Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0256 Marchantia polymorpha HOM05D005575 ORTHO05D007355 5.1e-246 854.0 432 100.0
AagrBONN_evm.TU.Sc2ySwM_117.635 Anthoceros agrestis HOM05D005575 ORTHO05D007355 7.5e-157 557.8 401 68.3
SEGI_28733 Sequoiadendron giganteum HOM05D005575 ORTHO05D007355 1.4e-155 553.5 426 65.7
SMO230G0018 Selaginella moellendorffii HOM05D005575 ORTHO05D007355 6.0e-154 548.1 401 68.1
VMungo0720G2094 Vigna mungo HOM05D005575 ORTHO05D007355 2.3e-145 519.6 399 63.9
QL06p000355 Quercus lobata HOM05D005575 ORTHO05D007355 6.6e-145 518.1 399 64.2
arahy.Tifrunner.gnm1.ann1.0U5UXQ Arachis hypogaea HOM05D005575 ORTHO05D007355 1.6e-143 513.5 399 62.7
Dinv44604 Davidia involucrata HOM05D005575 ORTHO05D007355 2.1e-143 513.1 399 63.9
arahy.Tifrunner.gnm1.ann1.XPT1GW Arachis hypogaea HOM05D005575 ORTHO05D007355 2.8e-143 512.7 399 62.7
TWI53G0136 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 3.6e-143 512.3 421 62.0
Haze_11258 Corylus avellana HOM05D005575 ORTHO05D007355 6.2e-143 511.5 399 64.4
Phvul.007G279400 Phaseolus vulgaris HOM05D005575 ORTHO05D007355 6.2e-143 511.5 399 62.9
Glyma.10G001900 Glycine max HOM05D005575 ORTHO05D007355 8.1e-143 511.1 399 62.7
Lj6g0016373 Lotus japonicus HOM05D005575 ORTHO05D007355 1.8e-142 510.0 400 63.0
Ciclev10004932m.g Citrus clementina HOM05D005575 ORTHO05D007355 4.0e-142 508.8 400 62.8
GSVIVG01018083001 Vitis vinifera HOM05D005575 ORTHO05D007355 6.8e-142 508.1 399 63.9
Cfa008407 Carpinus fangiana HOM05D005575 ORTHO05D007355 8.9e-142 507.7 399 63.7
Glyma.02G001600 Glycine max HOM05D005575 ORTHO05D007355 2.0e-141 506.5 399 62.2
Lalb_Chr01g0020841 Lupinus albus HOM05D005575 ORTHO05D007355 2.6e-141 506.1 400 61.8
CiPaw.01G193100 Carya illinoinensis HOM05D005575 ORTHO05D007355 3.4e-141 505.8 400 63.2
Sed0020385 Sechium edule HOM05D005575 ORTHO05D007355 3.4e-141 505.8 400 63.2
Psat6g136600 Pisum sativum HOM05D005575 ORTHO05D007355 5.8e-141 505.0 399 61.7
Eucgr.H03187 Eucalyptus grandis HOM05D005575 ORTHO05D007355 1.3e-140 503.8 416 61.8
Nn3g19479 Nelumbo nucifera HOM05D005575 ORTHO05D007355 1.7e-140 503.4 399 63.7
Prupe.1G025500 Prunus persica HOM05D005575 ORTHO05D007355 2.9e-140 502.7 405 63.7
Potri.008G159900 Populus trichocarpa HOM05D005575 ORTHO05D007355 3.7e-140 502.3 399 63.4
MD16G1218200 Malus domestica HOM05D005575 ORTHO05D007355 6.4e-140 501.5 406 64.0
Actinidia08453 Actinidia chinensis HOM05D005575 ORTHO05D007355 8.3e-140 501.1 399 62.4
ATR0665G105 Amborella trichopoda HOM05D005575 ORTHO05D007355 1.1e-139 500.7 399 61.7
MD13G1203000 Malus domestica HOM05D005575 ORTHO05D007355 1.1e-139 500.7 406 63.8
ECA240G2677 Erigeron canadensis HOM05D005575 ORTHO05D007355 1.4e-139 500.4 400 61.8
Manes.03G170700 Manihot esculenta HOM05D005575 ORTHO05D007355 1.9e-139 500.0 414 61.6
Medtr1g041115 Medicago truncatula HOM05D005575 ORTHO05D007355 1.9e-139 500.0 399 61.2
