707 48.5
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 3.1e-179 632.9 707 48.4
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 3.1e-179 632.9 447 65.3
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 8.5e-177 624.8 698 47.3
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 4.0e-174 615.9 730 46.6
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 2.8e-172 609.8 703 46.8
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 1.7e-169 600.5 1024 36.4
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 5.5e-168 595.5 505 55.2
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 2.5e-160 570.1 681 49.6
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 8.9e-158 561.6 704 44.3
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 1.5e-157 560.8 434 61.3
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 8.3e-156 555.1 703 42.7
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 3.2e-155 553.1 430 57.2
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 7.8e-146 521.9 851 36.9
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 4.7e-143 512.7 560 47.5
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 3.6e-135 486.5 696 40.5
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 8.1e-135 485.3 680 40.6
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 3.8e-132 476.5 534 46.6
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 1.1e-123 448.4 549 45.2
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 2.4e-123 447.2 546 41.8
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 3.0e-113 413.7 580 40.5
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 3.0e-113 413.7 460 51.7
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 1.0e-97 362.1 427 45.0
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 4.3e-88 330.1 621 34.1
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 4.6e-82 310.1 411 43.1
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 5.1e-81 306.6 432 41.7
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 3.7e-79 300.4 294 50.7
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 1.0e-73 282.3 303 48.2
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 5.2e-73 280.0 370 41.9
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 1.2e-66 258.8 218 55.0
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 3.3e-64 250.8 190 63.7
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 2.0e-56 224.9 239 47.3
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 1.1e-51 209.1 248 43.5
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 2.1e-50 204.9 386 37.3
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 2.3e-49 201.4 133 69.9
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 3.1e-46 191.0 262 40.1
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 1.6e-45 188.7 186 50.0
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 1.6e-45 188.7 131 64.9
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 5.2e-41 173.7 107 72.0
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 1.8e-38 165.2 119 62.2
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 1.6e-34 152.1 114 63.2
Lj1A1094G14 Lonicera japonica HOM05D003729 ORTHO05D004384 8.0e-34 149.8 278 41.0
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 2.0e-32 145.2 107 62.6
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 1.3e-31 142.5 102 64.7
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 3.7e-31 141.0 102 63.7
AUR62022314 Chenopodium quinoa HOM05D000534 ORTHO05D000389 4.9e-31 140.6 142 52.1
Haze_16229 Corylus avellana HOM05D003729 ORTHO05D004384 4.1e-30 137.5 287 37.6
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 5.4e-30 137.1 108 64.8
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 2.0e-29 135.2 114 56.1
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 6.0e-29 133.7 87 67.8
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 6.0e-29 133.7 87 67.8
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 6.0e-29 133.7 87 67.8
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 8.6e-28 129.8 85 67.1
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 8.6e-28 129.8 229 33.6
Haze_20214 Corylus avellana HOM05D003729 ORTHO05D004384 1.9e-27 128.6 279 36.2
Haze_20210 Corylus avellana HOM05D003729 ORTHO05D004384 9.5e-27 126.3 275 36.0
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 6.2e-26 123.6 203 35.0
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 1.1e-25 122.9 207 34.3
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 1.5e-24 119.0 174 34.5
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 5.8e-24 117.1 78 65.4
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 9.9e-24 116.3 106 47.2
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 2.9e-23 114.8 78 64.1
SHI46293 Sapria himalayana HOM05D003729 ORTHO05D004384 1.1e-22 112.8 70 65.7
Thecc.05G137500 Theobroma cacao HOM05D003729 ORTHO05D004384 1.4e-22 112.5 260 35.4
SHI45328 Sapria himalayana HOM05D003729 ORTHO05D004384 1.7e-20 105.5 70 60.0
Haze_16235 Corylus avellana HOM05D003729 ORTHO05D004384 6.8e-17 93.6 101 46.5
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 6.8e-17 93.6 136 43.4
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 3.4e-16 91.3 62 61.3
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 1.7e-15 89.0 62 61.3
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 3.8e-15 87.8 70 52.9
FvH4_3g33711 Fragaria vesca HOM05D003729 ORTHO05D001837 8.4e-15 86.7 96 43.8
SHI50183 Sapria himalayana HOM05D003729 ORTHO05D004384 4.1e-14 84.3 97 41.2
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 6.0e-13 80.5 88 45.5
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 1.3e-12 79.3 56 57.1
Zm00001eb173210 Zea mays HOM05D001162 ORTHO05D001218 2.3e-12 78.6 57 52.6
Zm00001eb077600 Zea mays HOM05D001162 ORTHO05D029047 3.9e-12 77.8 61 49.2
Zm00001eb284510 Zea mays HOM05D001162 ORTHO05D001218 6.6e-12 77.0 57 50.9
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 1.9e-11 75.5 46 69.6
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 1.9e-11 75.5 71 54.9
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 2.1e-10 72.0 63 52.4
SHI45329 Sapria himalayana HOM05D003729 ORTHO05D004384 3.6e-10 71.2 47 61.7
Hund24619 Selenicereus undatus HOM05D003729 ORTHO05D004384 8.1e-10 70.1 182 33.0
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 1.4e-09 69.3 61 49.2
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 1.4e-09 69.3 61 49.2
Haze_20208 Corylus avellana HOM05D003729 ORTHO05D004384 9.0e-09 66.6 55 49.1
Sabra16G0022500 Salix brachista HOM05D000075 ORTHO05D000073 2.0e-08 65.5 45 60.0
Sabra16G0044400 Salix brachista HOM05D002722 ORTHO05D003076 4.9e-07 60.8 71 49.3
SHI48244 Sapria himalayana HOM05D003729 ORTHO05D004384 2.4e-06 58.5 39 59.0
FvH4_1g30561 Fragaria vesca HOM05D033425 ORTHO05D197409 9.3e-06 56.6 71 42.3
FvH4_c4g00011 Fragaria vesca HOM05D033425 ORTHO05D196479 9.3e-06 56.6 71 42.3


User provided reference genes

Program Settings