Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 3.2e-110 401.7 200 100.0
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 3.6e-53 212.2 201 53.7
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 4.4e-51 205.3 195 52.3
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 1.4e-49 200.3 203 50.7
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 1.4e-49 200.3 203 50.7
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 5.0e-47 191.8 202 47.5
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 6.8e-44 181.4 204 45.1
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 2.6e-43 179.5 199 43.2
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 2.6e-43 179.5 199 45.2
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 6.3e-42 174.9 199 44.2
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 5.4e-41 171.8 198 43.4
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 1.2e-40 170.6 199 41.7
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 5.9e-40 168.3 204 40.7
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 3.8e-39 165.6 199 42.7
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 5.0e-39 165.2 204 42.2
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 6.6e-39 164.9 203 41.9
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 1.1e-38 164.1 204 43.1
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 1.5e-38 163.7 195 43.1
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 2.5e-38 162.9 201 43.3
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 3.3e-38 162.5 204 42.2
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 4.3e-38 162.2 205 41.5
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 4.3e-38 162.2 171 46.8
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 5.6e-38 161.8 199 40.7
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 7.3e-38 161.4 205 41.5
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 1.2e-37 160.6 204 41.7
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 1.6e-37 160.2 193 40.9
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 4.7e-37 158.7 201 42.3
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 4.7e-37 158.7 200 39.5
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.4e-36 157.1 192 43.8
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 1.8e-36 156.8 202 41.1
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 1.8e-36 156.8 204 41.2
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 2.3e-36 156.4 201 41.3
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 5.2e-36 155.2 206 41.3
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 5.2e-36 155.2 203 40.9
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 6.8e-36 154.8 172 44.2
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 8.9e-36 154.5 207 41.1
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 8.9e-36 154.5 207 40.6
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 8.9e-36 154.5 204 39.2
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 1.2e-35 154.1 201 40.8
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 1.2e-35 154.1 206 41.3
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 1.2e-35 154.1 198 39.9
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 1.5e-35 153.7 204 40.7
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 2.0e-35 153.3 200 40.5
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 2.6e-35 152.9 205 36.6
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 4.4e-35 152.1 221 38.9
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 4.4e-35 152.1 207 40.6
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 4.4e-35 152.1 206 40.3
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 7.5e-35 151.4 205 36.6
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 7.5e-35 151.4 212 38.7
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 7.5e-35 151.4 202 39.6
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 7.5e-35 151.4 202 39.6
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 7.5e-35 151.4 227 38.3
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 9.8e-35 151.0 205 36.1
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 9.8e-35 151.0 205 36.1
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 9.8e-35 151.0 202 39.6
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 9.8e-35 151.0 198 38.9
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 1.3e-34 150.6 228 35.5
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 1.7e-34 150.2 206 40.3
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 1.7e-34 150.2 200 39.5
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 2.2e-34 149.8 228 35.1
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.2e-34 149.8 198 38.9
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 2.2e-34 149.8 206 40.3
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 2.9e-34 149.4 198 38.4
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 4.9e-34 148.7 199 38.2
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 6.4e-34 148.3 224 35.7
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 6.4e-34 148.3 233 35.2
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 6.4e-34 148.3 233 35.2
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 6.4e-34 148.3 227 36.1
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 8.3e-34 147.9 204 35.8
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 1.8e-33 146.7 202 39.1
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 1.8e-33 146.7 232 37.5
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 2.4e-33 146.4 222 37.4
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.4e-33 146.4 203 39.9
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 2.4e-33 146.4 203 39.9
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 3.2e-33 146.0 208 38.0
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 3.2e-33 146.0 196 42.3
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 4.1e-33 145.6 192 38.5
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 5.4e-33 145.2 208 35.6
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 5.4e-33 145.2 206 38.8
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 9.2e-33 144.4 194 38.1
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.0e-32 143.3 194 38.1
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.7e-32 142.9 194 37.6
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 2.7e-32 142.9 206 37.9
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 2.7e-32 142.9 199 36.7
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 4.6e-32 142.1 208 38.5
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 6.0e-32 141.7 204 35.8
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 1.0e-31 141.0 202 38.1
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 1.0e-31 141.0 196 36.2
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 1.3e-31 140.6 197 36.0
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.3e-31 140.6 227 36.1
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 2.3e-31 139.8 204 34.8
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 2.3e-31 139.8 198 38.9
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 3.0e-31 139.4 204 36.3
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 3.0e-31 139.4 198 37.9
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 3.9e-31 139.0 206 36.9
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 3.9e-31 139.0 198 37.9
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 5.0e-31 138.7 198 37.9
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 5.0e-31 138.7 196 37.2
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 6.6e-31 138.3 199 35.2
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 6.6e-31 138.3 199 35.2
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 8.6e-31 137.9 202 37.1
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 8.6e-31 137.9 193 36.8
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 8.6e-31 137.9 198 38.9
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 1.1e-30 137.5 187 41.2
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 1.1e-30 137.5 197 38.6
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 1.1e-30 137.5 193 36.3
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 1.9e-30 136.7 204 33.8
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 3.3e-30 136.0 239 34.3
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 4.3e-30 135.6 201 34.3
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 7.3e-30 134.8 200 37.0
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 1.2e-29 134.0 192 38.5
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 2.1e-29 133.3 195 34.9
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 3.6e-29 132.5 195 36.9
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 6.2e-29 131.7 162 40.1
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 1.4e-28 130.6 269 31.2
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 6.8e-28 128.3 116 48.3
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 4.4e-27 125.6 197 34.5
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 5.8e-27 125.2 206 34.5
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 5.8e-27 125.2 142 43.0
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 9.8e-27 124.4 195 33.3
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 5.4e-25 118.6 245 30.6
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 4.6e-24 115.5 203 34.5
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 6.0e-24 115.2 127 43.3
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 6.0e-24 115.2 126 42.1
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 1.3e-23 114.0 154 39.6
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.7e-23 113.6 193 34.7
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 2.3e-23 113.2 131 40.5
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 5.0e-23 112.1 175 34.9
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 8.6e-23 111.3 202 33.2
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 2.1e-21 106.7 132 34.8
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 3.6e-21 105.9 204 33.8
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 6.2e-21 105.1 211 30.8
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 8.1e-21 104.8 154 34.4
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 3.1e-20 102.8 189 33.3
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 6.8e-20 101.7 190 35.3
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 7.5e-19 98.2 150 37.3
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 1.7e-18 97.1 96 44.8
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 4.9e-18 95.5 109 40.4
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 1.4e-17 94.0 141 36.9
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 1.9e-17 93.6 108 38.9
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 2.4e-17 93.2 109 37.6
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 1.2e-16 90.9 142 36.6
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 2.7e-16 89.7 125 39.2
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 3.6e-13 79.3 198 27.8
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 3.6e-13 79.3 82 46.3
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 2.2e-10 70.1 200 27.0
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 4.1e-09 65.9 117 34.2
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 7.1e-09 65.1 59 47.5
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 1.6e-08 63.9 195 25.1
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 3.5e-08 62.8 181 24.9
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.9e-07 59.3 55 47.3
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 8.7e-07 58.2 113 30.1
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 3.3e-06 56.2 88 39.8


User provided reference genes

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