CsaV3_3G012740 Cucumis sativus L. HOM05D005575 ORTHO05D007355 3.2e-139 499.2 400 62.8
PSO461G0077 Papaver somniferum HOM05D005575 ORTHO05D007355 3.2e-139 499.2 414 60.9
TPR.G32768 Trifolium pratense HOM05D005575 ORTHO05D007355 3.2e-139 499.2 399 61.2
MELO3C006485.2 Cucumis melo HOM05D005575 ORTHO05D007355 4.1e-139 498.8 400 62.8
PGR004G2878 Punica granatum HOM05D005575 ORTHO05D007355 4.1e-139 498.8 416 59.1
Atru.chr4.2312 Acer truncatum HOM05D005575 ORTHO05D007355 7.1e-139 498.0 400 62.0
EL10Ac8g19543 Beta vulgaris HOM05D005575 ORTHO05D007355 9.2e-139 497.7 399 61.9
Manes.15G034800 Manihot esculenta HOM05D005575 ORTHO05D007355 9.2e-139 497.7 419 62.1
Dinv14070 Davidia involucrata HOM05D005575 ORTHO05D007355 1.2e-138 497.3 399 62.7
CANSAT78G2185 Cannabis sativa HOM05D005575 ORTHO05D007355 1.6e-138 496.9 399 64.4
Ca_01767_v3 Cicer arietinum L. HOM05D005575 ORTHO05D007355 1.6e-138 496.9 399 60.7
SalBow3G3314 Salvia bowleyana HOM05D005575 ORTHO05D007355 4.6e-138 495.4 399 59.9
PSO210G5698 Papaver somniferum HOM05D005575 ORTHO05D007355 6.0e-138 495.0 414 60.6
TWI09G0420 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 6.0e-138 495.0 421 60.3
Gorai.011G167300 Gossypium raimondii HOM05D005575 ORTHO05D007355 7.8e-138 494.6 419 60.1
Rhsim02G0032000 Rhododendron simsii HOM05D005575 ORTHO05D007355 7.8e-138 494.6 399 62.2
COL.COLO4_26929 Corchorus olitorius HOM05D005575 ORTHO05D007355 1.0e-137 494.2 414 59.4
ClCG05G004730 Citrullus lanatus HOM05D005575 ORTHO05D007355 1.3e-137 493.8 399 62.2
DCAR_030703 Daucus carota HOM05D005575 ORTHO05D007355 2.3e-137 493.0 412 59.0
Gohir.D10G150300 Gossypium hirsutum HOM05D005575 ORTHO05D007355 3.0e-137 492.7 419 60.1
Gohir.A10G117000 Gossypium hirsutum HOM05D005575 ORTHO05D007355 5.1e-137 491.9 419 59.7
Cc03_g04530 Coffea canephora HOM05D005575 ORTHO05D007355 8.6e-137 491.1 399 60.2
Thecc.04G242000 Theobroma cacao HOM05D005575 ORTHO05D007355 8.6e-137 491.1 414 59.7
FvH4_4g01960 Fragaria vesca HOM05D005575 ORTHO05D007355 1.5e-136 490.3 403 61.3
COL.COLO4_13167 Corchorus olitorius HOM05D005575 ORTHO05D007355 1.9e-136 490.0 414 58.9
Sc25g0004210 Simmondsia chinensis HOM05D005575 ORTHO05D007355 1.9e-136 490.0 414 60.1
Cpa.g.sc58.3 Carica papaya HOM05D005575 ORTHO05D007355 3.3e-136 489.2 413 60.5
HanXRQChr13g0423561 Helianthus annuus HOM05D005575 ORTHO05D007355 3.3e-136 489.2 414 61.1
Nitab4.5_0012347g0010 Nicotiana tabacum HOM05D005575 ORTHO05D007355 4.3e-136 488.8 399 59.1
Duzib052G1036 Durio zibethinus HOM05D005575 ORTHO05D007355 5.6e-136 488.4 414 59.2
FAN17G2264 Fragaria x ananassa HOM05D005575 ORTHO05D007355 5.6e-136 488.4 409 60.1
Hund21566 Selenicereus undatus HOM05D005575 ORTHO05D007355 2.1e-135 486.5 399 60.9
MSTRG.24710 Avicennia marina HOM05D005575 ORTHO05D007355 2.8e-135 486.1 399 60.9
CSS0022244 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 3.6e-135 485.7 399 61.7
RcHm_v2.0_Chr4g0388931 Rosa chinensis HOM05D005575 ORTHO05D007355 3.6e-135 485.7 417 60.2
Sabra08G0121800 Salix brachista HOM05D005575 ORTHO05D007355 6.2e-135 485.0 426 58.7
CSS0045755 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 1.1e-134 484.2 399 61.4
FAN22G1081 Fragaria x ananassa HOM05D005575 ORTHO05D007355 1.1e-134 484.2 403 60.5
Nitab4.5_0000941g0050 Nicotiana tabacum HOM05D005575 ORTHO05D007355 1.1e-134 484.2 399 59.1
SGA_v2.0_scaffold79G25614 Striga asiatica HOM05D005575 ORTHO05D007355 1.8e-134 483.4 399 58.1
Rhsim04G0195700 Rhododendron simsii HOM05D005575 ORTHO05D007355 2.4e-134 483.0 416 59.6
Oeu064221.1 Olea europaea HOM05D005575 ORTHO05D007355 3.1e-134 482.6 416 58.9
Pp3c9_410 Physcomitrium patens HOM05D005575 ORTHO05D007355 5.2e-134 481.9 415 60.5
AUR62034661 Chenopodium quinoa HOM05D005575 ORTHO05D007355 8.9e-134 481.1 399 59.6
Nitab4.5_0000977g0090 Nicotiana tabacum HOM05D005575 ORTHO05D007355 4.4e-133 478.8 414 58.9
Aa31LG8G9490 Aethionema arabicum HOM05D005575 ORTHO05D007355 9.9e-133 477.6 399 59.4
Thhalv10020692m.g Eutrema salsugineum HOM05D005575 ORTHO05D007355 2.2e-132 476.5 414 58.0
Peaxi162Scf00467g00914 Petunia axillaris HOM05D005575 ORTHO05D007355 2.2e-132 476.5 414 58.7
vmacro08393 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 2.2e-132 476.5 410 59.8
Lsat_1_v5_gn_3_124080 Lactuca sativa HOM05D005575 ORTHO05D007355 4.9e-132 475.3 396 60.9
Sopen03g001350 Solanum pennellii HOM05D005575 ORTHO05D007355 4.9e-132 475.3 414 58.9
Nitab4.5_0003815g0070 Nicotiana tabacum HOM05D005575 ORTHO05D007355 6.4e-132 474.9 414 58.9
BcaB06g26421 Brassica carinata HOM05D005575 ORTHO05D007355 8.4e-132 474.6 417 57.1
Solyc03g005310.4 Solanum lycopersicum HOM05D005575 ORTHO05D007355 1.1e-131 474.2 414 58.9
BraA05t21452Z Brassica rapa HOM05D005575 ORTHO05D007355 1.4e-131 473.8 414 57.2
CARHR098930 Cardamine hirsuta HOM05D005575 ORTHO05D007355 1.4e-131 473.8 399 57.9
BcaC05g27989 Brassica carinata HOM05D005575 ORTHO05D007355 5.4e-131 471.9 401 58.4
A05p25710 Brassica napus HOM05D005575 ORTHO05D007355 5.4e-131 471.9 414 57.0
C05p40000 Brassica napus HOM05D005575 ORTHO05D007355 5.4e-131 471.9 401 58.4
BolC5t32746H Brassica oleracea HOM05D005575 ORTHO05D007355 5.4e-131 471.9 401 58.4
Migut.N00227 Erythranthe guttata HOM05D005575 ORTHO05D007355 5.4e-131 471.9 409 57.9
PGSC0003DMG400013391 Solanum tuberosum HOM05D005575 ORTHO05D007355 5.4e-131 471.9 414 58.7
Peaxi162Scf00788g00114 Petunia axillaris HOM05D005575 ORTHO05D007355 7.1e-131 471.5 399 56.6
Migut.G00397 Erythranthe guttata HOM05D005575 ORTHO05D007355 9.2e-131 471.1 399 58.9
AL3G37400 Arabidopsis lyrata HOM05D005575 ORTHO05D007355 1.2e-130 470.7 399 58.4
Duzib151G0571 Durio zibethinus HOM05D005575 ORTHO05D007355 1.2e-130 470.7 401 58.9
HPP92_006286 Vanilla planifolia HOM05D005575 ORTHO05D007355 1.2e-130 470.7 420 57.9
CSS0047423 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 2.7e-130 469.5 400 60.8
Carub.0003s2315 Capsella rubella HOM05D005575 ORTHO05D007355 4.6e-130 468.8 399 57.6
Sp3g20680 Schrenkiella parvula HOM05D005575 ORTHO05D007355 6.0e-130 468.4 400 57.8
CAN.G749.16 Capsicum annuum HOM05D005575 ORTHO05D007355 3.0e-129 466.1 399 57.1
AT3G22990 Arabidopsis thaliana HOM05D005575 ORTHO05D007355 6.6e-129 464.9 401 57.4
PGSC0003DMG401006082 Solanum tuberosum HOM05D005575 ORTHO05D007355 8.7e-129 464.5 399 57.6
Os07g0609766 Oryza sativa ssp. japonica HOM05D005575 ORTHO05D007355 1.1e-128 464.2 400 57.5
Zm00001eb183490 Zea mays HOM05D005575 ORTHO05D007355 1.9e-128 463.4 400 56.8
Solyc09g083000.3 Solanum lycopersicum HOM05D005575 ORTHO05D007355 1.6e-127 460.3 399 57.6
AUR62008592 Chenopodium quinoa HOM05D005575 ORTHO05D007355 1.8e-126 456.8 403 57.6
Sopen09g031870 Solanum pennellii HOM05D005575 ORTHO05D007355 3.1e-126 456.1 399 57.4
vmacro15397 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 6.9e-126 454.9 377 61.0
unitig_62.g23259 Utricularia gibba HOM05D005575 ORTHO05D007355 5.4e-123 445.3 399 56.4
SGA_v2.0_scaffold101G29757 Striga asiatica HOM05D005575 ORTHO05D007355 1.2e-122 444.1 399 56.4
Pp3c15_1060 Physcomitrium patens HOM05D005575 ORTHO05D007355 2.7e-114 416.4 370 59.7
Lj3A720G71 Lonicera japonica HOM05D005575 ORTHO05D007355 1.3e-111 407.5 315 65.7
CBR_g10806 Chara braunii HOM05D005575 ORTHO05D007355 2.4e-110 403.3 521 43.0
FAN12G1274 Fragaria x ananassa HOM05D005575 ORTHO05D007355 1.8e-105 387.1 320 63.1
SHI00566 Sapria himalayana HOM05D005575 ORTHO05D007355 2.8e-79 300.1 287 54.7
Nn1g02522 Nelumbo nucifera HOM05D005575 ORTHO05D007355 1.5e-59 234.6 196 60.2
Actinidia05473 Actinidia chinensis HOM05D005575 ORTHO05D007355 2.7e-58 230.3 190 60.5
BcaC05g25996 Brassica carinata HOM05D005575 ORTHO05D007355 1.4e-46 191.4 218 50.0
BolC5t30651H Brassica oleracea HOM05D005575 ORTHO05D007355 2.7e-45 187.2 180 52.8
C05p19490 Brassica napus HOM05D005575 ORTHO05D007355 3.5e-45 186.8 180 52.8
TAR365G1190 Trochodendron aralioides HOM05D005575 ORTHO05D007355 2.0e-37 161.0 209 44.0
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 2.3e-36 157.5 145 53.8
AagrBONN_evm.TU.Sc2ySwM_344.3391 Anthoceros agrestis HOM05D005575 ORTHO05D007355 2.5e-35 154.1 381 32.0
C08p25570 Brassica napus HOM05D005575 ORTHO05D027690 8.9e-33 145.6 146 50.7
BolC8t50179H Brassica oleracea HOM05D005575 ORTHO05D027690 5.4e-30 136.3 121 53.7
SHI00565 Sapria himalayana HOM05D005575 ORTHO05D007355 8.1e-26 122.5 116 56.0
TAR365G1076 Trochodendron aralioides HOM05D005575 ORTHO05D007355 2.1e-18 97.8 57 80.7
BcaC07g39513 Brassica carinata HOM05D005575 ORTHO05D027690 5.2e-17 93.2 60 65.0
Psat7g122560 Pisum sativum HOM05D005575 ORTHO05D007355 3.8e-15 87.0 59 62.7
SalBow3G4542 Salvia bowleyana HOM05D005575 ORTHO05D007355 3.2e-14 84.0 56 71.4
Sabra10G0062800 Salix brachista HOM05D005575 ORTHO05D027690 2.5e-11 74.3 83 45.8


User provided reference genes

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